mRNA_H-elongata_contig55352.12954.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.300e-31 Identity = 92/202 (45.54%), Postives = 120/202 (59.41%), Query Frame = 3
Query: 666 LCPMQVPFQTSSQAAK----PHESSEIYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLL--------RGVMKGRAPPRISAANEDLAETVRADIELMTVTDDTKESNENLVGNVGEQPTVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPREVRPLLMALRVHPRRFVKLGIVDAKDL 1235
LCP + + + K P + +YK+AARNLREY+ VPSMTP KL++TL LKL P+RLVK+GLAP+ LL + P NEDLAE+V A +ELM++ DD KE N+ G V +P +N E +D AP+ K + IH A +A I++RPREVRPLL+AL V P R KLG+VD KDL
Sbjct: 97 LCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSLEDDKKEWND---GFVSVEP-ADTSSPDNDNEEKNDAVAPEVKKNL-IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDL 293
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 138 bits (347), Expect = 6.100e-31 Identity = 95/203 (46.80%), Postives = 123/203 (60.59%), Query Frame = 3
Query: 666 LCPMQVPFQTSSQ----AAKPHESSEIYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAA---------NEDLAETVRADIELMTVTDDTKESNENLVGNVGEQPTVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPREVRPLLMALRVHPRRFVKLGIVDAKDL 1235
LCP + + + A KP + +YK+AARNLREY+ VPSMTP KL++TL L+L P+RLVK+GLAP+ LL MK A + NEDLAE+V A +ELM+V DD KE N+ G V +P G N E +D AP+ K + IH A +A I++RPREVRPLL+AL V P R KLG+V+ KDL
Sbjct: 81 LCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLL-ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWND---GFVSVEPADTSSPG-NDNEEKNDAVAPEVKKNL-IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDL 277
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE) HSP 1 Score: 137 bits (346), Expect = 9.710e-31 Identity = 95/209 (45.45%), Postives = 121/209 (57.89%), Query Frame = 3
Query: 666 LCP----MQVPFQTSSQAAKPHESSEIYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAA---------NEDLAETVRADIELMTVTDDTKESNENLVGNVGEQP------TVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPREVRPLLMALRVHPRRFVKLGIVDAKDL 1235
LCP + + S A KP + +YK+AARNLREY+ VPSMT KLI+TL LKL P+RLVK+GLAP+ LL MK A + NEDLAE+V A +ELM+V DD KE N+ V + T K +N E ++ AP+ K + IH A + I++RPREVRPLL+AL V P R KLG+VD KDL
Sbjct: 99 LCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLL-ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDL-IHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDL 305
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.140e-30 Identity = 93/203 (45.81%), Postives = 118/203 (58.13%), Query Frame = 3
Query: 666 LCPMQVPFQTSSQAAK----PHESSEIYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAA---------NEDLAETVRADIELMTVTDDTKESNENLVGNVGEQPTVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPREVRPLLMALRVHPRRFVKLGIVDAKDL 1235
LCP + + + K P +YK+AARNLREY+ VPSMTP KL++TL LKL P+RLVK+GLAP+ LL MK + NEDLAE V A +E M+V DD KE N+ V + + + G E E DD AP+ K + IH A +A I++RPREVRPLL+AL V P R KLG+VD KDL
Sbjct: 108 LCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLL-ARMKAETANNAKLSKVRLGDGKNNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPAETSSSDNGNE---EENDDA-APEVKQNL-IHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDL 304
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE) HSP 1 Score: 135 bits (340), Expect = 7.770e-30 Identity = 95/209 (45.45%), Postives = 121/209 (57.89%), Query Frame = 3
Query: 666 LCPMQVPFQTSSQAAKPHESSE----IYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAA---------NEDLAETVRADIELMTVTDDTKESNENLVG-----NVGEQP-TVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPREVRPLLMALRVHPRRFVKLGIVDAKDL 1235
LCP + + + KP + +YK+AARNLREY+ VPSMT KLI+TL LKL PRRLVK+GLAP+ LL MK A + + NEDLAE+V A +ELM+V DD KE N V + P T K +N E +D AP+ K + IH A +A I++RPREVRPLL+AL V P R KLG+V+ K L
Sbjct: 81 LCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLL-ARMKAEAANNMKVSKVTLGDGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNL-IHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYL 287
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.920e-28 Identity = 92/203 (45.32%), Postives = 118/203 (58.13%), Query Frame = 3
Query: 666 LCPMQVPFQTSSQAAK----PHESSEIYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAA---------NEDLAETVRADIELMTVTDDTKESNENLVGNVGEQPTVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPREVRPLLMALRVHPRRFVKLGIVDAKDL 1235
