mRNA_H-elongata_contig5542.12957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5542.12957.1
Unique NamemRNA_H-elongata_contig5542.12957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A6H5JV52_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV52_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 3.530e-64
Identity = 146/275 (53.09%), Postives = 174/275 (63.27%), Query Frame = 1 
Query:  619 KTEAEVEGKARRKWQALVGMLGSEDNATSGFADAVALLRGGEDMALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPG---GVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGAKKMRPGQ-EDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESEWLEVGKGGAKAVINTPDSRQRISKSSL 1431
            K   +  G A R W++L+ +LG ED    GF  A   +  G  +  G LV+RG++NTGNSCFR+AVLQALLACEPFV++LF AAPGLRDSI A+EALPTW QLARFAAAFEPPK   +  L  G S          G+WSTA GR                 EPV+PDEAMS+AFG FR+ + GEQEDAQEFLAFFLDQLHEEIV AKK +P    DG  RG    +   G             E+  WLEVGKGGAKAV+N PD R+++S SS+
Sbjct:  204 KAAQDAAGLAERVWESLLQLLGGED----GFIAAGGAVGLGAGVPAGGLVHRGLINTGNSCFRNAVLQALLACEPFVQVLFRAAPGLRDSIPAKEALPTWAQLARFAAAFEPPKPGDAAPLGSGGSSSAK------GAWSTAGGRXXXXXXXXXXXXXXXAAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDAKKNKPKPASDGGDRGGSADS---GTXXXXXXXXXXXXEDDAWLEVGKGGAKAVVNAPDPRKKVSNSSV 465
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BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: D7FJX3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.550e-55
Identity = 133/259 (51.35%), Postives = 162/259 (62.55%), Query Frame = 1 
Query:  646 ARRKWQALVGMLGSEDNATSGFADAVALLRGGEDMALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGAKKM--RPGQEDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESEWLEVGKGGAKAVINTPDSRQRI 1416
            A R W++L+ +LG E+   +   +AV L   G  +  G LV+RG++NTGNSCFR+AVLQALLACEPFV++LF AAPGLRDS+ A+EALPTW QLARFAAAFEPPK  A+  LA                                     EPV+PDEAMS+AFG FR+ + GEQEDAQEFLAFFLDQLHEEIV AKK   +P  + G G  S             GEG    +E+  WLEVGKGGAKAV+N PD R+++
Sbjct:  246 AERVWESLLQLLGDENGLITA-GEAVGL---GAGVPAGGLVHRGLINTGNSCFRNAVLQALLACEPFVQVLFRAAPGLRDSVPAREALPTWAQLARFAAAFEPPKPGAAAPLAXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDAKKNNPKPASDGGSGGVSADXXXXXXXXXXXGEG----EEDDAWLEVGKGGAKAVVNAPDPRKKV 493
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BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: W7TN80_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN80_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.610e-18
Identity = 78/195 (40.00%), Postives = 105/195 (53.85%), Query Frame = 1 
Query:  769 YRGMVNTGNSCFRSAVLQALLACEPFVKILFM--------AAPGLRD-SILA---QEALPTWVQLARFAAAFEPPKTVASTS--------------LAGGSS-QKGLAGAGRGGSWS----------TAVGRKKLGGRHHRAPGG----VEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGA 1230
