mRNA_H-elongata_contig55339.12949.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI) HSP 1 Score: 326 bits (836), Expect = 7.320e-110 Identity = 151/251 (60.16%), Postives = 185/251 (73.71%), Query Frame = 1
Query: 1 MDEDSAVVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMASMAFW 753
+D SA +WYRTFTK+W KPSAIVV+SAHWEGRG+V+VT G KHPLF+DYYGFP + Y L Y PG P LA RI+ LL G ARG+ SRGYDHG F+PLKLMYPDAD+PVVQVSLL GLD E+HLK+G+ LK L+ + ++L++GSGQ+TH + Y K E F WLKETA P + P+ER+RRL EWE+ AP+ R AHPREEHLLPLHV + TGF PG +I+D+F G MS+A + FW
Sbjct: 4 IDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFW 254
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A1J4QGR4_9GAMM (Dioxygenase n=1 Tax=Oceanisphaera psychrotolerans TaxID=1414654 RepID=A0A1J4QGR4_9GAMM) HSP 1 Score: 223 bits (568), Expect = 2.990e-69 Identity = 116/221 (52.49%), Postives = 147/221 (66.52%), Query Frame = 1
Query: 19 VVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTG 681
+V+W + +P AI+++SAHWE +TAGA+ L YDYYGFP +Y++ Y CPGEPALA ++ L AG+PAR + RG+DHGVFVPLKLMYP+ADIP VQ+SL++ LD E+HL IG AL+ L D N+LVIGSG S HN A T R + F AWL++T +P L ERRRRL+ W+ AP+AR HPREEHLLPLHV G
Sbjct: 28 MVQWLQDMAGRLRRPEAILIVSAHWEAAVPT-ITAGARPGLIYDYYGFPPESYEIQYPCPGEPALAQQVQQALMAAGMPARLDAERGFDHGVFVPLKLMYPEADIPCVQLSLVSSLDAEQHLNIGRALQALDYD-NLLVIGSGFSFHNMQAFFTPGTPEIKARNQA-FEAWLEDTCGNPRLEEAERRRRLIHWDS-APHARFCHPREEHLLPLHVCYGLAG 244
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA) HSP 1 Score: 223 bits (567), Expect = 7.610e-69 Identity = 120/254 (47.24%), Postives = 159/254 (62.60%), Query Frame = 1
Query: 1 MDEDSAVVEWYRTFTKEWPKPSAIVVISAHWEGRG-SVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVE---FAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMASMAF 750
+D++S V +R + PKP IV+ +AHWE G +RVT L YDYYGFP TY+L+Y PG+P LA I+ LL+ AG+ A E RG+DHGVF+PLK++YPDAD+PVV +SL + LD H+ +G+AL L +LV GSG +THN ++ + + +E F WLK T D + QER RRLL W + AP+AR +HPREEHLLPLHV + GF+ G ++ D V G MSMAS AF
Sbjct: 36 IDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLA-GRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDG-VSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAF 287
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: UPI001F2DEB7A (dioxygenase n=2 Tax=unclassified Microbulbifer TaxID=2619833 RepID=UPI001F2DEB7A) HSP 1 Score: 222 bits (566), Expect = 7.930e-69 Identity = 116/208 (55.77%), Postives = 143/208 (68.75%), Query Frame = 1
Query: 58 KPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTG 681
+PSAI+VISAHWE + +TAGA+ PL YDY+GFP Y + Y CPGEPALA ++ L++AG+PAR ++ RG+DHG+FVPLKLMYP+ADIP VQ+SL+ LD EHL IG AL+ L D N+LV+GSG S HN A +R + F WL ET TDP +P R RLL WE+ AP+AR HPREEHLLPLHV TG
Sbjct: 50 RPSAILVISAHWE-QSVPTITAGARPPLIYDYHGFPEEAYDIQYPCPGEPALAGQVHQALKQAGIPARLDQQRGFDHGLFVPLKLMYPEADIPCVQLSLVNSLDAGEHLAIGRALRALDYD-NLLVVGSGFSFHNMQAFFAPDNPEIQVR-NLAFEDWLHETCTDPTIPESRRTERLLHWER-APHARFCHPREEHLLPLHVCYGLTG 253
