mRNA_H-elongata_contig55408.12956.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55408.12956.1
Unique NamemRNA_H-elongata_contig55408.12956.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.860e-25
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D +GPF P A GG+KY +K  D  ++W  V L+
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLM 671
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.960e-25
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D +GPF P A GG+KY +K  D  ++W  V L+
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLM 793
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.970e-25
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D +GPF P A GG+KY +K  D  ++W  V L+
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLM 671
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.750e-24
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
            V +A LWHRR+GH+N ++LD +++   NG      + DC  C +GKS Q  HPK+A   D+K PFQLV+ D +GPF P A GG+KY +K  D  ++W  + L+
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEA-TYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLM 624
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.400e-24
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRW 300
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D +GPF P A GG+KY +K  D  ++W
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 136
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.330e-23
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D  GPF     GG+KY +K  D  ++W  V L+
Sbjct:  475 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLM 576
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.220e-23
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   16 NAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
            +A+LWHRRLGH++ R+LD +++ D NG  + G +  CDVC +GKS Q  HPKKA   D+   FQ V  DLMGP +P A  G++YVSK     ++W  + L+
Sbjct:   36 SADLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKA-TYDVSRHFQ-VSTDLMGPISPPARRGFRYVSKFVHGNTKWKEIFLI 134
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.620e-22
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
            V +A+LWHRR+GH+N ++LD +++   NG  + G + DC VC +GKS Q  HPK+     ++ PFQ V  D +GPF P A GG+KY +K  D  ++W  + L+
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLR-PFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLM 384
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.070e-20
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
              NA   HRRLGHLN R++  +++ + N   F  ++  CD+C + KS QLAHPKK    +   P  LVY D+MG   P A GG+ YVS   D +SR   ++LL
Sbjct:  103 TVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSR-ETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLL 204
[Close]
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.240e-19
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:   10 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 318
            V +A+LWHRR+GH+N + LD +++   NG  + G +  C VC +GKS Q  HPK+A    ++ PFQ    D +GPFAP A GG KY +K  D  ++W  + L+
Sbjct:   43 VESADLWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLR-PFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLM 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE6.860e-2544.66Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE6.960e-2544.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE6.970e-2544.66Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JBV6_9PHAE1.750e-2444.66Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KNH5_9PHAE4.400e-2445.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYB5_9PHAE5.330e-2342.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE7.220e-2346.53CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KXM1_9PHAE4.620e-2242.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE9.070e-2042.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL37_9PHAE1.240e-1942.72Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55408contigH-elongata_contig55408:3513..3830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score69.7
Seed ortholog evalue9.3e-10
Seed eggNOG ortholog6334.EFV57947
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.2116876-CDS-H-elongata_contig55408:3512..38301622930903.2116876-CDS-H-elongata_contig55408:3512..3830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55408 3513..3830 -
1691679618.2735417-CDS-H-elongata_contig55408:3512..38301691679618.2735417-CDS-H-elongata_contig55408:3512..3830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55408 3513..3830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55408.12956.1prot_H-elongata_contig55408.12956.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55408 3513..3830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55408.12956.1

>prot_H-elongata_contig55408.12956.1 ID=prot_H-elongata_contig55408.12956.1|Name=mRNA_H-elongata_contig55408.12956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MNAVANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKS
HQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRW
NAVHLL
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mRNA from alignment at H-elongata_contig55408:3513..3830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55408.12956.1 ID=mRNA_H-elongata_contig55408.12956.1|Name=mRNA_H-elongata_contig55408.12956.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig55408:3513..3830- (Himanthalia elongata Himel1 dioecious)
ATGAATGCAGTCGCCAACGCCGAACTATGGCACCGACGGCTAGGTCACCT
GAATAAAAGGACCCTGGACTTTATGCAACGGCATGATGGTAACGGCAACA
CTTTCGACGGGACCTTAGCAGACTGCGACGTTTGTGTTGTGGGGAAAAGT
CATCAATTGGCTCACCCCAAGAAGGCTGAAAACGCTGATATTAAGACGCC
CTTCCAGCTAGTGTACGCAGACCTGATGGGACCATTTGCTCCGGCAGCTC
ACGGAGGTTACAAGTATGTGAGCAAGATCACAGACCATTTCTCCAGGTGG
AACGCCGTTCACCTGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig55408:3513..3830-

>mRNA_H-elongata_contig55408.12956.1 ID=mRNA_H-elongata_contig55408.12956.1|Name=mRNA_H-elongata_contig55408.12956.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig55408:3513..3830- (Himanthalia elongata Himel1 dioecious)
ATGAATGCAGTCGCCAACGCCGAACTATGGCACCGACGGCTAGGTCACCT
GAATAAAAGGACCCTGGACTTTATGCAACGGCATGATGGTAACGGCAACA
CTTTCGACGGGACCTTAGCAGACTGCGACGTTTGTGTTGTGGGGAAAAGT
CATCAATTGGCTCACCCCAAGAAGGCTGAAAACGCTGATATTAAGACGCC
CTTCCAGCTAGTGTACGCAGACCTGATGGGACCATTTGCTCCGGCAGCTC
ACGGAGGTTACAAGTATGTGAGCAAGATCACAGACCATTTCTCCAGGTGG
AACGCCGTTCACCTGCTCATGAATGCAGTCGCCAACGCCGAACTATGGCA
CCGACGGCTAGGTCACCTGAATAAAAGGACCCTGGACTTTATGCAACGGC
ATGATGGTAACGGCAACACTTTCGACGGGACCTTAGCAGACTGCGACGTT
TGTGTTGTGGGGAAAAGTCATCAATTGGCTCACCCCAAGAAGGCTGAAAA
CGCTGATATTAAGACGCCCTTCCAGCTAGTGTACGCAGACCTGATGGGAC
CATTTGCTCCGGCAGCTCACGGAGGTTACAAGTATGTGAGCAAGATCACA
GACCATTTCTCCAGGTGGAACGCCGTTCACCTGCTC
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