            +RG+VN GN+CF++ VLQALLA EP  ++L +        ++P  R  S+LA   Q  +PTW+ +A+ A A E P  VA+++              +AG  S +K L G G   S S           A G K  G    R+P      + P+ PD+ + +AF  FRS   GEQEDAQEFLAF LD+LHEE VGA
Sbjct:  133 HRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 327
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BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A4D9D9D9_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9D9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-17
Identity = 95/258 (36.82%), Postives = 127/258 (49.22%), Query Frame = 1 
Query:  769 YRGMVNTGNSCFRSAVLQALLACEPFVKILFM-----------AAPGLRDSILA---QEALPTWVQLARFAAAFEPPKTVASTS--------------LAGGSS-QKGLAGAGRGGSWST-----------AVGRKKLGGRHHRAPGG----VEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGAKKMRPGQEDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESEWLEVGKGGAKAVINTPDSRQ 1410
            +RG+VN GN+CF++ VLQALLA EP  ++L             A+P L  S+LA   Q  +PTW+ +A+ A A E P  VA+++              +AG  S +K L G G   S S+           A G K  G    R+P      + P+ PD+ + +AF  FRS   GEQEDAQEFLAF LD+LHEE VGA     G E+G G              E  EG+GG      W EVG+ G  A ++    +Q
Sbjct:  226 HRGLVNAGNTCFQNLVLQALLASEPLHRLLLALRPLVLASSSPASPSL--SLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSSFPPLPSHPSGVANGFKLHGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGAGA---GGEEGKGA------------REEEEGEGG------WQEVGEKGRVAKLSVSGVKQ 460
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BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A836CGA5_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-13
Identity = 67/211 (31.75%), Postives = 91/211 (43.13%), Query Frame = 1 
Query:  763 LVYRGMVNTGNSCFRSAVLQALLACEPFVK-ILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGAKKMRPGQEDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESEWLEVGKGGAKAVIN 1392
            L  RGMVNTGN+C+R AVLQ+LLAC P  + +L   A  L  +  A E +PTW  LA+F   F                            W   +G    G          + V P + + +  G FR    GEQEDA+EFLA+FL +LH+E+    K +    + H      + +                   EW EVG+GG  AV+N
Sbjct:  119 LACRGMVNTGNTCYRLAVLQSLLACAPLAEAVLARPARRLLAAPAAAEHVPTWTALAQFWREF----------------------------WG--IGAANAG----------KAVNPQDTLRQVLGSFRGAVAGEQEDAEEFLAYFLGKLHDEVERLVKKQAKDAEQHAVLQQAAVD------------------DEWQEVGRGGVAAVVN 271
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BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A833QWE1_9POAL (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QWE1_9POAL)

HSP 1 Score: 72.4 bits (176), Expect = 1.180e-9
Identity = 59/181 (32.60%), Postives = 83/181 (45.86%), Query Frame = 1 
Query:  763 LVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVE------PVVPDEAMSKAFGLFRSFNDG---------EQEDAQEFLAFFLDQLHEEIVGAKKMRPGQEDG 1260
