mRNA_H-elongata_contig55349.12953.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A6H5KZ28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ28_9PHAE) HSP 1 Score: 181 bits (459), Expect = 1.220e-51 Identity = 98/187 (52.41%), Postives = 121/187 (64.71%), Query Frame = 2
Query: 29 ALTDSPFFRGVM-----DRTGGNGPDLLRHFSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEEVQPFIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSE-DDDAQRSGAKSEPSFKR--GKLWRLYDLKSWHLSCRIYEEFATDLFELE 565
AL S FFR + D+ G DL+ HF LERVVLTAN NLQR+ISSYYN+ VT+DV C EV P +Y+R+V + VLG FCVAKS+V++H P +A KTG + LGQLF + +I PRFELL AGR + ++ G + E R G WRLYDL+S H+SCRIYEEF DLF LE
Sbjct: 142 ALAGSLFFRKINGGRGGDKDGRREEDLIGHFDALERVVLTANANLQRVISSYYNSPVTVDVIFCTEVGPGVYDREVEISVLGHVFCVAKSLVVVHDPACAEAVKTGRVGLGQLFHSLNILPRFELLNAGRRVGRSARFSGNSDTIGGEKEGVCTRDDGGFWRLYDLRSGHVSCRIYEEFPPDLFGLE 328
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A835YNG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNG4_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.780e-38 Identity = 82/179 (45.81%), Postives = 108/179 (60.34%), Query Frame = 2
Query: 32 LTDSPFFRGVMDRTGGN--GPDLLRHFSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEEVQPFIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSEDDDAQRSGAKSEPSFKRGKLWRLYDLKSWHLSCRIYEEFATDLFEL 562
L D+P G D GG P +L F+P+ERVVLTANGNLQRIISSYYNA V + + C+ +YER V L V G +FC AKS+V+LHS +A +T ++ +GQLF+ P F LL G+ S D S P+ +WR+YDL+S HLSCRI E+FA +LF++
Sbjct: 99 LIDAPGHFG--DIMGGEPASPAILARFTPMERVVLTANGNLQRIISSYYNAPVDVHIHQCDRQGEHVYERLVTLSVGGVQFCEAKSIVVLHSDACIEAVETKSVGIGQLFRHLDTLPAFTLLSVGQHQPSPSSQTDTGAS-----PTSSISGIWRIYDLESKHLSCRIQEKFADNLFDM 270
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: W7TDI1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDI1_9STRA) HSP 1 Score: 126 bits (316), Expect = 4.740e-31 Identity = 70/178 (39.33%), Postives = 103/178 (57.87%), Query Frame = 2
Query: 47 FFRGVMDRTGGNGPD--LLRHFSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEEVQPFIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSEDDDAQ----RSGAKSEPSFKRGKLWRLYDLKS-WHLSCRIYEEFATDLFE 559
F G+ +R G + L FSPLERV L+A G+LQRIISSY+N+AVT+ +K C E++P +++R+V L V+G FC A S + +P + ++ LGQLF+ + P F LL GRT VE E+ D + R G G WR+Y+L ++CRI E F+++ F+
Sbjct: 108 FRSGISERVGSKDVEIRLPESFSPLERVALSAEGDLQRIISSYHNSAVTVRIKRCLEIEPGVFDREVDLSVMGHVFCTATSSLSARTPECAHLLREKSVGLGQLFRHLRVYPTFRLLDVGRTEVEDGEERDVEGLREREGG--------GGFWRVYELDCPGMINCRILERFSSNTFQ 277
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A7S2L0C0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L0C0_9STRA) HSP 1 Score: 113 bits (282), Expect = 8.260e-26 Identity = 61/160 (38.12%), Postives = 90/160 (56.25%), Query Frame = 2
Query: 104 FSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEEVQPF-------IYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSEDDDAQRSGAKSEPSFKRGKLWRLYDLKSWHLSCRIYEEFATDLFEL 562
FS L+R+ LTANGNLQRI+SS+Y++ VT+ V C E +++R V L V + FC A S + +H PM + ++G + LGQLF+ P F+LL AGRT + G +WRLY+LKS L+C I+E+F+ D++ +
