prot_H-elongata_contig116417.1291.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig116417.1291.1
Unique Nameprot_H-elongata_contig116417.1291.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length82
Homology
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: D8LGM6_ECTSI (RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.030e-38
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 0
Query:    1 QESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFKVCGGGR 82
            +ESL+V  +AK+ M+ ANMRMVISIARKYQ++GVPL DLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQA+FKV  G R
Sbjct:   73 EESLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKVRAGRR 154          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A6H5LBV0_9PHAE (RNA_pol_sigma70 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV0_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.130e-35
Identity = 64/76 (84.21%), Postives = 72/76 (94.74%), Query Frame = 0
Query:    1 QESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 76
            +ESL+VC +AK+ M+ ANMRMVISIARKYQ++GVPL DLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQA+FK
Sbjct:  331 EESLKVCGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFK 406          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A7S2Y444_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y444_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.700e-28
Identity = 47/67 (70.15%), Postives = 59/67 (88.06%), Query Frame = 0
Query:   10 AKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 76
            AK+ M+++NMR+V+SIARKY N+GV L DL+QEGSLGL RA EKFDP +GFK STY++WWIQQAVF+
Sbjct:    8 AKQTMVQSNMRLVVSIARKYMNVGVSLHDLVQEGSLGLSRAAEKFDPLKGFKFSTYASWWIQQAVFR 74          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A835YXH6_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.060e-27
Identity = 47/71 (66.20%), Postives = 61/71 (85.92%), Query Frame = 0
Query:    7 CSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFKV 77
            C  AK AM+ +NMR+VI++A++Y  MGVPL+DL+QEGSLGL+RA EK+DP +GFK STY+AWWIQQA+FK 
Sbjct:  142 CLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKA 212          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A1Z5JZN1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZN1_FISSO)

HSP 1 Score: 112 bits (280), Expect = 4.130e-27
Identity = 50/75 (66.67%), Postives = 63/75 (84.00%), Query Frame = 0
Query:    2 ESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 76
            E +  C  AK+ M+++NMR+V+SIARKY N+GV L DLIQEGSLGL RA EKFDP++GFK STY++WWIQQAVF+
Sbjct:  375 ELMMTCREAKQKMVQSNMRLVVSIARKYSNVGVGLQDLIQEGSLGLSRAAEKFDPKKGFKFSTYASWWIQQAVFR 449          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A835ZEC7_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.310e-26
Identity = 44/68 (64.71%), Postives = 61/68 (89.71%), Query Frame = 0
Query:   10 AKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFKV 77
            AK AM+ +NMR+VI++A++Y  MGVPL+DL+QEGSLGL+RA EK+DP++GF+ STY+AWWIQQA++K 
Sbjct:  123 AKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKA 190          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A7S2XUY2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUY2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.410e-26
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 0
Query:    1 QESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAV 74
            Q+ L +C  A+  M+  NMR+VISIA+KYQN+GV L DLIQEG++GLVRA EKFDP+RGFK STY+AWWI+ AV
Sbjct:  157 QDELILCHEARSTMVEHNMRLVISIAKKYQNLGVSLQDLIQEGAMGLVRATEKFDPKRGFKFSTYAAWWIRHAV 230          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: B7FPT1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPT1_PHATC)

HSP 1 Score: 107 bits (266), Expect = 3.600e-26
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    2 ESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 76
            E +     AK+ M+++NMR+V+SIARKY N+GV L DL+QEGSLGL RA EKF+P++GFK STY++WWIQQAVF+
Sbjct:   63 EMVMTSREAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWWIQQAVFR 137          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A7S2AXT5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AXT5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.770e-26
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 0
Query:   10 AKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 76
            AK+ MI +NMR+VISIAR+YQ++GV L DLIQEGSLGL+RA EKFDP RGF+ STY++WWIQQAVF+
Sbjct:  261 AKDVMINSNMRLVISIARRYQHLGVSLQDLIQEGSLGLIRASEKFDPSRGFRFSTYASWWIQQAVFR 327          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.160e-25
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 0
Query:    9 SAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFKV 77
            SAK+AMI +N+R+VISIA++YQ  G+ L DLIQEGSLGLVRAVEKFDPE+GFK STYS WWI+QA+ + 
Sbjct:  231 SAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRA 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGM6_ECTSI3.030e-3880.49RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A6H5LBV0_9PHAE1.130e-3584.21RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A7S2Y444_9STRA7.700e-2870.15Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A835YXH6_9STRA2.060e-2766.20RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A1Z5JZN1_FISSO4.130e-2766.67Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A835ZEC7_9STRA3.310e-2664.71RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A7S2XUY2_9STRA3.410e-2666.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B7FPT1_PHATC3.600e-2662.67Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2AXT5_9STRA9.770e-2673.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WX55_9STRA1.160e-2571.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 38..51
score: 70.18
coord: 62..70
score: 63.58
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 38..51
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 10..74
e-value: 6.3E-15
score: 53.2
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 14..74
e-value: 4.3E-17
score: 61.6
NoneNo IPR availableGENE3D1.10.601.10coord: 1..77
e-value: 1.9E-35
score: 125.0
NoneNo IPR availablePANTHERPTHR30603:SF15RNA POLYMERASE SIGMA FACTOR RPOScoord: 5..74
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 5..74
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 3..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116417contigH-elongata_contig116417:1665..1910 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116417.1291.1mRNA_H-elongata_contig116417.1291.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig116417 1665..1910 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig116417.1291.1 ID=prot_H-elongata_contig116417.1291.1|Name=mRNA_H-elongata_contig116417.1291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
QESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRA
VEKFDPERGFKLSTYSAWWIQQAVFKVCGGGR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR014284RNA_pol_sigma-70_dom
IPR007627RNA_pol_sigma70_r2
IPR013325RNA_pol_sigma_r2