            L+ RG+VNTGN+CF +A LQALL+C PFV+ L      LRD  L + A PT      F + F+ P+  ++                            KL G+     GG+E      PV+ D  +       RSFN            QEDAQEFL+F +DQ+H+E++      P  ++G
Sbjct:  195 LIPRGLVNTGNTCFLNASLQALLSCSPFVEFL----QDLRDRALPKVAYPTLGAFVDFVSNFDMPEDSST----------------------------KLNGK-----GGIECAKSLCPVMFDPVL-------RSFNPNLSTGVSAHSRQEDAQEFLSFLMDQMHDELLKLNSGSPNSKEG 331
[Close]
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A061H8E3_9BASI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H8E3_9BASI)

HSP 1 Score: 72.4 bits (176), Expect = 1.730e-9
Identity = 71/209 (33.97%), Postives = 87/209 (41.63%), Query Frame = 1 
Query:  649 RRKWQALVGMLGSEDNATSGFADAVAL-----LRGGEDMALGDLVY-RGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHR----APGGVEPVVPD---EAM--SKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGA 1230
            RRK     G  GS  +A SG A    +     L          L + RG+VNTGN CF +A+LQ L+ C PF  +  +   G         A P    +  F   F    T A  + AGG                         G H      APG  EP VP+   EAM  +K F   R    G QEDA+EFL FFLD LHEE++GA
Sbjct:  383 RRKSGVGAGEAGSRHHAASGPAKPAVMSLERMLADSHKSFKAPLTHPRGLVNTGNFCFANAILQMLVYCAPFYNLFTLI--GREVPADFGNATPLMEAVIHFLREFVLVDTAAQVNGAGGEHDDS--------------------GEHEAVSSFAPGASEPFVPEFVYEAMRLNKRFDQMRR---GHQEDAEEFLGFFLDTLHEELIGA 566
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BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: UPI000540042C (ubiquitin carboxyl-terminal hydrolase 24 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000540042C)

HSP 1 Score: 70.1 bits (170), Expect = 6.140e-9
Identity = 59/166 (35.54%), Postives = 83/166 (50.00%), Query Frame = 1 
Query:  739 GEDMALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQK----GLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIV 1224
            G    +GDL+ RG++N GNSCF +A LQALL+C PF+K+L      LR   + +   PT +    F + F+ P          GSS K     L   GR   +S A+             G V+   PD A S  +G  R      QEDAQEFL+F +D++H+E++
Sbjct:  172 GSIATMGDLLPRGLINAGNSCFINATLQALLSCSPFLKLL----QDLRTRDIPKVDYPTLIAFVDFVSEFDMPH---------GSSSKTKDSSLVETGR--PFSPAM-----------FEGVVKNFTPDVA-SDFYGWTR------QEDAQEFLSFVMDRMHDELL 304
[Close]
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A0X8HVK3_9SACH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A0X8HVK3_9SACH)

HSP 1 Score: 70.5 bits (171), Expect = 6.340e-9
Identity = 62/164 (37.80%), Postives = 84/164 (51.22%), Query Frame = 1 
Query:  751 ALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQ--LARFAA----AFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIV 1224
            A+  +V RG++N GN CF S+VLQ LL C+PF+K+L +    +R S  A E LP  ++  +  F      AFE  K+    SL  G+  K L  A +       V   +           V+P    +++SK   LFR    G QEDA+EFL  FLDQLHEE V