Sbjct: 162 FSALDRIALTANGNLQRIVSSFYDSPVTVVVNSCVERPRLCASENAGVWDRSVDLKVYNKRFCRATSEITVHEPMCAELVRSGEVGLGQLFRYLDKLPTFDLLDAGRT---------------------ESGGMWRLYELKSKELTCSIFEDFSPDVWSM 300
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A1Z5JUV1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUV1_FISSO) HSP 1 Score: 107 bits (266), Expect = 6.520e-25 Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = 2
Query: 50 FRGVMDRTGGNGPDLLRHF---SPLERVVLTANGNLQRIISSYYNAAVTIDVKHCE--EVQPFIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSEDDDAQRSGAKSEPSFKRGKLWRLYDLKSWHLSCRIYEEFATDLFELEDR 571
F + T GN L F +PL+R+VLTANGNLQR+I+SYY+A V++ V+ C + P +++R V L VLG EFC A+S V + ++ +G + LGQLF+ ++ P F L +AG + G +WR Y L+ L+C+I EEF L+EL+ R
Sbjct: 10 FVDALTGTSGNATTLATAFGLTNPLDRLVLTANGNLQRLIASYYDADVSVRVEGCSFRQENPRVWDRTVYLEVLGVEFCRAESEVTIQQDSCQELVASGQVGLGQLFRYLNVLPMFFLREAGVDPI--------------------TGGIWREYTLQCDALTCQIREEFIPGLWELDHR 168
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A7S1C1D9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C1D9_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.020e-24 Identity = 70/185 (37.84%), Postives = 96/185 (51.89%), Query Frame = 2
Query: 68 RTGGNGPD---------LLRHFSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEE--------VQPFIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTT---VELSEDDDAQRSGAKSEPSFKRGKLWRLYDLKSWHLSCRIYEEFATDLFEL 562
RTG +G + L+ SPL+R+ LTANGNLQRI+SS+Y+A V++ V EE V +++R VAL+V FC A SVV +H ++G + LGQLF+ P+FEL+ AGRT V+ DD+ G+LWR Y L L C I EEF D + +
Sbjct: 31 RTGASGGEGRRSRRRDALVAALSPLDRIALTANGNLQRIVSSFYDAPVSVVVVRNEERASAASRRVPSAVWDRSVALVVHDTTFCRAASVVTVHDAGCAALVRSGKIGLGQLFRHLDRLPKFELVDAGRTRSIGVDGGADDE--------------GRLWRRYRLWCDELECDILEEFVADTWSI 201
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A0L0HN02_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HN02_SPIPD) HSP 1 Score: 103 bits (258), Expect = 2.750e-23 Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = 2
Query: 104 FSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEEVQP---------FIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSEDDDAQRSGAKSEPSFKRGKLWRLYDLKSWHLSCRIYEEFATDLFELE 565
FSP+ER++LTANGN+QRI+S+YYN+ V++D+ H E + ++ R+V L L + C AKS V + P + + +GQLF+ +I P FELL+ GRT WR YDL+S ++CRI EEF +F L+
Sbjct: 50 FSPMERILLTANGNVQRILSAYYNSTVSVDIIHNELINEESASNAETESVFRREVNLRCLNQICCNAKSTVTITDPEYLRLILEQQVGIGQLFRYLNILPEFELLQVGRTV----------------------NSFWREYDLRSNGVNCRIREEFPLGVFNLQ 190
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A7S3WYK2_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WYK2_9SPIT) HSP 1 Score: 107 bits (266), Expect = 4.180e-23 Identity = 68/179 (37.99%), Postives = 93/179 (51.96%), Query Frame = 2
Query: 80 NGPDLLRHFSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEEVQPFIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSEDDDAQRSGAKSEPSFKRGK--LWRLYDLKSWHLSCRIYEEFATDLFELEDR*VMLHEWIIKRLG 610
