mRNA_H-elongata_contig55304.12945.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55304.12945.1
Unique NamemRNA_H-elongata_contig55304.12945.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig55304.12945.1 vs. uniprot
Match: D8LRI8_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI8_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 7.130e-43
Identity = 77/116 (66.38%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:    1 QIEAGLSAVQLAFLSSAGEEQKRRLLLQCLEYANGDVTQAKRVCTAFCDFRLEEGWSMVLSASELRDPLRSRVHTLTERRDSLGRAMMTFSPGALDITKAPAVAYHKMLCYVLQEV 348
            Q+ AGLS  +L F+ SAG+E+K RLL QCLEYAN D+  A +VC+ FC FRL+EGW +VLSA EL  PLRSRVHTLT  RD  GR ++TFSPG LD+ KAP  AYHKMLCYVLQEV
Sbjct:  587 QLLAGLSKTELEFVESAGDEEKTRLLHQCLEYANYDMAGAIKVCSTFCKFRLQEGWDLVLSAPELETPLRSRVHTLTTNRDRTGRGVLTFSPGKLDMDKAPPAAYHKMLCYVLQEV 702
[Close]
BLAST of mRNA_H-elongata_contig55304.12945.1 vs. uniprot
Match: A0A6H5JJW0_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW0_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 7.710e-43
Identity = 77/116 (66.38%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:    1 QIEAGLSAVQLAFLSSAGEEQKRRLLLQCLEYANGDVTQAKRVCTAFCDFRLEEGWSMVLSASELRDPLRSRVHTLTERRDSLGRAMMTFSPGALDITKAPAVAYHKMLCYVLQEV 348
            Q+ AGLS  +L F+ SAG+E+K RLL QCLEYAN D+  A +VC+ FC FRL+EGW +VLSA EL  PLRSRVHTLT  RD  GR ++TFSPG LD+ KAP  AYHKMLCYVLQEV
Sbjct:  622 QLLAGLSKKELEFVESAGDEEKTRLLQQCLEYANYDMAGAVKVCSTFCKFRLQEGWDLVLSARELETPLRSRVHTLTTNRDRTGRGVLTFSPGKLDMDKAPPAAYHKMLCYVLQEV 737
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55304.12945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRI8_ECTSI7.130e-4366.38CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJW0_9PHAE7.710e-4366.38CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55304contigH-elongata_contig55304:605..3766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue4.7e-37
Seed eggNOG ortholog2880.D8LRI8
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55304.12945.1prot_H-elongata_contig55304.12945.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55304 605..3766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.8008971-CDS-H-elongata_contig55304:604..7311622930901.8008971-CDS-H-elongata_contig55304:604..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55304 605..731 -
1691679617.7330658-CDS-H-elongata_contig55304:604..7311691679617.7330658-CDS-H-elongata_contig55304:604..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55304 605..731 -
1622930901.8149438-CDS-H-elongata_contig55304:3295..34561622930901.8149438-CDS-H-elongata_contig55304:3295..3456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55304 3296..3456 -
1691679617.7439072-CDS-H-elongata_contig55304:3295..34561691679617.7439072-CDS-H-elongata_contig55304:3295..3456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55304 3296..3456 -