Sbjct:  364 AINSIVPRGILNKGNICFMSSVLQVLLFCKPFIKMLNVV--HMRTSHKAGENLPPLLEACIEFFKGFDKNAFEKEKSEKQASL--GNGNKSLKNAAQ-------VSLSES----------VDPEPFYKSISK-LALFRDLQWGHQEDAEEFLTHFLDQLHEEFV 505
[Close]
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A5A7QE53_STRAF (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QE53_STRAF)

HSP 1 Score: 69.7 bits (169), Expect = 8.020e-9
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:  760 DLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAF-GLFRSFNDG-EQEDAQEFLAFFLDQLHEEIV 1224
            D++ RG++N+GN CF +A LQALLAC PFV++L     GLR+  +A+   PT   L  F A F+           GGS  K                +K +       P    P++ +E + K    +F S +    QEDAQEFL+F +DQ+H+E++
Sbjct:  176 DMLPRGLINSGNLCFLNATLQALLACSPFVQLL----QGLRNRNIAKVHHPTLAALVDFIAEFD---------AVGGSITK----------------KKDVSELEIGRP--FSPIMFEEVLRKFTPDIFGSVSGRPRQEDAQEFLSFIMDQMHDELL 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV52_9PHAE3.530e-6453.09USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJX3_ECTSI1.550e-5551.35USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
W7TN80_9STRA1.610e-1840.00USP domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A4D9D9D9_9STRA1.380e-1736.82USP domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A836CGA5_9STRA1.770e-1331.75USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A833QWE1_9POAL1.180e-932.60Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Care... [more]
A0A061H8E3_9BASI1.730e-933.97Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Pseu... [more]
UPI000540042C6.140e-935.54ubiquitin carboxyl-terminal hydrolase 24 n=1 Tax=B... [more]
A0A0X8HVK3_9SACH6.340e-937.80Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Erem... [more]
A0A5A7QE53_STRAF8.020e-934.39Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Stri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5542contigH-elongata_contig5542:53..4014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue3.5e-53
Seed eggNOG ortholog2880.D7FJX3
Preferred nameUBP24
KEGG koko:K11841
KEGG Pathwayko04139,map04139
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016579,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0070646,GO:0070647,GO:0071704,GO:1901564
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1871@1,KOG1871@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-10_000790.1
Exons5
Model size1818
Cds size1818
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5542.12957.1prot_H-elongata_contig5542.12957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5542 53..4014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.2578878-CDS-H-elongata_contig5542:52..4421622930903.2578878-CDS-H-elongata_contig5542:52..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 53..442 -