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: UPI001247FA37 (dioxygenase n=1 Tax=Marinobacter TaxID=2742 RepID=UPI001247FA37) HSP 1 Score: 220 bits (560), Expect = 4.690e-68 Identity = 114/202 (56.44%), Postives = 142/202 (70.30%), Query Frame = 1
Query: 58 KPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHV 663
KPSAI+VISAHWE +TAGAK PL YDYYGFP Y++ Y CPGEPALA ++ L +AG+P R ++ RG+DHG+FVPLKLMYPDADIP +Q+SL++ LD HL IG AL+ L D N+LVIGSG HN A + T R + F WL++T D +LP ER +RL++WE+ AP+AR HPREEHLLPLHV
Sbjct: 41 KPSAILVISAHWE-ESVPTITAGAKPPLIYDYYGFPPEAYEIEYPCPGEPALAQQVYQALDQAGIPVRLDEQRGFDHGLFVPLKLMYPDADIPCIQLSLVSSLDAGTHLAIGRALQALDYD-NLLVIGSGFLFHNMRAFFSKQTPDIQARNQA-FEEWLEQTCGDTNLPESERAKRLVDWER-APHARFCHPREEHLLPLHV 238
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: UPI001402F277 (dioxygenase n=2 Tax=Marinobacter TaxID=2742 RepID=UPI001402F277) HSP 1 Score: 219 bits (558), Expect = 9.710e-68 Identity = 120/234 (51.28%), Postives = 154/234 (65.81%), Query Frame = 1
Query: 58 KPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEM--SMASMAFW 753
KPSAI+VISAHWE +TAGA L YDYYGFP +Y++ Y PGEPALA +I L AGLPAR ++ RG+DHG+FVPLKLMYPDADIP VQ+SL+ LD E HL +G AL++L EN+LVIGSG S HN A ++ + R + F AWL+ET +DP +P +R RL W++ AP+AR HPREEHL+PLHV G + DE + ++ M+ M +W
Sbjct: 41 KPSAILVISAHWE-EAVPTITAGAHPSLIYDYYGFPPESYEIQYPSPGEPALAGQIAAALERAGLPARLDRERGFDHGLFVPLKLMYPDADIPCVQLSLVNTLDAETHLAMGRALQSL-DYENLLVIGSGFSFHNMRAFYSAVSSDDEARNQA-FEAWLEETCSDPAMPESQREDRLAHWDQ-APHARFCHPREEHLMPLHVCYGLAGKAS-----DEHLSAQILGKMSGMYYW 265
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A7T1Y7Q8_9GAMM (Dioxygenase n=2 Tax=Halomonadaceae TaxID=28256 RepID=A0A7T1Y7Q8_9GAMM) HSP 1 Score: 217 bits (553), Expect = 3.160e-67 Identity = 122/232 (52.59%), Postives = 150/232 (64.66%), Query Frame = 1
Query: 58 KPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMASMAFW 753
+PSAI+VISAHWE +TAGA L YDYYGFP +Y++ Y CPGEPALA +I LR+AGLPAR ++ RG+DHG+FVPLKLMYP+ADIP VQ+SL+ LD HL IG AL+ L D+ +LVIGSG S HN A T R + F AWL+ET +D L +R RLL+WE+ AP+AR HPREEHLLPLHV G P + G+ S M +W
Sbjct: 25 RPSAILVISAHWEAAVPT-ITAGANPALIYDYYGFPPESYEIEYPCPGEPALARQIHQALRQAGLPARLDEHRGFDHGLFVPLKLMYPEADIPCVQLSLVDSLDAATHLAIGRALRALEVDD-LLVIGSGFSFHNMQAFFAPATPELDARNQA-FEAWLEETCSDARLTEAQRTERLLQWER-APHARFCHPREEHLLPLHVCYGLAG-QPSETHVSATILGKRS--GMFYW 249
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A3N5ITC8_9BACT (Dioxygenase n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3N5ITC8_9BACT) HSP 1 Score: 216 bits (550), Expect = 7.670e-67 Identity = 118/242 (48.76%), Postives = 157/242 (64.88%), Query Frame = 1
Query: 19 VVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVE--FAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYDEFVPGEMSMA 738
+V++ ++ T E+ P+AI+V+SAHWE R + +T+G+ LFYDYYGFP Y++ Y PG+PALAD I LL+E AR + RG+DHG+FVPLK+MYPDA IP VQ+SL+ GL E H+++G+AL L Q +N+L++GSG S HN A + R M+ F WL +T TD HL QER RL+ WE AP AR HPREEHLLPLHV G + V Y+E + G+ S A
