mRNA_H-elongata_contig54754.12867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54754.12867.1
Unique NamemRNA_H-elongata_contig54754.12867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 9.610e-51
Identity = 108/270 (40.00%), Postives = 151/270 (55.93%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEG-NRSQADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
            K +K+G++E +K RLVA+GF Q+  + Y  SSSP P+ ASIK++L++    G      D   A          Y  A   ++ G  + +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP A  G  L      + G E       P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct:   54 KTNKEGKVENFKARLVARGFSQIPNVDYFHSSSPGPSSASIKLMLAVADEKGINLNHWDVKQAQWG-------YHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIP-ATPGADLGPQREDEEGGEW------PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 308          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.240e-49
Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
            K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASIK++L++    G      D   AY  A ++EE++++              A R I   K+  R                  +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct:  791 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1085          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.320e-49
Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
            K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASIK++L++    G      D   AY  A ++EE++++              A R I   K+  R                  +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct: 1170 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1464          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.330e-49
Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
            K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASIK++L++    G      D   AY  A ++EE++++              A R I   K+  R                  +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct: 1190 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1484          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.340e-49
Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
            K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASIK++L++    G      D   AY  A ++EE++++              A R I   K+  R                  +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct: 1333 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1627          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 2.330e-49
Identity = 111/290 (38.28%), Postives = 159/290 (54.83%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEA-EVEEEIYVEASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
            K +K+G+I+ +  RLVA+GF Q+  + Y  SSSP P+ ASIK++L++    G      D   AY  A + EE+  V+A R I   K+  R                  +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P RE  G +MW +T +R D+SFA   +      P   HW A QK L YL  TRD+GITY+
Sbjct:  741 KTNKEGKIDTFNARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATQDEEQKIVKAERAIYGLKQSGRQFGYHAADTQVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1022          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A2N9FYA1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FYA1_FAGSY)

HSP 1 Score: 186 bits (471), Expect = 3.690e-49
Identity = 103/267 (38.58%), Postives = 153/267 (57.30%), Query Frame = 1
Query:   13 DGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAG-GKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYRG 810
            DG I+KYK RLVA+G+ Q +G+ YEE+ SP    ASI+++L+M+ +L  E  Q+D   A+L  E+++EI+++ S       + + D CV+ +   G   +++ +YVDD+L+A   K      +  L S F +KD+GEAS+ LG  I RDR    L   Q  YI+ V ERF +     I +  G G SLS     +T  E+E M ++PY    G LM+A   TR DI FA   ++ F  NPGP HW+A ++ L+YL    D  + Y+G
Sbjct:  514 DGSIDKYKARLVAKGYTQKEGVDYEETFSPVVRFASIRLILAMVASLDLELHQMDVKTAFLNGELDKEIFMDQSIGFVVKGQERKDHCVYVKRSEG-SFIILSLYVDDILLAENDKEFIKTIKEWLSSTFEMKDMGEASFVLGVKILRDRLKKLLGLSQETYIRKVLERFHMQDCKPIDTHVGKGDSLSSEMCPKTQVEIESMARVPYTNAIGSLMYAILCTRPDICFAVGLVSKFQSNPGPAHWKAVKRILRYLHGIEDYMLCYQG 779          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.980e-48
Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIY--------------VEASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