1691679618.2871714-CDS-H-elongata_contig5542:52..4421691679618.2871714-CDS-H-elongata_contig5542:52..442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 53..442 -
1622930903.2837358-CDS-H-elongata_contig5542:1163..13851622930903.2837358-CDS-H-elongata_contig5542:1163..1385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 1164..1385 -
1691679618.297933-CDS-H-elongata_contig5542:1163..13851691679618.297933-CDS-H-elongata_contig5542:1163..1385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 1164..1385 -
1622930903.326642-CDS-H-elongata_contig5542:1787..18771622930903.326642-CDS-H-elongata_contig5542:1787..1877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 1788..1877 -
1691679618.3067307-CDS-H-elongata_contig5542:1787..18771691679618.3067307-CDS-H-elongata_contig5542:1787..1877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 1788..1877 -
1622930903.3824282-CDS-H-elongata_contig5542:2495..27601622930903.3824282-CDS-H-elongata_contig5542:2495..2760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 2496..2760 -
1691679618.315726-CDS-H-elongata_contig5542:2495..27601691679618.315726-CDS-H-elongata_contig5542:2495..2760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 2496..2760 -
1622930903.3978934-CDS-H-elongata_contig5542:3163..40141622930903.3978934-CDS-H-elongata_contig5542:3163..4014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 3164..4014 -
1691679618.3255584-CDS-H-elongata_contig5542:3163..40141691679618.3255584-CDS-H-elongata_contig5542:3163..4014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5542 3164..4014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5542.12957.1

>prot_H-elongata_contig5542.12957.1 ID=prot_H-elongata_contig5542.12957.1|Name=mRNA_H-elongata_contig5542.12957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=606bp
ISWARIAAGPPKPSPRPAAASVPAAGLPRPAQATSRLPRAISEGVTAERG
QEPAVAPNGNWSTRADKREKAGHVTGSSREISLDVVGAVDVANAGASEVS
PGKGPRGENKVKAAAGGDLAAGDPPDTAVSPMSAMSATAVKVTGETKATN
PSPRSADATSAAKADDLQSQSQVGGDSGATGGKAQLANGGWEDEKACSEG
DDLAAEKTEAEVEGKARRKWQALVGMLGSEDNATSGFADAVALLRGGEDM
ALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQ
EALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVG
RKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFL
DQLHEEIVGAKKMRPGQEDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESE
WLEVGKGGAKAVINTPDSRQRISKSSLDLHPSTSPPHHGSNHGSSEGPAS
SGTAWGVAAASSNGVVTVSNGGPGRGVGGAWGTTSSNGRGQRAGEVKGEN
SAWGGGAAGTGAAAWGSSGVAAANGPKATVLDEALAALFGGEAVAGVKGR
QNVEVR
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mRNA from alignment at H-elongata_contig5542:53..4014-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5542.12957.1 ID=mRNA_H-elongata_contig5542.12957.1|Name=mRNA_H-elongata_contig5542.12957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3962bp|location=Sequence derived from alignment at H-elongata_contig5542:53..4014- (Himanthalia elongata Himel1 dioecious)
