prot_H-elongata_contig55450.12961.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig55450.12961.1
Unique Nameprot_H-elongata_contig55450.12961.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig55450.12961.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.880e-13
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    1 MKDGKLFVVDHELLAGMPATPINDVPRYLAVGIALFEVVDDDFLPIKPIGIQ 52
            MK GKLFVVDH L+  +  +P+  +PRYLA  +ALFE VDD+ LP+KP+GIQ
Sbjct:  196 MKAGKLFVVDHHLIKDVETSPLEGIPRYLAPSVALFEAVDDELLPLKPLGIQ 247          
BLAST of mRNA_H-elongata_contig55450.12961.1 vs. uniprot
Match: A0A6H5K920_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K920_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.570e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    1 MKDGKLFVVDHELLAGMPATPINDVPRYLAVGIALFEVVDDDFLPIKPIGIQ 52
            MK GKLFVVD  ++  +   P+ DVPRYLA  +ALFE VDD+ LP+KP+GIQ
Sbjct:  268 MKAGKLFVVDQHIVKEVQTAPLEDVPRYLAPCVALFEAVDDELLPLKPVGIQ 319          
BLAST of mRNA_H-elongata_contig55450.12961.1 vs. uniprot
Match: D8LBX4_ECTSI (Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.490e-10
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0
Query:    1 MKDGKLFVVDHELLAGMPATPINDVPRYLAVGIALFEVVDDDFLPIKPIGIQ 52
            M +GKLFVVDHELL G        V RYL   +ALFEV+DDD LPI+PIGIQ
Sbjct:  252 MDEGKLFVVDHELLKG--------VERYLTPSVALFEVIDDDLLPIRPIGIQ 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55450.12961.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KD72_9PHAE2.880e-1359.62Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
A0A6H5K920_9PHAE2.570e-1259.62Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
D8LBX4_ECTSI1.490e-1063.46Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.60coord: 1..53
e-value: 4.5E-8
score: 35.0
IPR013819Lipoxygenase, C-terminalPROSITEPS51393LIPOXYGENASE_3coord: 1..53
score: 12.314
IPR036226Lipoxigenase, C-terminal domain superfamilySUPERFAMILY48484Lipoxigenasecoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55450contigH-elongata_contig55450:1173..1720 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55450.12961.1mRNA_H-elongata_contig55450.12961.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig55450 1173..1741 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig55450.12961.1 ID=prot_H-elongata_contig55450.12961.1|Name=mRNA_H-elongata_contig55450.12961.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MKDGKLFVVDHELLAGMPATPINDVPRYLAVGIALFEVVDDDFLPIKPIG
IQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013819LipOase_C
IPR036226LipOase_C_sf