prot_H-elongata_contig5542.12957.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5542.12957.1
Unique Nameprot_H-elongata_contig5542.12957.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length606
Homology
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A6H5JV52_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV52_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 3.530e-64
Identity = 146/275 (53.09%), Postives = 174/275 (63.27%), Query Frame = 0
Query:  207 KTEAEVEGKARRKWQALVGMLGSEDNATSGFADAVALLRGGEDMALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPG---GVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGAKKMRPGQ-EDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESEWLEVGKGGAKAVINTPDSRQRISKSSL 477
            K   +  G A R W++L+ +LG ED    GF  A   +  G  +  G LV+RG++NTGNSCFR+AVLQALLACEPFV++LF AAPGLRDSI A+EALPTW QLARFAAAFEPPK   +  L  G S          G+WSTA GR                 EPV+PDEAMS+AFG FR+ + GEQEDAQEFLAFFLDQLHEEIV AKK +P    DG  RG    +   G             E+  WLEVGKGGAKAV+N PD R+++S SS+
Sbjct:  204 KAAQDAAGLAERVWESLLQLLGGED----GFIAAGGAVGLGAGVPAGGLVHRGLINTGNSCFRNAVLQALLACEPFVQVLFRAAPGLRDSIPAKEALPTWAQLARFAAAFEPPKPGDAAPLGSGGSSSAK------GAWSTAGGRXXXXXXXXXXXXXXXAAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDAKKNKPKPASDGGDRGGSADS---GTXXXXXXXXXXXXEDDAWLEVGKGGAKAVVNAPDPRKKVSNSSV 465          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: D7FJX3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.550e-55
Identity = 133/259 (51.35%), Postives = 162/259 (62.55%), Query Frame = 0
Query:  216 ARRKWQALVGMLGSEDNATSGFADAVALLRGGEDMALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGAKKM--RPGQEDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESEWLEVGKGGAKAVINTPDSRQRI 472
            A R W++L+ +LG E+   +   +AV L   G  +  G LV+RG++NTGNSCFR+AVLQALLACEPFV++LF AAPGLRDS+ A+EALPTW QLARFAAAFEPPK  A+  LA                                     EPV+PDEAMS+AFG FR+ + GEQEDAQEFLAFFLDQLHEEIV AKK   +P  + G G  S             GEG    +E+  WLEVGKGGAKAV+N PD R+++
Sbjct:  246 AERVWESLLQLLGDENGLITA-GEAVGL---GAGVPAGGLVHRGLINTGNSCFRNAVLQALLACEPFVQVLFRAAPGLRDSVPAREALPTWAQLARFAAAFEPPKPGAAAPLAXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXAEPVLPDEAMSRAFGAFRAASLGEQEDAQEFLAFFLDQLHEEIVDAKKNNPKPASDGGSGGVSADXXXXXXXXXXXGEG----EEDDAWLEVGKGGAKAVVNAPDPRKKV 493          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: W7TN80_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN80_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.610e-18
Identity = 78/195 (40.00%), Postives = 105/195 (53.85%), Query Frame = 0
Query:  257 YRGMVNTGNSCFRSAVLQALLACEPFVKILFM--------AAPGLRD-SILA---QEALPTWVQLARFAAAFEPPKTVASTS--------------LAGGSS-QKGLAGAGRGGSWS----------TAVGRKKLGGRHHRAPGG----VEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGA 410
            +RG+VN GN+CF++ VLQALLA EP  ++L +        ++P  R  S+LA   Q  +PTW+ +A+ A A E P  VA+++              +AG  S +K L G G   S S           A G K  G    R+P      + P+ PD+ + +AF  FRS   GEQEDAQEFLAF LD+LHEE VGA
Sbjct:  133 HRGLVNAGNTCFQNLVLQALLASEPLHRLLLVLRPLVLASSSPASRSLSLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSFPPLPSHPSGVANGFKLRGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGA 327          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A4D9D9D9_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9D9_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-17
Identity = 95/258 (36.82%), Postives = 127/258 (49.22%), Query Frame = 0
Query:  257 YRGMVNTGNSCFRSAVLQALLACEPFVKILFM-----------AAPGLRDSILA---QEALPTWVQLARFAAAFEPPKTVASTS--------------LAGGSS-QKGLAGAGRGGSWST-----------AVGRKKLGGRHHRAPGG----VEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGAKKMRPGQEDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESEWLEVGKGGAKAVINTPDSRQ 470
            +RG+VN GN+CF++ VLQALLA EP  ++L             A+P L  S+LA   Q  +PTW+ +A+ A A E P  VA+++              +AG  S +K L G G   S S+           A G K  G    R+P      + P+ PD+ + +AF  FRS   GEQEDAQEFLAF LD+LHEE VGA     G E+G G              E  EG+GG      W EVG+ G  A ++    +Q
Sbjct:  226 HRGLVNAGNTCFQNLVLQALLASEPLHRLLLALRPLVLASSSPASPSL--SLLARRCQALVPTWMDMAKVAVALEDPSLVAASTASPALVMYKKKDSAVAGRKSGKKHLVGTGSSSSSSSFPPLPSHPSGVANGFKLHGPLEARSPSPRDFYLAPLRPDDYLEEAFRAFRSSEAGEQEDAQEFLAFLLDRLHEEAVGAGA---GGEEGKGA------------REEEEGEGG------WQEVGEKGRVAKLSVSGVKQ 460          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A836CGA5_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-13
Identity = 67/211 (31.75%), Postives = 91/211 (43.13%), Query Frame = 0
Query:  255 LVYRGMVNTGNSCFRSAVLQALLACEPFVK-ILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGAKKMRPGQEDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESEWLEVGKGGAKAVIN 464
            L  RGMVNTGN+C+R AVLQ+LLAC P  + +L   A  L  +  A E +PTW  LA+F   F                            W   +G    G          + V P + + +  G FR    GEQEDA+EFLA+FL +LH+E+    K +    + H      + +                   EW EVG+GG  AV+N
Sbjct:  119 LACRGMVNTGNTCYRLAVLQSLLACAPLAEAVLARPARRLLAAPAAAEHVPTWTALAQFWREF----------------------------WG--IGAANAG----------KAVNPQDTLRQVLGSFRGAVAGEQEDAEEFLAYFLGKLHDEVERLVKKQAKDAEQHAVLQQAAVD------------------DEWQEVGRGGVAAVVN 271          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A833QWE1_9POAL (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QWE1_9POAL)