ATCTCGTGGGCAAGAATAGCCGCAGGACCCCCGAAGCCATCTCCGCGCCC
TGCCGCCGCTTCTGTCCCCGCTGCCGGGTTGCCGCGACCTGCGCAAGCAA
CATCGCGCTTGCCACGAGCAATTTCAGAGGGGGTAACGGCTGAAAGGGGG
CAAGAACCAGCGGTAGCGCCAAATGGCAACTGGTCTACCCGTGCCGATAA
GCGTGAGAAAGCAGGCCATGTCACAGGCAGCAGCAGGGAGATCAGCCTAG
ATGTCGTTGGTGCGGTAGATGTTGCAAACGCCGGAGCCTCGGAGGTGTCT
CCGGGCAAGGGGCCTCGTGGGGAGAATAAGGTAAAGGCGGCAGCGGGTGG
GGACTTGGCAGCGGGCGATCCCCCGGATACGGCAGTATCACCAATGTCGG
CGATGTCGGCGACTGCAGTAAAAGTAACAGGAGAAACGAAAGCGACGAAT
CCGAGCCCACGGTCTGCCGATGCTACGTCTGCGGCAAAGGCAGATGACCT
GCAGTCGCAATCACAGGTTGGCGGAGACTCTGGGGCAACCGGGGGAAAGG
CCCAACTCGCCAACGGCGGTTGGGAAGACGAGAAGGCCTGTTCCGAGGGG
GACGACCTCGCCGCGGAAAAGACGGAGGCGGAGGTTGAAGGAAAAGCGCG
GCGGAAGTGGCAGGCATTGGTAGGGATGCTAGGGAGTGAGGACAACGCGA
CTTCGGGGTTTGCGGACGCGGTGGCATTGCTGAGAGGAGGAGAGGACATG
GCGCTCGGAGACCTGGTGTACCGAGGAATGGTTAACACTGGAAACAGCTG
CTTCCGGAGCGCGGTATTGCAGGCCCTGCTGGCGTGCGAGCCGTTTGTGA
AGTGAGGGAATTTATGTTTCATGTTTAGTTTTGTTTTTTTGACTGCTCTT
CGCGTTTGCATGTTCCGCTCCTTTGTTTTTCATCCCTATCCATGATCTTT
ATGAGTGTGTTAGGCGGTGACCATGTCCGTGTAACTACGATGTGGCGCGA
TGATCTATTTCGATTTTTTGTCCCCGATATCTAGCGTGGTTTTCACGAAG
GCGGGGCAGGGGCGGCGAGGGAAGTAACAAGCTCTGTTTTTGCGCACCGT
TTTGCGTCGTTTCCTGTGCTTGGCAAGTGTTTTCAATACTTCGAAGCTCA
CTTCGGTGTATATTCCCTCCCACTCCCTCTCCAAACACGCCTCTTTCCTC
TATAAAACACTCGTGTCCCTGCCCCCATGGTCCACGGCGCCGACCGACTC
CCAGGATTCTGTTTATGGCCGCCCCGGGGCTGCGAGATTCAATCCTCGCT
CAGGAGGCGTTACCGACGTGGGTACAACTAGCGCGGTTCGCGGCAGCCTT
CGAACCGCCTAAGACTGTAGCCTCGACATCGTTGGCAGGCGGGTCGAGCC
AAAAAGGATTGGCTGGAGCTGGGAGAGGAGGGTCATGGTCTACCGCTGTG
GGTAGGAAGAAGTTGGGAGGGCGGCATCACCGGGCACCCGGAGGCGTAGA
GCCGGTCGTGCCCGACGAGGTAAGAAATGAGCAGTGACGTCACCTCATGG
CTCATTGTGATGAGGATAGTAGTGACGTCGTGCCATTGCCGCAAAACCTG
AGGTTTCCCCAAGGCACATTTTGTTTGGTAAGGGGAGAGGGAGAAGAAGG
TAGACAAATTATGTGTTTTACGGAGCGGTCCTTGCGTGTACCCAGCGGTT
CCACGTGTTTCCGTGGCGAGGTACGAACGAGCGACACAGTCCAGAAAAAT
CATTAATCGCAACAAGGAGCGCGTGTTGTTTGATACTCCCTAGTGCTGCC
CTCTGGTTGCCGTGCCAGAGTGATCGATAATACGAACGACAGCAATTAGT
ACCGCGATGGCGACATGCCCTGACGTAACTCTTGTTTTGTGTTTTGTGTC
TTTTGTCTTTTGTCTTTTGTCTTTTCCTTAAAAAATACACGAACTCATTC
AAACCCTCCGTGCGTGTGAGTGTACTCTTGTGTTTGTATACATGCGTAAA
TATTTATTAAATTATACATAACCGCGAAGTCAATCCGGCCCTGTAATCTA
CTCATATACATATACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC
AACTCTTGGGAATCATCTTGGGATGCGTGCCGGGCAGGCGATGTCGAAGG
CGTTCGGATTATTCCGCAGCTTCAACGATGGGGAGCAGGAGGACGCGCAG
GAGTTTCTGGCGTTTTTTCTCGACCAGGTACCGAACACGTGTATGAGTGG
TGGGGGCGGGGGTGTTCGATGTCCGGTGCTTTCTCGCGGTAATCTCTCTG
CTAATCTACCAAGATTTGTTCGTTTACTCCTGCGATGACGCCATATGCCG
CTGAAGAAGGGTGGAGCGGTTCGGCACGCCATGGGACGATAAGAGCGCGT
AAGTCAACGTATTCGCCGCCGAAAGTCAGTCTTCGATGCACTCGCCTGTC
TTGATCCCGATGCTGACGTCATCTGATTCGTATGCCCATTCGTATGCCGA
TGCTGATGCTGATGCCCATGCTGACGTCCTGCGGTTTTCCTCTTTTGACA
TCTCTCGACATCTCTCCCGCCGTGCCCCCCTCCCGCCGTGAACCCCTCGG
