mRNA_H-elongata_contig54754.12867.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 183 bits (464), Expect = 9.610e-51 Identity = 108/270 (40.00%), Postives = 151/270 (55.93%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEG-NRSQADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
K +K+G++E +K RLVA+GF Q+ + Y SSSP P+ ASIK++L++ G D A Y A ++ G + +ADPCVFR+++ +VV++I++YVDD+LVA + + D + L FP K+LGE ++ GC I RD AGTL+ Q YI ++ ERF V TS IP A G L + G E P RE G +MW +T +R D+SFA +A P HW A QK L YL TRD+GITY+
Sbjct: 54 KTNKEGKVENFKARLVARGFSQIPNVDYFHSSSPGPSSASIKLMLAVADEKGINLNHWDVKQAQWG-------YHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIP-ATPGADLGPQREDEEGGEW------PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 308
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 187 bits (475), Expect = 1.240e-49 Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
K +K+G+I+ +K RLVA+GF Q+ + Y SSSP P+ ASIK++L++ G D AY A ++EE++++ A R I K+ R +ADPCVFR+++ +VV++I++YVDD+LVA + + D + L FP K+LGE ++ GC I RD AGTL+ Q YI ++ ERF V TS IP+ G K + ++ G + P RE G +MW +T +R D+SFA +A P HW A QK L YL TRD+GITY+
Sbjct: 791 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1085
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 187 bits (475), Expect = 1.320e-49 Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
K +K+G+I+ +K RLVA+GF Q+ + Y SSSP P+ ASIK++L++ G D AY A ++EE++++ A R I K+ R +ADPCVFR+++ +VV++I++YVDD+LVA + + D + L FP K+LGE ++ GC I RD AGTL+ Q YI ++ ERF V TS IP+ G K + ++ G + P RE G +MW +T +R D+SFA +A P HW A QK L YL TRD+GITY+
Sbjct: 1170 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1464
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 187 bits (475), Expect = 1.330e-49 Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
K +K+G+I+ +K RLVA+GF Q+ + Y SSSP P+ ASIK++L++ G D AY A ++EE++++ A R I K+ R +ADPCVFR+++ +VV++I++YVDD+LVA + + D + L FP K+LGE ++ GC I RD AGTL+ Q YI ++ ERF V TS IP+ G K + ++ G + P RE G +MW +T +R D+SFA +A P HW A QK L YL TRD+GITY+
Sbjct: 1190 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1484
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 187 bits (475), Expect = 1.340e-49 Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
K +K+G+I+ +K RLVA+GF Q+ + Y SSSP P+ ASIK++L++ G D AY A ++EE++++ A R I K+ R +ADPCVFR+++ +VV++I++YVDD+LVA + + D + L FP K+LGE ++ GC I RD AGTL+ Q YI ++ ERF V TS IP+ G K + ++ G + P RE G +MW +T +R D+SFA +A P HW A QK L YL TRD+GITY+
Sbjct: 1333 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1627
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE) HSP 1 Score: 186 bits (473), Expect = 2.330e-49 Identity = 111/290 (38.28%), Postives = 159/290 (54.83%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEA-EVEEEIYVEASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
K +K+G+I+ + RLVA+GF Q+ + Y SSSP P+ ASIK++L++ G D AY A + EE+ V+A R I K+ R +ADPCVFR+++ +VV++I++YVDD+LVA + + D + L FP K+LGE ++ GC I RD AGTL+ Q YI ++ ERF V TS IP+ G K + ++ G + P RE G +MW +T +R D+SFA + P HW A QK L YL TRD+GITY+
Sbjct: 741 KTNKEGKIDTFNARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATQDEEQKIVKAERAIYGLKQSGRQFGYHAADTQVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1022
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A2N9FYA1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FYA1_FAGSY) HSP 1 Score: 186 bits (471), Expect = 3.690e-49 Identity = 103/267 (38.58%), Postives = 153/267 (57.30%), Query Frame = 1
Query: 13 DGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAG-GKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYRG 810
DG I+KYK RLVA+G+ Q +G+ YEE+ SP ASI+++L+M+ +L E Q+D A+L E+++EI+++ S + + D CV+ + G +++ +YVDD+L+A K + L S F +KD+GEAS+ LG I RDR L Q YI+ V ERF + I + G G SLS +T E+E M ++PY G LM+A TR DI FA ++ F NPGP HW+A ++ L+YL D + Y+G