HSP 1 Score: 72.4 bits (176), Expect = 1.180e-9
Identity = 59/181 (32.60%), Postives = 83/181 (45.86%), Query Frame = 0
Query:  255 LVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVE------PVVPDEAMSKAFGLFRSFNDG---------EQEDAQEFLAFFLDQLHEEIVGAKKMRPGQEDG 420
            L+ RG+VNTGN+CF +A LQALL+C PFV+ L      LRD  L + A PT      F + F+ P+  ++                            KL G+     GG+E      PV+ D  +       RSFN            QEDAQEFL+F +DQ+H+E++      P  ++G
Sbjct:  195 LIPRGLVNTGNTCFLNASLQALLSCSPFVEFL----QDLRDRALPKVAYPTLGAFVDFVSNFDMPEDSST----------------------------KLNGK-----GGIECAKSLCPVMFDPVL-------RSFNPNLSTGVSAHSRQEDAQEFLSFLMDQMHDELLKLNSGSPNSKEG 331          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A061H8E3_9BASI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A061H8E3_9BASI)

HSP 1 Score: 72.4 bits (176), Expect = 1.730e-9
Identity = 71/209 (33.97%), Postives = 87/209 (41.63%), Query Frame = 0
Query:  217 RRKWQALVGMLGSEDNATSGFADAVAL-----LRGGEDMALGDLVY-RGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHR----APGGVEPVVPD---EAM--SKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIVGA 410
            RRK     G  GS  +A SG A    +     L          L + RG+VNTGN CF +A+LQ L+ C PF  +  +   G         A P    +  F   F    T A  + AGG                         G H      APG  EP VP+   EAM  +K F   R    G QEDA+EFL FFLD LHEE++GA
Sbjct:  383 RRKSGVGAGEAGSRHHAASGPAKPAVMSLERMLADSHKSFKAPLTHPRGLVNTGNFCFANAILQMLVYCAPFYNLFTLI--GREVPADFGNATPLMEAVIHFLREFVLVDTAAQVNGAGGEHDDS--------------------GEHEAVSSFAPGASEPFVPEFVYEAMRLNKRFDQMRR---GHQEDAEEFLGFFLDTLHEELIGA 566          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: UPI000540042C (ubiquitin carboxyl-terminal hydrolase 24 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000540042C)

HSP 1 Score: 70.1 bits (170), Expect = 6.140e-9
Identity = 59/166 (35.54%), Postives = 83/166 (50.00%), Query Frame = 0
Query:  247 GEDMALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQK----GLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIV 408
            G    +GDL+ RG++N GNSCF +A LQALL+C PF+K+L      LR   + +   PT +    F + F+ P          GSS K     L   GR   +S A+             G V+   PD A S  +G  R      QEDAQEFL+F +D++H+E++
Sbjct:  172 GSIATMGDLLPRGLINAGNSCFINATLQALLSCSPFLKLL----QDLRTRDIPKVDYPTLIAFVDFVSEFDMPH---------GSSSKTKDSSLVETGR--PFSPAM-----------FEGVVKNFTPDVA-SDFYGWTR------QEDAQEFLSFVMDRMHDELL 304          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A0X8HVK3_9SACH (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A0X8HVK3_9SACH)