1622930901.835039-CDS-H-elongata_contig55304:3682..37661622930901.835039-CDS-H-elongata_contig55304:3682..3766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55304 3683..3766 -
1691679617.7530482-CDS-H-elongata_contig55304:3682..37661691679617.7530482-CDS-H-elongata_contig55304:3682..3766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55304 3683..3766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55304.12945.1

>prot_H-elongata_contig55304.12945.1 ID=prot_H-elongata_contig55304.12945.1|Name=mRNA_H-elongata_contig55304.12945.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
QIEAGLSAVQLAFLSSAGEEQKRRLLLQCLEYANGDVTQAKRVCTAFCDF
RLEEGWSMVLSASELRDPLRSRVHTLTERRDSLGRAMMTFSPGALDITKA
PAVAYHKMLCYVLQEVRDVLFSS*
back to top

mRNA from alignment at H-elongata_contig55304:605..3766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55304.12945.1 ID=mRNA_H-elongata_contig55304.12945.1|Name=mRNA_H-elongata_contig55304.12945.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3162bp|location=Sequence derived from alignment at H-elongata_contig55304:605..3766- (Himanthalia elongata Himel1 dioecious)
CAGATTGAGGCGGGACTGTCGGCGGTTCAGCTTGCATTCCTAAGCTCCGC
GGGAGAAGAACAAAAGAGAAGGCTGCTGCTTCAGGTGCATCTTGCCTTTC
GATGCTGTACGGCCGTCACAAACAAAGCGCGCGGTATGCCTGCCAGTGAC
ATGGAAGGCGTTTTTTTTGCGGAAGGGCGCCTCACGAACGCATGACGCCG
TCCTTGATTCTTGATCCCCGTTCGCGATCTCGCCTGAATTCTCCTTCTAC
AGTATTTTTTTTAACTTTTTTTTTTTTCATTCCTTTCTCTTGCGTCCAAT
TTGTCAAAAGTGCCTGGAGTACGCTAACGGCGACGTTACTCAAGCAAAAA
GAGTGTGTACAGCCTTCTGCGATTTTCGGCTAGAGGAAGGGTGGAGCATG
GTGCTCTCAGCCTCCGAGCTGCGGGACCCTCTTCGGAGCAGGGTTCATAC
CTTGACAGAACGACGAGATAGGTGAGGAGGCGGCATTTATTTTGGACACG
TATATCACACCACCTCTGCTAGCCTAGTAGTGACCTGACAGTCCTGTACT
TTCTTGGGTTTCTTTTTTTATTTGTACAATTCGCCCGATTTTTCTCCGAG
ATGTTTTTAGTTTTCGTTTTTTATTTTATGTTGTCTCCTGCATTGAGAAC
ATAGGCCCAGTGGTCATCACAATAATGCAATAATACACAATACACTAATA
ATAGTGCAATATAGCTGTGGAACTGGGGATAAGGCTGTATCATACACTAT
TACACTAATAATAGGGCAATATAGCTGGAACTGGGGTTAGGGCTGTATCA
TACCACGAAACTGAGGTGTTCGGGGTGTCTCTACACCTTAACTATGCATC
TCACTAACGCCGCCATTAGTCGGAGCGAGCTACCCCTTCGTTAGCCATCG
TACAGTTGGAACTATGTGTATATTGTATTGATGTATTGATGTATTGATGT
ACCCCTTTTTGCCTCAAAATCAACTGGAAAACTACGGCGGCACAACTGAG
TCAGTCATAGACCTATCAAATTTCAACTCGTTCAGTCGACCCCAAGAGGC
CCGAAGATCAACGGGCCATATTTTCGTGACGTCACGCCGCGACACGCGCG
CACCACCAGGGATGATCCAAACAATCGTGAGGCGCGCGCACCATCCTCGT
GAGATTTGACCGCCCGAGAACAGCTAAAATTATCCTCTGGTATCCTTCGG
GACGAACTATCTACGTTATAGCATAGTGTGTAGTATCTACAGTATAGTAT
GTGTATAGTATCTACAGTATAGTATGGTGTATAATATCTACCGTATAGTA
TGGTGTATAATATCTACAGTATAGTATAGTGTATAGTATCTACAGTATAG
TATGGTGTATAATATCTACAGTATAGTATAGTGTATGATATCTACAATAT
AGTATAGTGTATAATATCTACAGTATCTACAGTATAGTATAGTGTATAAT
ATCTACAGTATAGTATAGTGTATAATATCTACAGTTTAGTATAGTGTATA