Sbjct: 514 DGSIDKYKARLVAKGYTQKEGVDYEETFSPVVRFASIRLILAMVASLDLELHQMDVKTAFLNGELDKEIFMDQSIGFVVKGQERKDHCVYVKRSEG-SFIILSLYVDDILLAENDKEFIKTIKEWLSSTFEMKDMGEASFVLGVKILRDRLKKLLGLSQETYIRKVLERFHMQDCKPIDTHVGKGDSLSSEMCPKTQVEIESMARVPYTNAIGSLMYAILCTRPDICFAVGLVSKFQSNPGPAHWKAVKRILRYLHGIEDYMLCYQG 779
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 184 bits (466), Expect = 1.980e-48 Identity = 112/303 (36.96%), Postives = 163/303 (53.80%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIY--------------VEASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
K +K+G+I+K+K R+VA+GF QL + Y SSSP P+ ASI ++L++ G D A A ++EE++ V+A R I K+ R +ADPCVFR+++ +VV++I++YVDD+LVA + + D + L FP K+LGE ++ GC I RD AGTL+ Q YI ++ ERF V TS IP+ G K + ++ G + P R+ G +MW +T +R D+SFAA +A P HW A QK L YL TRD+GITY+
Sbjct: 900 KTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG-------EWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 1194
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 182 bits (462), Expect = 2.360e-48 Identity = 110/303 (36.30%), Postives = 162/303 (53.47%), Query Frame = 1
Query: 1 KIDKDGRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVE--------------ASRPI---KEGNRS-----------------QADPCVFRRILHGIVVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTSIIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYR 807
K +K+G+I+ +K RLVA+GF Q+ + Y SSSP P+ ASIK++L++ G D AY A ++EE++++ A R I K+ R +ADPCVFR+++ +VV++I++YVDD+LVA + + D + L FP K+L E ++ GC I RD GTL+ Q YI ++ +RF V TS IP++ G K D ++ G + P RE G +MW +T +R D+SFA +A P HW A QK L YL TRD+GITY+
Sbjct: 345 KTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGG-------EWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ 639
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Match: A0A6A4BM10_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BM10_9STRA) HSP 1 Score: 173 bits (439), Expect = 3.720e-48 Identity = 95/282 (33.69%), Postives = 149/282 (52.84%), Query Frame = 1
Query: 16 GRIEKYKCRLVAQGFRQLKGIHYEESSSPTPAQASIKMVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPCVFRRILHGI-------------VVVVIMVYVDDLLVASAAKRDENQAERDLCSCFPIKDLGEASYYLGCHITRDRNAGTLKCDQHQYIQTVAERFGVTKTS-IIPSAAGGKSLSKSDSQQTGAEVEEMRQIPYREIFGVLMWAATMTRADISFAAHQLANFNDNPGPTHWRAAQKALQYLWRTRDVGITYRGEPG 819
GR+ +YK RLVA+GF+Q G+ + E+ SP SI++VLS++ A + QLDAD A+L ++++E+++ E I C + ++ + V + +YVDD+++A+ + N+ + L S F +K+LGE + G I DR AGTL Q +YI V R ++ G L+K S T AE + M+ PYR + G L++ T TR D+ + QL+ F +NPG HW+AA + L+YL T+D+GI Y G
Sbjct: 5 GRVVRYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKAYVTEQLDADTAFLNSDLKEQVFTEVPYGITNAENMM---CKLDKAIYAVGPTSCVYVKGTKDAFVYVCLYVDDMIIAAKTTEEINEVKMALKSAFKMKELGETKFIFGMEIDHDRMAGTLMIKQTRYIDDVTNRVNQQDAKEVVNPCESGMKLTKMQSPTTNAERQAMKTKPYRSLIGCLLYITTCTRPDVVYIVTQLSRFLENPGQQHWKAAIRVLRYLKSTKDLGIIYNSNDG 283 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54754.12867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54754.12867.1 >prot_H-elongata_contig54754.12867.1 ID=prot_H-elongata_contig54754.12867.1|Name=mRNA_H-elongata_contig54754.12867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp MVLSMITALGWEARQLDADMAYLEAEVEEEIYVEASRPIKEGNRSQADPCback to top mRNA from alignment at H-elongata_contig54754:2791..3811- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54754.12867.1 ID=mRNA_H-elongata_contig54754.12867.1|Name=mRNA_H-elongata_contig54754.12867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1021bp|location=Sequence derived from alignment at H-elongata_contig54754:2791..3811- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54754:2791..3811- >mRNA_H-elongata_contig54754.12867.1 ID=mRNA_H-elongata_contig54754.12867.1|Name=mRNA_H-elongata_contig54754.12867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1434bp|location=Sequence derived from alignment at H-elongata_contig54754:2791..3811- (Himanthalia elongata Himel1 dioecious)back to top |