LCP + + + K P ++YK+AARNLREY+ VPSMTP KL++TL LKL P+RLVK+GLAP+ LL MK A + NEDLAE+V A +ELM+V D KE N+ G V +P + E D AP+ K + IH A +A I++RPREVRPLL+AL V P R KLG+V KDL
Sbjct: 99 LCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLL-ARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDGKKEWND---GFVSVEPAEISFPANDNEEKND--AAPEAKKNL-IHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDL 294
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI) HSP 1 Score: 105 bits (263), Expect = 2.790e-21 Identity = 78/183 (42.62%), Postives = 104/183 (56.83%), Query Frame = 3
Query: 666 LCP----MQVPFQTSSQAAKPHESSEIYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAA---------NEDLAETVRADIELMTVTDDTKESNENLVGNVGEQP------TVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPRE 1157
LCP + + S A KP + +YK+AARNLREY+ VPSMTP KLI+TL LKL P+RLVK+GLAP+ LL MK A + NEDLA++V A +ELM+V +D KE N+ V + P T + +N E +D AP+ K + IH A +A I++RPRE
Sbjct: 96 LCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLL-ARMKAEAANNAKVSKVPLGDGKNNEDLADSVAAGMELMSV-EDKKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDAAPEVKKNL-IHKAFIAGGIQLRPRE 275
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE) HSP 1 Score: 103 bits (258), Expect = 7.850e-20 Identity = 104/280 (37.14%), Postives = 137/280 (48.93%), Query Frame = 3
Query: 681 VPFQTSSQAAKPHESSE-------IYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAANEDLAETVRADIELMTVTDDTKESNENLVGNVGEQPTVKEGGGENA-IEMTDDLE-APDRKPKMPIHAALVAADIKIRPREVRPLLMALRVHPRRFVKLGIVDAKDLHR-HPHGRG------RHDGKPYRPMGRRI-------GFLHPRSMVFAPPRIGADHAAPLVHRSPHPMKGHPIHEVR--HMHEGGPV 1445
V T+S A +E+ + +YK ARNLREYH VPSMT + L +T+ LL+L P RLV +GLAP KLL+G A A D + + +++E +++++N V + G E+ I + L +++ K P+HAALVAA I +RPRE RPLL AL V P R VKLG+V ++L R P GR RH G P P GR G PR PP G P HR H GH H+H GPV
Sbjct: 2 VSINTTSNNAMNNETMDSSNNGTLLYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADA----HADTTDSSGSSGSEVE-------PEQADDNQVSDDXXXXXXXSGDTEHDNIRKHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSRPGGRRGGPSHLRH-GHPGGPGGRXHXXXRGGRGMGRPRG----PPPYG-----PPPHRHVH---GHGKRRAHGDHLHSSGPV 257
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.220e-9 Identity = 57/163 (34.97%), Postives = 83/163 (50.92%), Query Frame = 3
Query: 732 IYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAANEDLAETVRADIELMTVTDDTKESNENLVGNVGEQPTVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPREVRPLLMALRVHPRRFVKLGIV 1220
++K AARNLREYH VPS+TP L T+ LL+L P RLV +GLAP+ LL KG + + A + D + A+ E ++N ++ + G + I + + R K PI A VA +++RPRE RPLL + + V L +V
Sbjct: 41 MFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILL----KGNSTAGVDADSTDGSGGFEAEEE---------QANNQFSHDLSSNSSDGGDTGNDNIVTQNSIGFEARASKHPIQAVFVAVGVQLRPRETRPLLRGVVLLTSSTVALEVV 190
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 1.850e-9 Identity = 53/147 (36.05%), Postives = 75/147 (51.02%), Query Frame = 3
Query: 732 IYKLAARNLREYHRVPSMTPNKLIRTLTLLKLGPRRLVKRGLAPRKLLRGVMKGRAPPRISAANEDLAETVRADIELMTVTDDTKESNENLVGNVGEQPTVKEGGGENAIEMTDDLEAPDRKPKMPIHAALVAADIKIRPREVRPLL 1172
+YK AARNL EYH VPSMT L +T+ LL+L P RLV +GLAP++LL G K A E+ D + +++ N + ++ + + D ++ K PIHA VAA +++RPRE RPLL
Sbjct: 51 LYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEG--KSAAGDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIEH----DHVATQDSIDIETGASKHPIHAVFVAAGVQLRPRETRPLL 191 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55352.12954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55352.12954.1 >prot_H-elongata_contig55352.12954.1 ID=prot_H-elongata_contig55352.12954.1|Name=mRNA_H-elongata_contig55352.12954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp MQVPFQTSSQAAKPHESSEIYKLAARNLREYHRVPSMTPNKLIRTLTLLKback to top mRNA from alignment at H-elongata_contig55352:2..2297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55352.12954.1 ID=mRNA_H-elongata_contig55352.12954.1|Name=mRNA_H-elongata_contig55352.12954.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2296bp|location=Sequence derived from alignment at H-elongata_contig55352:2..2297+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55352:2..2297+ >mRNA_H-elongata_contig55352.12954.1 ID=mRNA_H-elongata_contig55352.12954.1|Name=mRNA_H-elongata_contig55352.12954.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig55352:2..2297+ (Himanthalia elongata Himel1 dioecious)back to top |