NG LR F PL RVV+TANGNLQR+ISSY+N V + H +V +ER+V L+ G EF VA S V + +A TG +A+GQLF+ +I P FELL AG ++ G+ WR Y L + C+I+E +D+F L+ +L E + R G
Sbjct: 31 NGSPALRDFEPLHRVVVTANGNLQRLISSYHNTRVEVRQVHSRQVAEGRFEREVVLVCFGVEFAVATSTVEISRADCLEAITTGGVAIGQLFRHLNILPVFELLGAG----------------------YEHGRQHFWRDYLLSGEGIHCKIHERIRSDVFALKP---LLTESVPSRAG 184
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A8J5XQW5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQW5_DIALT) HSP 1 Score: 102 bits (253), Expect = 2.250e-21 Identity = 68/171 (39.77%), Postives = 90/171 (52.63%), Query Frame = 2
Query: 56 GVMDRTGGNGPDLLRHFSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEEV--QPFIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSEDDDAQRSGAKSEPSFKRGKLWRLYDLKSWHLSCRIYEEFATDLFEL 562
G + RT L FSP ER+VLTANGNLQR+ISSYYN+ V++ VK +V YER+V L VLG F A S V+L A + +ALGQLF+ F + P FELL+A + + + SF+R Y L++ ++C I E F LF L
Sbjct: 10 GDIIRTSAPASQLPSGFSPEERIVLTANGNLQRLISSYYNSTVSVAVKRNAKVAGSDGHYEREVELSVLGVAFATASSAVVLSVDRLVDAVENHGVALGQLFRHFELLPTFELLRASK----------------RPDGSFERA-----YTLRATGITCTIVERFVPGLFTL 159
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Match: A0A7S2S6L3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S6L3_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.430e-21 Identity = 71/221 (32.13%), Postives = 101/221 (45.70%), Query Frame = 2
Query: 38 DSPFFRGVMDRTGGNGPDLLRH------FSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCE--------------------------EV--------------QPFIYERDVALMVLGREFCVAKSVVILHSPMSRKAFKTGTLALGQLFQAFHIRPRFELLKAGRTTVELSEDDDAQRSGAKSEPSFKRGKLWRLYDLKSWHLSCRIYEEFATDLFEL 562
+SP G++ GGN +H SPLER+ LTANGNLQRI SSYY+A V + V+ CE E+ Q +++R V L V + FCVA S V +H P+ ++ +G + +GQLF+ P FELL AGRT ED+ LWR Y+L+ L+C I E+F+ + + +
Sbjct: 190 ESPTKSGLVTADGGNLQSQFKHKIRNPSLSPLERIALTANGNLQRIFSSYYDAPVHVRVERCEIRLNHRHILEGDLQNSNNLNAAINPLEILSRSNGMASNYSLTQSTVWDRTVHLSVHNKIFCVAVSTVTVHCPLCKRLVDSGEVGIGQLFRHLDKLPTFELLDAGRT-----EDEG----------------LWRFYELRCKELTCEIREDFSMNAWTI 389 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55349.12953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55349.12953.1 >prot_H-elongata_contig55349.12953.1 ID=prot_H-elongata_contig55349.12953.1|Name=mRNA_H-elongata_contig55349.12953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp MDRTGGNGPDLLRHFSPLERVVLTANGNLQRIISSYYNAAVTIDVKHCEEback to top mRNA from alignment at H-elongata_contig55349:2234..3855+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55349.12953.1 ID=mRNA_H-elongata_contig55349.12953.1|Name=mRNA_H-elongata_contig55349.12953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1622bp|location=Sequence derived from alignment at H-elongata_contig55349:2234..3855+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55349:2234..3855+ >mRNA_H-elongata_contig55349.12953.1 ID=mRNA_H-elongata_contig55349.12953.1|Name=mRNA_H-elongata_contig55349.12953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig55349:2234..3855+ (Himanthalia elongata Himel1 dioecious)back to top |