AAATGAAACCGCACGTCCCGGCGATGCAGTTACACGAAGAAATTGTTGGG
GCTAAGAAAATGCGGCCGGGTCAAGAGGACGGGCACGGCCGGGGGTCGGG
GTTTTCCACCGAGGGAAATGGCGACGAAGCCGAAGGAGGGGAAGGGGACG
GGGGGCGTCAAGAAGAGAGCGAGTGGTTGGAGGTTGGCAAGGGCGGGGCG
AAGGCCGTGATAAACACACCTGATTCTCGTCAAAGGATTTCCAAGTCGTC
CGTGGTGCGTTTCTTTTTTCGGCACCGGGTCGGAGTGGAACGTCGCCGTA
ACTTTTTTTTTTAAAGTCCGCCAATGCTCGAAATATATTCGTTTATAGAT
GTAGACCGGAAAAAAGGCGTTCTTTCCCCTGTAAAATAATATCTCGAACG
TTCTGTAGGGCGTTCGTGGTAGGGGTATCTCCTGTTATATCCCCTCCCGG
ACCAATTTTGAGAGCTCTCTATTCCTGACGCCGCCTTTTTTCTCCCCTTG
GGCTGCTCTTATCCAGGTTACCGGAATGTTCTACGGAATGTTCCGCTCGG
AGGTTAAGAAAATGGGCGCCAAGTCGTCGGTGACGCTGGAGCCCTTCCAC
TGTCTCCAGGTACTTAGCGAGCTTCTTCTTTGCCGCGTGGTGCCTTCACT
CTAGCGAACTCCCGTGTAGGCGTGTCTCCTAAAACATTGGCCTCGTGTGA
AAAACCCGCTCGAGTCGAGACGGTCTTTCATAGTTATTTAGGAGGCATTT
AATTGCGCCACGACATATACTTACCTGATCTGTCTGAATCATGACATGTG
CAGGTGCAGGAGGCACACCCGCTTTTTCTCTTTCCTCGAGGTGCTCGTAT
TAACATTAAGGCTCCGACGAACTGAATATGGATACGGGAGTGTGCCGAGG
CAATGTATTCAATCACTCATGACCACCCGATTTCGCCGTCGCTACTACCG
CATTTCCTTCCCGTTCTACCAGCTTGACCTGCACCCGTCAACATCTCCAC
CCCATCACGGCTCCAACCACGGTTCTTCAGAAGGCCCAGCTTCTTCAGGC
ACCGCTTGGGGAGTTGCAGCAGCATCATCAAACGGTGTCGTAACAGTGTC
GAACGGTGGGCCAGGGAGAGGGGTTGGTGGTGCATGGGGAACTACGAGCA
GTAACGGCAGAGGCCAGAGGGCTGGTGAGGTTAAGGGAGAGAACAGTGCA
TGGGGAGGAGGGGCAGCAGGGACAGGAGCGGCGGCGTGGGGGTCTTCCGG
GGTGGCCGCGGCGAATGGCCCGAAAGCAACGGTTTTGGACGAAGCTCTGG
CGGCGTTGTTCGGGGGAGAGGCTGTCGCCGGAGTGAAAGGGAGGCAGAAC
GTGGAGGTGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig5542:53..4014-

>mRNA_H-elongata_contig5542.12957.1 ID=mRNA_H-elongata_contig5542.12957.1|Name=mRNA_H-elongata_contig5542.12957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3636bp|location=Sequence derived from alignment at H-elongata_contig5542:53..4014- (Himanthalia elongata Himel1 dioecious)
ATCTCGTGGGCAAGAATAGCCGCAGGACCCCCGAAGCCATCTCCGCGCCC
TGCCGCCGCTTCTGTCCCCGCTGCCGGGTTGCCGCGACCTGCGCAAGCAA
CATCGCGCTTGCCACGAGCAATTTCAGAGGGGGTAACGGCTGAAAGGGGG
CAAGAACCAGCGGTAGCGCCAAATGGCAACTGGTCTACCCGTGCCGATAA
GCGTGAGAAAGCAGGCCATGTCACAGGCAGCAGCAGGGAGATCAGCCTAG
ATGTCGTTGGTGCGGTAGATGTTGCAAACGCCGGAGCCTCGGAGGTGTCT
CCGGGCAAGGGGCCTCGTGGGGAGAATAAGGTAAAGGCGGCAGCGGGTGG
GGACTTGGCAGCGGGCGATCCCCCGGATACGGCAGTATCACCAATGTCGG
CGATGTCGGCGACTGCAGTAAAAGTAACAGGAGAAACGAAAGCGACGAAT
CCGAGCCCACGGTCTGCCGATGCTACGTCTGCGGCAAAGGCAGATGACCT
GCAGTCGCAATCACAGGTTGGCGGAGACTCTGGGGCAACCGGGGGAAAGG
CCCAACTCGCCAACGGCGGTTGGGAAGACGAGAAGGCCTGTTCCGAGGGG
GACGACCTCGCCGCGGAAAAGACGGAGGCGGAGGTTGAAGGAAAAGCGCG
GCGGAAGTGGCAGGCATTGGTAGGGATGCTAGGGAGTGAGGACAACGCGA
CTTCGGGGTTTGCGGACGCGGTGGCATTGCTGAGAGGAGGAGAGGACATG
GCGCTCGGAGACCTGGTGTACCGAGGAATGGTTAACACTGGAAACAGCTG
CTTCCGGAGCGCGGTATTGCAGGCCCTGCTGGCGTGCGAGCCGTTTGTGA
AATCTCGTGGGCAAGAATAGCCGCAGGACCCCCGAAGCCATCTCCGCGCC
CTGCCGCCGCTTCTGTCCCCGCTGCCGGGTTGCCGCGACCTGCGCAAGCA
ACATCGCGCTTGCCACGAGCAATTTCAGAGGGGGTAACGGCTGAAAGGGG