Sbjct: 12 MVQFLQSITSEFEPPAAILVVSAHWEARRTT-ITSGSSPALFYDYYGFPDEAYKIQYPAPGDPALADLIFQLLQEHEFDARLDAERGFDHGLFVPLKIMYPDAHIPCVQLSLVQGLAAETHIRVGKALSALRQ-KNVLILGSGFSFHNMQA----FMSRGGMQDSKNDAFQKWLIDTCTDLHLSEQERESRLVHWES-APFARYCHPREEHLLPLHVCYGIAGTAAKLVFYEEIL-GKKSCA 245
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: A0A2D9ZYQ0_9GAMM (Dioxygenase n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2D9ZYQ0_9GAMM) HSP 1 Score: 216 bits (551), Expect = 9.790e-67 Identity = 117/230 (50.87%), Postives = 147/230 (63.91%), Query Frame = 1
Query: 19 VVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHNFSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTGFSPGRVIYD 708
+V+ E KP AI+V+SAHWE VT A LFYDYYGFP +Y + Y CPGEP LA +++ +L AG+PA+ + RG DHGVFVPLKL+YP+ADIP +Q+SL GLD EH++IGEAL+ L D N+L+IGSG S HN A T + +M FA WL +T D LP ER +RL+EWEK AP AR HPREEHL+PL V G + + IYD
Sbjct: 27 MVQCLTAMNGELRKPDAILVVSAHWEATIPT-VTTAANPSLFYDYYGFPEESYHIQYPCPGEPELAQQVMDVLTVAGIPAKSDGQRGLDHGVFVPLKLLYPEADIPTIQLSLKKGLDAAEHIRIGEALRGLNYD-NLLIIGSGFSFHNMRAFFTPETP-EIRQMNQAFAEWLNQTCGDTALPESERAQRLIEWEK-APAARFNHPREEHLIPLMVCYGLAGRASSK-IYD 251
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Match: UPI001F2A0FB6 (dioxygenase n=1 Tax=Microbulbifer sp. TT37 TaxID=2904250 RepID=UPI001F2A0FB6) HSP 1 Score: 216 bits (551), Expect = 1.140e-66 Identity = 118/211 (55.92%), Postives = 140/211 (66.35%), Query Frame = 1
Query: 61 PSAIVVISAHWEGRGSVRVTAGAKHPLFYDYYGFPRHTYQLSYDCPGEPALADRILGLLREAGLPARGEKSRGYDHGVFVPLKLMYPDADIPVVQVSLLAGLDEEEHLKIGEALKTLLQDENILVIGSGQSTHN----FSASSNSYTRRKYMRMEVEFAAWLKETATDPHLPPQERRRRLLEWEKVAPNARVAHPREEHLLPLHVVSAYTG 681
PSAI+VISAHWE + +TAGA PL YDY+GFP Y + Y CPGEPALA ++ +L EAG+PAR + RG+DHG+FVPLKLMYPDADIP VQ+SL+ LD EHL IG AL+ L D N+LVIGSG S HN F+ S R + F WL ET TDP +P +R RL WE+ AP+AR HPREEHLLPLHV G
Sbjct: 43 PSAILVISAHWE-QPVPTITAGANPPLIYDYHGFPPEAYDIQYPCPGEPALAGQVHQVLEEAGIPARLDHQRGFDHGLFVPLKLMYPDADIPCVQLSLVNSLDAGEHLAIGRALQALDYD-NLLVIGSGFSFHNMRAFFAPDSPGIQARN-----LAFEDWLHETCTDPTMPEPQRAERLAHWER-APHARFCHPREEHLLPLHVCYGLAG 245 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55339.12949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55339.12949.1 >prot_H-elongata_contig55339.12949.1 ID=prot_H-elongata_contig55339.12949.1|Name=mRNA_H-elongata_contig55339.12949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp MDEDSAVVEWYRTFTKEWPKPSAIVVISAHWEGRGSVRVTAGAKHPLFYDback to top mRNA from alignment at H-elongata_contig55339:477..2835+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55339.12949.1 ID=mRNA_H-elongata_contig55339.12949.1|Name=mRNA_H-elongata_contig55339.12949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2359bp|location=Sequence derived from alignment at H-elongata_contig55339:477..2835+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55339:477..2835+ >mRNA_H-elongata_contig55339.12949.1 ID=mRNA_H-elongata_contig55339.12949.1|Name=mRNA_H-elongata_contig55339.12949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig55339:477..2835+ (Himanthalia elongata Himel1 dioecious)back to top |