mRNA_H-elongata_contig55321.12948.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: D7FU98_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU98_ECTSI) HSP 1 Score: 181 bits (459), Expect = 1.100e-55 Identity = 101/156 (64.74%), Postives = 120/156 (76.92%), Query Frame = 1
Query: 1 GPGTQQLSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWFLTNSEVGQNVAKASSVKTGKASKSGNTSSGSSPPPAPSSTPF---REGETSTKDRSRRALDADLIESVVIDVDGD 459
GPGTQQLSR+AKLAISVLIDLIG+SSY +PG+GE +D+GWAPISSALIFYLYGNSIFAGLAFVEEILPG D IPTATIAWFLTNSE+GQNV A++ K + G+ SS + PPPA S PF + + K R +D +++S VIDVD +
Sbjct: 19 GPGTQQLSRQAKLAISVLIDLIGMSSYALPGVGEATDLGWAPISSALIFYLYGNSIFAGLAFVEEILPGFDVIPTATIAWFLTNSEIGQNVTNAAAGKKPE----GDVSSSAPPPPAGS--PFSKLNDAREAGKGAGSRKVDDGMVQSGVIDVDSE 168
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: A0A7S3ZL34_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZL34_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.670e-35 Identity = 58/91 (63.74%), Postives = 74/91 (81.32%), Query Frame = 1
Query: 1 GPGTQQLSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWFLTNSEVGQNV 273
G G +L+R+ KL +S+LIDLIG+S+Y +P GE +DVGWAP+S+ALIF+LYG+ IFA F EEILPGLDF+PTATIAWFLT S+ GQ +
Sbjct: 44 GGGASELTREGKLIVSILIDLIGMSTYLLPVAGEGADVGWAPVSAALIFWLYGSGIFAAAGFAEEILPGLDFVPTATIAWFLTQSDAGQRI 134
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: R1CZS3_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZS3_EMIHU) HSP 1 Score: 116 bits (291), Expect = 5.990e-30 Identity = 55/95 (57.89%), Postives = 73/95 (76.84%), Query Frame = 1
Query: 1 GPGTQQLSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWFLTNSEVGQNVAKAS 285
GP ++L KL +S+LIDL+GV+SY VP GE +D+ WAP+S+ L+ YLYGNSI GLAF EE+LPGLD +PTATI W L N+E+G++V +AS
Sbjct: 74 GPDNERL---IKLLVSILIDLVGVASYAVPLAGEGADLAWAPVSALLVNYLYGNSILTGLAFAEEVLPGLDVVPTATIGWLLENTELGRSVNEAS 165
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: A0A7S2RIK8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIK8_9STRA) HSP 1 Score: 117 bits (292), Expect = 6.780e-30 Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 1
Query: 1 GPGTQQ-LSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWFLTNSEVGQ 267
GPG + S++ KL +S+L+DL+G+S+Y +PG+GE D+ WAPIS+ L+ YLYGN+ +GLA VEE+LPGLDFIPTATIAWF+T V +
Sbjct: 65 GPGGEAGASKETKLLLSLLVDLVGMSTYALPGVGEAGDIAWAPISAILVQYLYGNAALSGLALVEELLPGLDFIPTATIAWFITYGTVSE 154
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: A0A7S4E380_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E380_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.080e-28 Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 1
Query: 1 GPGTQQLSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIA 237
G G +L+R+ KL +S+LIDLIG+S+Y +P GE +DVGWAP+S+ALIF+LYG+ IFA F EEILPGLDF+PTATIA
Sbjct: 44 GGGASELTREGKLIVSILIDLIGMSTYLLPVAGEGADVGWAPVSAALIFWLYGSGIFAAAGFAEEILPGLDFVPTATIA 122
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: A0A7S3AG80_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AG80_9EUKA) HSP 1 Score: 111 bits (278), Expect = 4.480e-28 Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1
Query: 13 QQLSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWFLTNSEVGQN 270
+Q ++ KL IS+LIDLIG+++Y P +GE D+ WAPIS+ LI LYGN++ GLAF EE+LPGLD IPTATIAW L N+E GQN
Sbjct: 65 EQQAKLGKLLISLLIDLIGMATYVFPLVGETGDLAWAPISALLINQLYGNALITGLAFAEELLPGLDIIPTATIAWVLENTEFGQN 150
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: A0A6U9ZMF8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6U9ZMF8_9STRA) HSP 1 Score: 112 bits (280), Expect = 7.440e-28 Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 1
Query: 4 PGTQQLSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWFLTNS 255
PG + KL + +LID IGV+S+ PGLGE +DVGWAPIS+ L+ YL+GN +F LA VEE+ PG DF+PTATIAWFL NS
Sbjct: 107 PGGADMDPGLKLLVCILIDFIGVASFAAPGLGEATDVGWAPISAFLVNYLFGNGLFTALALVEELSPGFDFVPTATIAWFLENS 190
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: A0A7S2CFZ0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFZ0_9STRA) HSP 1 Score: 106 bits (264), Expect = 3.010e-26 Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 10 TQQLSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWFLTN 252
TQ+ + KL +S+LID +G +S+ +PGLGE +D+GWAPIS LI +LYGNS+ +GL FVEEILPG DFIPTATI N
Sbjct: 68 TQEQEKAVKLLLSLLIDFVGYASFALPGLGEATDIGWAPISGILIQFLYGNSLLSGLGFVEEILPGFDFIPTATIGTLSCN 148
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: A0A448ZPQ8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPQ8_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.440e-26 Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 1
Query: 34 KLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWFLTNS 255
KL + +LID IGV+S+ PGLGE +D GWAPIS+ L+ YL+GN +F LA VEE+ PGLDF+PTATIAWFL N+
Sbjct: 128 KLLVCLLIDFIGVASFAAPGLGEATDAGWAPISALLVNYLFGNGLFTALALVEELSPGLDFVPTATIAWFLENA 201
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Match: F0YF75_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YF75_AURAN) HSP 1 Score: 102 bits (255), Expect = 5.800e-26 Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 34 KLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYLYGNSIFAGLAFVEEILPGLDFIPTATIAWF 243
KL + V IDL+G S+Y +P +GE DVGWAP+ +AL+ YL+GN + G AF+EEILPG DFIPTATIAWF
Sbjct: 3 KLILCVAIDLVGASTYAIPAIGEGFDVGWAPVQAALVNYLFGNGLITGFAFLEEILPGTDFIPTATIAWF 72 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55321.12948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig55321.12948.1 >prot_H-elongata_contig55321.12948.1 ID=prot_H-elongata_contig55321.12948.1|Name=mRNA_H-elongata_contig55321.12948.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp GPGTQQLSRKAKLAISVLIDLIGVSSYTVPGLGELSDVGWAPISSALIFYback to top mRNA from alignment at H-elongata_contig55321:211..2969- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig55321.12948.1 ID=mRNA_H-elongata_contig55321.12948.1|Name=mRNA_H-elongata_contig55321.12948.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2759bp|location=Sequence derived from alignment at H-elongata_contig55321:211..2969- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig55321:211..2969- >mRNA_H-elongata_contig55321.12948.1 ID=mRNA_H-elongata_contig55321.12948.1|Name=mRNA_H-elongata_contig55321.12948.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig55321:211..2969- (Himanthalia elongata Himel1 dioecious)back to top |