            K +K+G+I+K+K R+VA+GF QL  + Y  SSSP P+ ASI ++L++    G      D   A   A ++EE++              V+A R I   K+  R                  +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS IP+  G     K + ++ G       + P R+  G +MW +T +R D+SFAA  +A     P   HW A QK L YL  TRD+GITY+
Sbjct:  900 KTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1194          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.360e-48
Identity = 110/303 (36.30%), Postives = 162/303 (53.47%), Query Frame = 1
Query:    1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
            K +K+G+I+ +K RLVA+GF Q+  + Y  SSSP P+ ASIK++L++    G      D   AY  A ++EE++++              A R I   K+  R                  +ADPCVFR+++  +VV++I++YVDD+LVA + + D  +    L   FP K+L E  ++ GC I RD   GTL+  Q  YI ++ +RF V  TS IP++ G     K D ++ G       + P RE  G +MW +T +R D+SFA   +A     P   HW A QK L YL  TRD+GITY+
Sbjct:  345 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG-------EWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 639          
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6A4BM10_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BM10_9STRA)

HSP 1 Score: 173 bits (439), Expect = 3.720e-48
Identity = 95/282 (33.69%), Postives = 149/282 (52.84%), Query Frame = 1
Query:   16 GRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPCVFRRILHGI-------------VVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTS-IIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYRGEPG 819
            GR+ +YK RLVA+GF+Q  G+ + E+ SP     SI++VLS++ A  +   QLDAD A+L ++++E+++ E    I          C   + ++ +               V + +YVDD+++A+    + N+ +  L S F +K+LGE  +  G  I  DR AGTL   Q +YI  V  R        ++     G  L+K  S  T AE + M+  PYR + G L++  T TR D+ +   QL+ F +NPG  HW+AA + L+YL  T+D+GI Y    G
Sbjct:    5 GRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFTEVPYGITNAENMM---CKLDKAIYAVGPTSCVYVKGTKDAFVYVCLYVDDMIIAAKTTEEINEVKMALKSAFKMKELGETKFIFGMEIDHDRMAGTLMIKQTRYIDDVTNRVNQQDAKEVVNPCESGMKLTKMQSPTTNAERQAMKTKPYRSLIGCLLYITTCTRPDVVYIVTQLSRFLENPGQQHWKAAIRVLRYLKSTKDLGIIYNSNDG 283          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVD4_9PHAE9.610e-5140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE1.240e-4936.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.320e-4936.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.330e-4936.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.340e-4936.96Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JRE9_9PHAE2.330e-4938.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9FYA1_FAGSY3.690e-4938.58Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6H5JQW4_9PHAE1.980e-4836.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE2.360e-4836.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4BM10_9STRA3.720e-4833.69Uncharacterized protein (Fragment) n=2 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54754contigH-elongata_contig54754:2791..3811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue4.3e-31
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size949
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54754.12867.1prot_H-elongata_contig54754.12867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54754 2897..3685 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.3157172-UTR-H-elongata_contig54754:2790..28961622930892.3157172-UTR-H-elongata_contig54754:2790..2896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54754 2791..2896 -
1691679614.19981-UTR-H-elongata_contig54754:2790..28961691679614.19981-UTR-H-elongata_contig54754:2790..2896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54754 2791..2896 -
1622930892.3661983-UTR-H-elongata_contig54754:3685..38111622930892.3661983-UTR-H-elongata_contig54754:3685..3811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54754 3686..3811 -
1691679614.2273045-UTR-H-elongata_contig54754:3685..38111691679614.2273045-UTR-H-elongata_contig54754:3685..3811Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54754 3686..3811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930892.332401-CDS-H-elongata_contig54754:2896..34841622930892.332401-CDS-H-elongata_contig54754:2896..3484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54754 2897..3484 -
1691679614.2117236-CDS-H-elongata_contig54754:2896..34841691679614.2117236-CDS-H-elongata_contig54754:2896..3484Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54754 2897..3484 -
