prot_H-elongata_contig55408.12956.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig55408.12956.1
Unique Name	prot_H-elongata_contig55408.12956.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	106

Homology

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BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.860e-25
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D +GPF P A GG+KY +K  D  ++W  V L+
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLM 671

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BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.960e-25
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D +GPF P A GG+KY +K  D  ++W  V L+
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLM 793

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BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 6.970e-25
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D +GPF P A GG+KY +K  D  ++W  V L+
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLM 671

[Close]

BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.750e-24
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
            V +A LWHRR+GH+N ++LD +++   NG      + DC  C +GKS Q  HPK+A   D+K PFQLV+ D +GPF P A GG+KY +K  D  ++W  + L+
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEA-TYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLM 624

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BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.400e-24
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRW 100
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D +GPF P A GG+KY +K  D  ++W
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 136

[Close]

BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.330e-23
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
            V  A+LWHRR+GH+N ++LD +++   +G  + G + DC  C +GKS Q  HPK A    + TPFQLV+ D  GPF     GG+KY +K  D  ++W  V L+
Sbjct:  475 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLM 576

[Close]

BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.220e-23
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0

Query:    6 NAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
            +A+LWHRRLGH++ R+LD +++ D NG  + G +  CDVC +GKS Q  HPKKA   D+   FQ V  DLMGP +P A  G++YVSK     ++W  + L+
Sbjct:   36 SADLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKA-TYDVSRHFQ-VSTDLMGPISPPARRGFRYVSKFVHGNTKWKEIFLI 134

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BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.620e-22
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
            V +A+LWHRR+GH+N ++LD +++   NG  + G + DC VC +GKS Q  HPK+     ++ PFQ V  D +GPF P A GG+KY +K  D  ++W  + L+
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLR-PFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLM 384

[Close]

BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.070e-20
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
              NA   HRRLGHLN R++  +++ + N   F  ++  CD+C + KS QLAHPKK    +   P  LVY D+MG   P A GG+ YVS   D +SR   ++LL
Sbjct:  103 TVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSR-ETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLL 204

[Close]

BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.240e-19
Identity = 44/103 (42.72%), Postives = 64/103 (62.14%), Query Frame = 0

Query:    4 VANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKSHQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRWNAVHLL 106
            V +A+LWHRR+GH+N + LD +++   NG  + G +  C VC +GKS Q  HPK+A    ++ PFQ    D +GPFAP A GG KY +K  D  ++W  + L+
Sbjct:   43 VESADLWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLR-PFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLM 141

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot

BLAST of mRNA_H-elongata_contig55408.12956.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KJN3_9PHAE	6.860e-25	44.66	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	6.960e-25	44.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	6.970e-25	44.66	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JBV6_9PHAE	1.750e-24	44.66	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KNH5_9PHAE	4.400e-24	45.36	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JYB5_9PHAE	5.330e-23	42.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBU1_9PHAE	7.220e-23	46.53	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KXM1_9PHAE	4.620e-22	42.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JT61_9PHAE	9.070e-20	42.72	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KL37_9PHAE	1.240e-19	42.72	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 58..106 e-value: 3.9E-6 score: 28.2
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 5..50 e-value: 2.3E-9 score: 37.0
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..106
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 6..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig55408	contig	H-elongata_contig55408:3513..3830 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig55408.12956.1	mRNA_H-elongata_contig55408.12956.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig55408 3513..3830 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig55408.12956.1 ID=prot_H-elongata_contig55408.12956.1|Name=mRNA_H-elongata_contig55408.12956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MNAVANAELWHRRLGHLNKRTLDFMQRHDGNGNTFDGTLADCDVCVVGKS
HQLAHPKKAENADIKTPFQLVYADLMGPFAPAAHGGYKYVSKITDHFSRW
NAVHLL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR025724	GAG-pre-integrase_dom
IPR039537	Retrotran_Ty1/copia-like