ATATCTACAGTATAGTATAGTGTATAATATCTACAGTATAGTATAGTGTA
TAATATCTACAATATAGTATAGTGCATAATATCTACAGTATAGCATAGTG
TATAGTATCTACATTATAGTATGGTGTATAGTATCTACAATATAGTATGG
TGTATAGTATCTACAGTATAGTATGGTGTATAATATCTACAGCATAGTAT
GGTGTATAATATATACAGTATAGTATGATGTATAATATATACAGTATAGT
ATGGTGTATAATATATACAGTATAGTATGATGTATAATATCTACAGTATA
GTATGGTGTATAATATATACAGTATAGCATAGTGTATAGTATCTACATTA
TAGTATGGTGTATAATATATACAGTATAGTATGATGTATAATATATACAG
TATAGTATGATGTATAATATCTACAGTATAGTATAGTGTTTAATATCTAC
AGTATAGTATGGTGTATAATATCTACAGTATAGTATAGTGTATAATATCT
ACAGTATAGTATGGTGTATAATATCTACAGTATAGTATGGTGTATAATAT
CTACAGTATAGTATGGTGTATAATATCTACAGCATAGTATGGTGTATAAT
ATCTACAGTATAGTATGATGTATAATATCTACAGTATAGTATGGTGTATA
ATATCTACAGTAAAGCATAGTGTATATTATCTACAATATAGTATGGTGTA
TAGTATCTACAATATAGTATGGTGTATAGTATCTACAATATAGTATAGTG
TATAGTATCTACAGTATAGTATGGTGTATAATATATACAGTATCGTATGA
TGTATAATATATACAGTATAGTATGGTGTTTAATATATACAGTATAGTAT
GGTGTATAATATCTACAGTATAGTGTGGTGTATAATATCTACAGTATAGC
ATAGTCTATAGTATCTACATTATAGTATGGTGTATAATATATACAGTATA
GTATAGGGTATAGTATACCTGGTATGCAGTTAGTTTCTAAGTATTCTGCT
TGTAGGCCACACTCTGGATTACAGTCTATTGTGTGTTCTTGTATACAAAT
AATCTTCCATGATATCGTTGTCGGTTGTCGGTAGGCTACACCCAAACAAG
GAGCGCGGTCTTAAAATACACAACCTCTCCGTGCCGGGCAAACTATGGAA
AACGGCAGAACGAAGGAAAACTCGAACAAAGTATGATATGATTTAGGTAC
AGTACTCATTAATGTGTGGTTAGACGGTAACGACAATATCATGCACCGTA
CAGCAGTATTTACGGAGTCACACACTTAATGGCCTATCACAACCAGAGTT
GTTTGAATATTTTGTGAAAGCATGAAGCAGTGTTTAATAGGGGTTCTAAA
TATGTAGGTTATTTTGGAACAGGAGAACAGTAAGTAATAGAGCCTATCCA
ATAGATGTTGCCAGCGTCTAGGAGAGAAGTCCACCACACGCTTAGGGATT
GATCTTTGCCACGTGTCATCGCGTCCCCGGGTGCCGTTCGCCTTAAAATC
AAAACGAAAACATTTTCCGCCACGGATGACGACAGCTTGGGACGAGCCAT
GATGACCTTCTCCCCAGGGGCGTTGGACATCACCAAGGCGCCCGCTGTGG
CTTATCACAAGATGCTGTGCTACGTTCTGCAAGAGGTGCGGGACGTTTTA
TTTTCATCGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig55304:605..3766-

>mRNA_H-elongata_contig55304.12945.1 ID=mRNA_H-elongata_contig55304.12945.1|Name=mRNA_H-elongata_contig55304.12945.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig55304:605..3766- (Himanthalia elongata Himel1 dioecious)
CAGATTGAGGCGGGACTGTCGGCGGTTCAGCTTGCATTCCTAAGCTCCGC
GGGAGAAGAACAAAAGAGAAGGCTGCTGCTTCAGCAGATTGAGGCGGGAC
TGTCGGCGGTTCAGCTTGCATTCCTAAGCTCCGCGGGAGAAGAACAAAAG
AGAAGGCTGCTGCTTCAGTGCCTGGAGTACGCTAACGGCGACGTTACTCA
AGCAAAAAGAGTGTGTACAGCCTTCTGCGATTTTCGGCTAGAGGAAGGGT
GGAGCATGGTGCTCTCAGCCTCCGAGCTGCGGGACCCTCTTCGGAGCAGG
GTTCATACCTTGACAGAACGACGAGATAGTGCCTGGAGTACGCTAACGGC
GACGTTACTCAAGCAAAAAGAGTGTGTACAGCCTTCTGCGATTTTCGGCT
AGAGGAAGGGTGGAGCATGGTGCTCTCAGCCTCCGAGCTGCGGGACCCTC
TTCGGAGCAGGGTTCATACCTTGACAGAACGACGAGATAGCTTGGGACGA
GCCATGATGACCTTCTCCCCAGGGGCGTTGGACATCACCAAGGCGCCCGC
TGTGGCTTATCACAAGATGCTGTGCTACGTTCTGCAAGAGGTGCGGGACG
TTTTATTTTCATCGTAACTTGGGACGAGCCATGATGACCTTCTCCCCAGG
GGCGTTGGACATCACCAAGGCGCCCGCTGTGGCTTATCACAAGATGCTGT
GCTACGTTCTGCAAGAGGTGCGGGACGTTTTATTTTCATCGTAA
back to top