GCAAGAACCAGCGGTAGCGCCAAATGGCAACTGGTCTACCCGTGCCGATA
AGCGTGAGAAAGCAGGCCATGTCACAGGCAGCAGCAGGGAGATCAGCCTA
GATGTCGTTGGTGCGGTAGATGTTGCAAACGCCGGAGCCTCGGAGGTGTC
TCCGGGCAAGGGGCCTCGTGGGGAGAATAAGGTAAAGGCGGCAGCGGGTG
GGGACTTGGCAGCGGGCGATCCCCCGGATACGGCAGTATCACCAATGTCG
GCGATGTCGGCGACTGCAGTAAAAGTAACAGGAGAAACGAAAGCGACGAA
TCCGAGCCCACGGTCTGCCGATGCTACGTCTGCGGCAAAGGCAGATGACC
TGCAGTCGCAATCACAGGTTGGCGGAGACTCTGGGGCAACCGGGGGAAAG
GCCCAACTCGCCAACGGCGGTTGGGAAGACGAGAAGGCCTGTTCCGAGGG
GGACGACCTCGCCGCGGAAAAGACGGAGGCGGAGGTTGAAGGAAAAGCGC
GGCGGAAGTGGCAGGCATTGGTAGGGATGCTAGGGAGTGAGGACAACGCG
ACTTCGGGGTTTGCGGACGCGGTGGCATTGCTGAGAGGAGGAGAGGACAT
GGCGCTCGGAGACCTGGTGTACCGAGGAATGGTTAACACTGGAAACAGCT
GCTTCCGGAGCGCGGTATTGCAGGCCCTGCTGGCGTGCGAGCCGTTTGTG
AAGATTCTGTTTATGGCCGCCCCGGGGCTGCGAGATTCAATCCTCGCTCA
GGAGGCGTTACCGACGTGGGTACAACTAGCGCGGTTCGCGGCAGCCTTCG
AACCGCCTAAGACTGTAGCCTCGACATCGTTGGCAGGCGGGTCGAGCCAA
AAAGGATTGGCTGGAGCTGGGAGAGGAGGGTCATGGTCTACCGCTGTGGG
TAGGAAGAAGTTGGGAGGGCGGCATCACCGGGCACCCGGAGGCGTAGAGC
CGGTCGTGCCCGACGAGGATTCTGTTTATGGCCGCCCCGGGGCTGCGAGA
TTCAATCCTCGCTCAGGAGGCGTTACCGACGTGGGTACAACTAGCGCGGT
TCGCGGCAGCCTTCGAACCGCCTAAGACTGTAGCCTCGACATCGTTGGCA
GGCGGGTCGAGCCAAAAAGGATTGGCTGGAGCTGGGAGAGGAGGGTCATG
GTCTACCGCTGTGGGTAGGAAGAAGTTGGGAGGGCGGCATCACCGGGCAC
CCGGAGGCGTAGAGCCGGTCGTGCCCGACGAGGCGATGTCGAAGGCGTTC
GGATTATTCCGCAGCTTCAACGATGGGGAGCAGGAGGACGCGCAGGAGTT
TCTGGCGTTTTTTCTCGACCAGGCGATGTCGAAGGCGTTCGGATTATTCC
GCAGCTTCAACGATGGGGAGCAGGAGGACGCGCAGGAGTTTCTGGCGTTT
TTTCTCGACCAGTTACACGAAGAAATTGTTGGGGCTAAGAAAATGCGGCC
GGGTCAAGAGGACGGGCACGGCCGGGGGTCGGGGTTTTCCACCGAGGGAA
ATGGCGACGAAGCCGAAGGAGGGGAAGGGGACGGGGGGCGTCAAGAAGAG
AGCGAGTGGTTGGAGGTTGGCAAGGGCGGGGCGAAGGCCGTGATAAACAC
ACCTGATTCTCGTCAAAGGATTTCCAAGTCGTCCTTACACGAAGAAATTG
TTGGGGCTAAGAAAATGCGGCCGGGTCAAGAGGACGGGCACGGCCGGGGG
TCGGGGTTTTCCACCGAGGGAAATGGCGACGAAGCCGAAGGAGGGGAAGG
GGACGGGGGGCGTCAAGAAGAGAGCGAGTGGTTGGAGGTTGGCAAGGGCG
GGGCGAAGGCCGTGATAAACACACCTGATTCTCGTCAAAGGATTTCCAAG
TCGTCCCTTGACCTGCACCCGTCAACATCTCCACCCCATCACGGCTCCAA
CCACGGTTCTTCAGAAGGCCCAGCTTCTTCAGGCACCGCTTGGGGAGTTG
CAGCAGCATCATCAAACGGTGTCGTAACAGTGTCGAACGGTGGGCCAGGG
AGAGGGGTTGGTGGTGCATGGGGAACTACGAGCAGTAACGGCAGAGGCCA
GAGGGCTGGTGAGGTTAAGGGAGAGAACAGTGCATGGGGAGGAGGGGCAG
CAGGGACAGGAGCGGCGGCGTGGGGGTCTTCCGGGGTGGCCGCGGCGAAT
GGCCCGAAAGCAACGGTTTTGGACGAAGCTCTGGCGGCGTTGTTCGGGGG
AGAGGCTGTCGCCGGAGTGAAAGGGAGGCAGAACGTGGAGGTGAGACTTG
ACCTGCACCCGTCAACATCTCCACCCCATCACGGCTCCAACCACGGTTCT
TCAGAAGGCCCAGCTTCTTCAGGCACCGCTTGGGGAGTTGCAGCAGCATC
ATCAAACGGTGTCGTAACAGTGTCGAACGGTGGGCCAGGGAGAGGGGTTG
GTGGTGCATGGGGAACTACGAGCAGTAACGGCAGAGGCCAGAGGGCTGGT
GAGGTTAAGGGAGAGAACAGTGCATGGGGAGGAGGGGCAGCAGGGACAGG
AGCGGCGGCGTGGGGGTCTTCCGGGGTGGCCGCGGCGAATGGCCCGAAAG
CAACGGTTTTGGACGAAGCTCTGGCGGCGTTGTTCGGGGGAGAGGCTGTC
GCCGGAGTGAAAGGGAGGCAGAACGTGGAGGTGAGA
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