1622930892.3498464-CDS-H-elongata_contig54754:3556..36851622930892.3498464-CDS-H-elongata_contig54754:3556..3685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54754 3557..3685 -
1691679614.219503-CDS-H-elongata_contig54754:3556..36851691679614.219503-CDS-H-elongata_contig54754:3556..3685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54754 3557..3685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54754.12867.1

>prot_H-elongata_contig54754.12867.1 ID=prot_H-elongata_contig54754.12867.1|Name=mRNA_H-elongata_contig54754.12867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp
MVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPC
VFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEA
SYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLS
KSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDN
PGPTHWRAAQKALQYLWRTRDVGITYRGEPGGGGKLSA*
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mRNA from alignment at H-elongata_contig54754:2791..3811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54754.12867.1 ID=mRNA_H-elongata_contig54754.12867.1|Name=mRNA_H-elongata_contig54754.12867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-elongata_contig54754:2791..3811- (Himanthalia elongata Himel1 dioecious)
AAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGGC GCAGGGTTTCAGGCAGCTCAAAGGCATACACTACGAGGAATCCTCCTCTC CGACTCCTGCGCAGGCCAGCATTAAGATGGTACTCAGCATGATCACGGCT CTCGGTTGGGAGGCGCGGCAGCTGGACGCCGACATGGCCTACCTGGAGGC CGAAGTGGAGGAGGAGATCTACGTTGAAGCAAGTCGGCCTATTAAAGAAG GCAATGTACGGACTCGTCAACGCCGGGCTGCTGTGGTAAAAAAGTTCGGG ATTGAGCTCGAGGCAAAGGGTTTTCAGAGATCTCAAGCCGACCCATGCGT GTTCCGGCGGATTCTCCATGGGATAGTGGTAGTCGTCATCATGGTCTACG TCGACGACCTGCTGGTTGCTAGTGCGGCGAAACGTGACGAAAATCAAGCG GAGAGGGACCTGTGCTCATGTTTCCCCATCAAGGACCTAGGGGAGGCTTC GTATTACCTAGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTGA AGTGCGACCAGCATCAGTACATACAGACTGTGGCGGAACGTTTTGGCGTG ACGAAGACCAGCATCATCCCGTCTGCGGCAGGAGGAAAATCCCTTTCGAA ATCAGACAGCCAGCAAACGGGCGCAGAGGTTGAAGAAATGCGCCAGATTC CCTACCGAGAAATCTTTGGGGTCCTGATGTGGGCAGCGACGATGACCAGG GCCGACATTTCATTCGCTGCGCACCAACTGGCGAACTTTAACGACAACCC GGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGC GCACTCGGGACGTCGGGATCACCTACAGAGGGGAACCGGGGGGGGGGGGC AAGTTATCAGCGTGAATCAGTGTCGGGAGGGGCGGTGATGATGGCTGGCG GGGCCATTAGTTGGTTCTCGCGAGTGCAAAAGGTAACGACGGTGGTGTCG TCCGAACCAGAATACGTCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig54754:2791..3811-

>mRNA_H-elongata_contig54754.12867.1 ID=mRNA_H-elongata_contig54754.12867.1|Name=mRNA_H-elongata_contig54754.12867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1434bp|location=Sequence derived from alignment at H-elongata_contig54754:2791..3811- (Himanthalia elongata Himel1 dioecious)
ATGGTACTCAGCATGATCACGGCTCTCGGTTGGGAGGCGCGGCAGCTGGA
CGCCGACATGGCCTACCTGGAGGCCGAAGTGGAGGAGGAGATCTACGTTG
AAGCAAGTCGGCCTATTAAAGAAGGCAATATGGTACTCAGCATGATCACG
GCTCTCGGTTGGGAGGCGCGGCAGCTGGACGCCGACATGGCCTACCTGGA
GGCCGAAGTGGAGGAGGAGATCTACGTTGAAGCAAGTCGGCCTATTAAAG
AAGGCAATAGATCTCAAGCCGACCCATGCGTGTTCCGGCGGATTCTCCAT
GGGATAGTGGTAGTCGTCATCATGGTCTACGTCGACGACCTGCTGGTTGC
TAGTGCGGCGAAACGTGACGAAAATCAAGCGGAGAGGGACCTGTGCTCAT
GTTTCCCCATCAAGGACCTAGGGGAGGCTTCGTATTACCTAGGATGCCAC
ATCACGCGGGACCGGAACGCCGGGACACTGAAGTGCGACCAGCATCAGTA
CATACAGACTGTGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCC
CGTCTGCGGCAGGAGGAAAATCCCTTTCGAAATCAGACAGCCAGCAAACG
GGCGCAGAGGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAATCTTTGG
GGTCCTGATGTGGGCAGCGACGATGACCAGGGCCGACATTTCATTCGCTG
CGCACCAACTGGCGAACTTTAACGACAACCCGGGACCGACACACTGGAGG
GCAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTCGGGACGTCGGGAT
CACCTACAGAGGGGAACCGGGGGGGGGGGGCAAGTTATCAGCGTGAAGAT
CTCAAGCCGACCCATGCGTGTTCCGGCGGATTCTCCATGGGATAGTGGTA
GTCGTCATCATGGTCTACGTCGACGACCTGCTGGTTGCTAGTGCGGCGAA
ACGTGACGAAAATCAAGCGGAGAGGGACCTGTGCTCATGTTTCCCCATCA
AGGACCTAGGGGAGGCTTCGTATTACCTAGGATGCCACATCACGCGGGAC
CGGAACGCCGGGACACTGAAGTGCGACCAGCATCAGTACATACAGACTGT
GGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCTGCGGCAG
GAGGAAAATCCCTTTCGAAATCAGACAGCCAGCAAACGGGCGCAGAGGTT
GAAGAAATGCGCCAGATTCCCTACCGAGAAATCTTTGGGGTCCTGATGTG
GGCAGCGACGATGACCAGGGCCGACATTTCATTCGCTGCGCACCAACTGG
CGAACTTTAACGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGAAA
GCGCTGCAATATTTATGGCGCACTCGGGACGTCGGGATCACCTACAGAGG
GGAACCGGGGGGGGGGGGCAAGTTATCAGCGTGA
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