HSP 1 Score: 70.5 bits (171), Expect = 6.340e-9
Identity = 62/164 (37.80%), Postives = 84/164 (51.22%), Query Frame = 0
Query:  251 ALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQ--LARFAA----AFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFLDQLHEEIV 408
            A+  +V RG++N GN CF S+VLQ LL C+PF+K+L +    +R S  A E LP  ++  +  F      AFE  K+    SL  G+  K L  A +       V   +           V+P    +++SK   LFR    G QEDA+EFL  FLDQLHEE V
Sbjct:  364 AINSIVPRGILNKGNICFMSSVLQVLLFCKPFIKMLNVV--HMRTSHKAGENLPPLLEACIEFFKGFDKNAFEKEKSEKQASL--GNGNKSLKNAAQ-------VSLSES----------VDPEPFYKSISK-LALFRDLQWGHQEDAEEFLTHFLDQLHEEFV 505          
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Match: A0A5A7QE53_STRAF (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QE53_STRAF)

HSP 1 Score: 69.7 bits (169), Expect = 8.020e-9
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = 0
Query:  254 DLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQEALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVGRKKLGGRHHRAPGGVEPVVPDEAMSKAF-GLFRSFNDG-EQEDAQEFLAFFLDQLHEEIV 408
            D++ RG++N+GN CF +A LQALLAC PFV++L     GLR+  +A+   PT   L  F A F+           GGS  K                +K +       P    P++ +E + K    +F S +    QEDAQEFL+F +DQ+H+E++
Sbjct:  176 DMLPRGLINSGNLCFLNATLQALLACSPFVQLL----QGLRNRNIAKVHHPTLAALVDFIAEFD---------AVGGSITK----------------KKDVSELEIGRP--FSPIMFEEVLRKFTPDIFGSVSGRPRQEDAQEFLSFIMDQMHDELL 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5542.12957.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV52_9PHAE3.530e-6453.09USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJX3_ECTSI1.550e-5551.35USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
W7TN80_9STRA1.610e-1840.00USP domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A4D9D9D9_9STRA1.380e-1736.82USP domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A836CGA5_9STRA1.770e-1331.75USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A833QWE1_9POAL1.180e-932.60Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Care... [more]
A0A061H8E3_9BASI1.730e-933.97Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Pseu... [more]
UPI000540042C6.140e-935.54ubiquitin carboxyl-terminal hydrolase 24 n=1 Tax=B... [more]
A0A0X8HVK3_9SACH6.340e-937.80Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Erem... [more]
A0A5A7QE53_STRAF8.020e-934.39Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Stri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10coord: 255..486
e-value: 1.7E-17
score: 65.7
NoneNo IPR availablePANTHERPTHR21646FAMILY NOT NAMEDcoord: 167..415
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 259..409
e-value: 8.3E-12
score: 45.1
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 258..606
score: 10.963
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 257..414

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5542contigH-elongata_contig5542:53..4014 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5542.12957.1mRNA_H-elongata_contig5542.12957.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5542 53..4014 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5542.12957.1 ID=prot_H-elongata_contig5542.12957.1|Name=mRNA_H-elongata_contig5542.12957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=606bp
ISWARIAAGPPKPSPRPAAASVPAAGLPRPAQATSRLPRAISEGVTAERG
QEPAVAPNGNWSTRADKREKAGHVTGSSREISLDVVGAVDVANAGASEVS
PGKGPRGENKVKAAAGGDLAAGDPPDTAVSPMSAMSATAVKVTGETKATN
PSPRSADATSAAKADDLQSQSQVGGDSGATGGKAQLANGGWEDEKACSEG
DDLAAEKTEAEVEGKARRKWQALVGMLGSEDNATSGFADAVALLRGGEDM
ALGDLVYRGMVNTGNSCFRSAVLQALLACEPFVKILFMAAPGLRDSILAQ
EALPTWVQLARFAAAFEPPKTVASTSLAGGSSQKGLAGAGRGGSWSTAVG
RKKLGGRHHRAPGGVEPVVPDEAMSKAFGLFRSFNDGEQEDAQEFLAFFL
DQLHEEIVGAKKMRPGQEDGHGRGSGFSTEGNGDEAEGGEGDGGRQEESE
WLEVGKGGAKAVINTPDSRQRISKSSLDLHPSTSPPHHGSNHGSSEGPAS
SGTAWGVAAASSNGVVTVSNGGPGRGVGGAWGTTSSNGRGQRAGEVKGEN
SAWGGGAAGTGAAAWGSSGVAAANGPKATVLDEALAALFGGEAVAGVKGR
QNVEVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf