mRNA_H-elongata_contig11633.1285.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11633.1285.1
Unique NamemRNA_H-elongata_contig11633.1285.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: D8LL03_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL03_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 4.500e-108
Identity = 166/193 (86.01%), Postives = 177/193 (91.71%), Query Frame = 1
Query:    7 AYPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYGRGYSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMSGNEE 585
            AYPALVVSLGSGVSIIKVDGPA+FKRVSGSSIGGGTYWGLCRLLT A+SYD+SL MAR+G SDK DMLVGDIYGRGYSKFQLSS TLASSFGK+GGM +P    SGV+E+DL +SLLVMITMNIGQVAYLNA+L  TRRIYFVGNFLR N +SGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMSG EE
Sbjct:  334 AYPALVVSLGSGVSIIKVDGPAKFKRVSGSSIGGGTYWGLCRLLTEATSYDESLDMARQGNSDKVDMLVGDIYGRGYSKFQLSSNTLASSFGKVGGMEAPGKPGSGVSEEDLVQSLLVMITMNIGQVAYLNAKLHNTRRIYFVGNFLRHNRLSGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMSGTEE 526          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: A0A835Z2M7_9STRA (Fumble-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2M7_9STRA)

HSP 1 Score: 286 bits (732), Expect = 5.990e-92
Identity = 142/194 (73.20%), Postives = 168/194 (86.60%), Query Frame = 1
Query:    4 EAYPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYGRGYSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMSGNEE 585
            ++YPALVVS+GSGVSI+KVDGPA+F+RVSGSSIGGGTYWGLCRLLTGA+ YD SL +A +GESD+ DMLVGDIYG GY+KFQLSS TLASSFGK+     P+    GVT +D++K+L+VM+TMNIGQVAYLNA+L+ TRRIYFVGNFLR N+IS Q+LA+AI YWS GEMEALF EHEGY GALG+FL SG E+
Sbjct:  304 QSYPALVVSIGSGVSILKVDGPAKFERVSGSSIGGGTYWGLCRLLTGATDYDDSLDLADQGESDRVDMLVGDIYGHGYNKFQLSSNTLASSFGKLVTKEDPRE---GVTNEDVSKALIVMVTMNIGQVAYLNAKLYDTRRIYFVGNFLRHNNISAQRLAYAIAYWSGGEMEALFFEHEGYLGALGAFLSSGYED 494          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: A0A7S1ZWH9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWH9_TRICV)

HSP 1 Score: 228 bits (582), Expect = 2.050e-73
Identity = 114/190 (60.00%), Postives = 148/190 (77.89%), Query Frame = 1
Query:    1 SEAYPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYGR---GYSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGS 561
            +EAYP L+V +G+GVSI++VDGP + +R+SGS+IGGGTYWGLCRLLT A S+D +L +A RG+  K DM+VGDIYG       K  L S  +ASSFGK+     P   ++G+ ++DL ++LL+M+T NIGQVAYLNARL+ T+RIYFVGNFLR+N +S ++LA+AI YWS GE EALFLEHEGY GALG+
Sbjct:    3 AEAYPHLLVMIGTGVSILRVDGPRRHERISGSTIGGGTYWGLCRLLTDAESFDHALRLAERGDPSKVDMMVGDIYGEDSDALEKLGLPSNVVASSFGKLVAKVDP---AAGLRQEDLARALLIMVTNNIGQVAYLNARLYGTKRIYFVGNFLRRNAVSQRRLAYAIHYWSGGENEALFLEHEGYFGALGA 189          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: B5YN27_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YN27_THAPS)

HSP 1 Score: 230 bits (586), Expect = 1.930e-72
Identity = 118/193 (61.14%), Postives = 150/193 (77.72%), Query Frame = 1
Query:    1 SEAYPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYGR---GYSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLM 570
            S A+P L+VS+G+GVSI++VDGP Q +RVSGS+IGGGTYWGLCRLLTG+ S+   L++A +G+  K DM+VGDIYG+      K  L S  +ASSFGK+    +P   S G+ E+DL ++LL+M+T NIGQVA+LNA+L +T RIYFVG FL+ N IS Q+LA AIDYWS+G MEALFLEHEGY GALGSFL+
Sbjct:  108 SNAFPYLLVSIGTGVSILRVDGPRQHERVSGSTIGGGTYWGLCRLLTGSDSFSDVLNLAMKGDPSKVDMMVGDIYGKDSNALEKIGLPSDVVASSFGKLVAKQNP---SEGIKEEDLARALLLMVTNNIGQVAHLNAQLHETSRIYFVGTFLQHNTISQQRLAHAIDYWSNGNMEALFLEHEGYFGALGSFLL 297          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: W7TXJ8_9STRA (Type II pantothenate kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXJ8_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.870e-71
Identity = 119/192 (61.98%), Postives = 149/192 (77.60%), Query Frame = 1
Query:   10 YPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYGRGYSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMSGNEE 585
            YP LVV++GSGVSI+KV+GP +++R+SGSS+GGGTYWGLCRLLTG  S+D+ L +A  G++   DM VGDIYGRGY KF LSS  +ASSFGK+     P      + E+D+ ++LL+MIT NIGQVAYLNA + +   IYFVGNFLR N IS ++LA+AIDYWS+G+MEALFLEHEGY GALG+FL S   E
Sbjct:  416 YPYLVVNIGSGVSILKVEGPGRYERISGSSLGGGTYWGLCRLLTGCKSFDEVLDLAEMGDATMVDMTVGDIYGRGYDKFHLSSSVIASSFGKLATCHDP---GEVIREEDMARALLMMITGNIGQVAYLNAVIHRATHIYFVGNFLRHNKISCRRLAYAIDYWSAGKMEALFLEHEGYFGALGAFLNSSYVE 604          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: A0A7S2XPQ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPQ7_9STRA)

HSP 1 Score: 228 bits (580), Expect = 2.600e-71
Identity = 115/191 (60.21%), Postives = 148/191 (77.49%), Query Frame = 1
Query:   10 YPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYGRG---YSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMS 573
            YP L+V++G+GVSI++VDGP + +R+SGS+IGGGTYWGLCRLLT    ++  L++A RG+  K DM+VGDIYG       K  L S  +ASSFGK+     P   +SG+ ++DL ++LL+M+T+NIGQV+YLNA+L KT RIYFVGNFLR N IS Q+LAFAIDYWS G+MEALFLEHEG  GALG+FL+S
Sbjct:   91 YPYLLVTIGTGVSILRVDGPRKHERISGSTIGGGTYWGLCRLLTDVEDFEDVLNLAERGDPSKVDMMVGDIYGENSDALEKLGLPSHIVASSFGKLVAKQDP---ASGIKQEDLARALLLMVTINIGQVSYLNAQLHKTPRIYFVGNFLRHNSISQQRLAFAIDYWSKGKMEALFLEHEGNFGALGAFLLS 278          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: A0A7S0FNR1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FNR1_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.910e-70
Identity = 112/184 (60.87%), Postives = 146/184 (79.35%), Query Frame = 1
Query:   31 LGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYGRG---YSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMS 573
            +G+GVSI++VDGP Q +R+SGS+IGGGTYWGLCRLLT + S++  + +A +G+  K DM+VGDIYG+G     K  LS+  +ASSFGK+    +P   + G+ ++DL ++LL+MIT NIGQVAYLNA+L KT+RIYFVGNFLR N IS Q+LAFAID+WS G+ EALFLEHEGY GALG+FL+S
Sbjct:    1 IGTGVSILRVDGPRQHERISGSTIGGGTYWGLCRLLTNSESFEDVIDLAEKGDPSKVDMMVGDIYGKGSDALEKLGLSANLVASSFGKLVAKQNP---AEGLEQEDLARALLLMITNNIGQVAYLNAQLHKTKRIYFVGNFLRHNVISQQRLAFAIDFWSGGKNEALFLEHEGYFGALGAFLLS 181          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: A0A1E7FXN7_9STRA (Fumble n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXN7_9STRA)

HSP 1 Score: 226 bits (576), Expect = 5.270e-70
Identity = 115/198 (58.08%), Postives = 151/198 (76.26%), Query Frame = 1
Query:    1 SEAYPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYG---RGYSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMSGNEE 585
            S AYP ++V++G+GVS+++VDGP Q +RVSGS+IGGGT+WGL RLLT   S+  S+ +A +G+  K DM+VGDIYG       K  L++  +ASSFGK+     P   S G+T++DL ++LL ++T NIGQVAYLNA+L  T RIYFVG+FLR+N IS ++L++AIDYWS GEMEALFLEHEGY GALG+FLMS N E
Sbjct:  169 SSAYPYMLVTIGTGVSVLRVDGPRQHERVSGSTIGGGTFWGLMRLLTDVESFHDSMKLAEKGDLSKVDMMVGDIYGDNSEALEKLGLAANIVASSFGKLVSKDDP---SKGLTQEDLARALLSLVTNNIGQVAYLNAKLHNTPRIYFVGSFLRENMISQRRLSYAIDYWSKGEMEALFLEHEGYFGALGAFLMSQNIE 363          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: A0A7S0GF81_9STRA (Hypothetical protein n=4 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GF81_9STRA)

HSP 1 Score: 226 bits (576), Expect = 6.230e-70
Identity = 115/194 (59.28%), Postives = 147/194 (75.77%), Query Frame = 1
Query:    1 SEAYPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYG---RGYSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMS 573
            S  YP L+V++G+GVSI++VDGP Q++R+SGSSIGGGTYWGLCRLLT    ++  L +A RG   K DM+VGDIYG      SK  L S  +ASSFGK+     P   +SG+ ++DL ++LL+MIT NIGQVAYLNA+L  T RIYFVGNFLR N +S ++L+++I YWS GEMEALFLEHEGY GALG+FL++
Sbjct:  152 SSTYPYLLVTIGTGVSILRVDGPRQYERISGSSIGGGTYWGLCRLLTDVEKFEDVLDLASRGNPTKCDMMVGDIYGDNPEALSKLGLPSNIVASSFGKLVAKQDP---ASGLKQEDLARALLLMITNNIGQVAYLNAQLHNTSRIYFVGNFLRHNKMSQRRLSYSIHYWSKGEMEALFLEHEGYFGALGAFLLN 342          
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Match: A0A7S2CGZ6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CGZ6_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.010e-69
Identity = 115/191 (60.21%), Postives = 149/191 (78.01%), Query Frame = 1
Query:    7 AYPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGASSYDQSLHMARRGESDKADMLVGDIYGRGYSKFQLSSKTLASSFGKIGGMTSPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLRQNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMSGN 579
            ++P L+VS+GSGVSII+VD P  ++RVSGSSIGGGT++GL RLLTG SSY+++L +A +G++ K DM+VGDIYGR Y K  LSS  +ASSFGK+     P+ +S     +DL +SLL+M T NIGQVA LNA+  K  RIYF+GNFLR N IS ++L++AIDYWS G MEALFLEHEGY GALG+F++S +
Sbjct:  154 SFPYLLVSIGSGVSIIRVDAPGVYQRVSGSSIGGGTFFGLARLLTGCSSYEEALALAEKGDATKCDMMVGDIYGRNYGKIGLSSDIVASSFGKLMSEKDPQGTS---RPEDLVRSLLLMTTNNIGQVALLNAQKEKCARIYFIGNFLRSNEISCRRLSYAIDYWSDGVMEALFLEHEGYFGALGAFMLSAH 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11633.1285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL03_ECTSI4.500e-10886.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z2M7_9STRA5.990e-9273.20Fumble-domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S1ZWH9_TRICV2.050e-7360.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B5YN27_THAPS1.930e-7261.14Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
W7TXJ8_9STRA1.870e-7161.98Type II pantothenate kinase n=2 Tax=Monodopsidacea... [more]
A0A7S2XPQ7_9STRA2.600e-7160.21Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0FNR1_9STRA1.910e-7060.87Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1E7FXN7_9STRA5.270e-7058.08Fumble n=1 Tax=Fragilariopsis cylindrus CCMP1102 T... [more]
A0A7S0GF81_9STRA6.230e-7059.28Hypothetical protein n=4 Tax=Proboscia inermis Tax... [more]
A0A7S2CGZ6_9STRA1.010e-6960.21Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11633contigH-elongata_contig11633:4892..6903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.6
Seed ortholog evalue2e-87
Seed eggNOG ortholog2880.D8LL03
Preferred namePANK1
KEGG rclassRC00002,RC00017
KEGG koko:K09680,ko:K12648,ko:K19942
KEGG ReactionR02971,R03018,R04391
KEGG Pathwayko00770,ko01100,ko04621,ko04622,ko04623,ko05160,ko05161,ko05162,ko05164,ko05168,map00770,map01100,map04621,map04622,map04623,map05160,map05161,map05162,map05164,map05168
KEGG ModuleM00120
GOsGO:0000003,GO:0000278,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004594,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005768,GO:0005819,GO:0005829,GO:0005856,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007049,GO:0007059,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009314,GO:0009628,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010212,GO:0010332,GO:0010564,GO:0010565,GO:0012505,GO:0015630,GO:0015936,GO:0015937,GO:0015939,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019216,GO:0019217,GO:0019218,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0022412,GO:0022414,GO:0030117,GO:0030118,GO:0030154,GO:0031323,GO:0031410,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031982,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040011,GO:0042592,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045475,GO:0046390,GO:0046483,GO:0048232,GO:0048468,GO:0048475,GO:0048477,GO:0048511,GO:0048512,GO:0048513,GO:0048563,GO:0048569,GO:0048609,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051302,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0055037,GO:0055086,GO:0055088,GO:0055090,GO:0060429,GO:0060562,GO:0061024,GO:0062012,GO:0065007,GO:0065008,GO:0070013,GO:0070328,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0080090,GO:0090207,GO:0090407,GO:0097708,GO:0098796,GO:0104004,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1904251
EggNOG free text desc.pantothenate kinase activity
EggNOG OGsCOG5146@1,KOG2201@2759
EC2.7.1.33
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionType II pantothenate kinase
Ec32 orthologEc-11_006230.1
Exons3
Model size585
Cds size585
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11633.1285.1prot_H-elongata_contig11633.1285.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11633 4892..6903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.0048106-CDS-H-elongata_contig11633:4891..49481622929676.0048106-CDS-H-elongata_contig11633:4891..4948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11633 4892..4948 +
1691679115.4481008-CDS-H-elongata_contig11633:4891..49481691679115.4481008-CDS-H-elongata_contig11633:4891..4948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11633 4892..4948 +
1622929676.019159-CDS-H-elongata_contig11633:5877..62041622929676.019159-CDS-H-elongata_contig11633:5877..6204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11633 5878..6204 +
1691679115.458833-CDS-H-elongata_contig11633:5877..62041691679115.458833-CDS-H-elongata_contig11633:5877..6204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11633 5878..6204 +
1622929676.0369458-CDS-H-elongata_contig11633:6702..69031622929676.0369458-CDS-H-elongata_contig11633:6702..6903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11633 6703..6903 +
1691679115.4670434-CDS-H-elongata_contig11633:6702..69031691679115.4670434-CDS-H-elongata_contig11633:6702..6903Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11633 6703..6903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11633.1285.1

>prot_H-elongata_contig11633.1285.1 ID=prot_H-elongata_contig11633.1285.1|Name=mRNA_H-elongata_contig11633.1285.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp
SEAYPALVVSLGSGVSIIKVDGPAQFKRVSGSSIGGGTYWGLCRLLTGAS
SYDQSLHMARRGESDKADMLVGDIYGRGYSKFQLSSKTLASSFGKIGGMT
SPKSSSSGVTEDDLTKSLLVMITMNIGQVAYLNARLFKTRRIYFVGNFLR
QNHISGQQLAFAIDYWSSGEMEALFLEHEGYCGALGSFLMSGNEE
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mRNA from alignment at H-elongata_contig11633:4892..6903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11633.1285.1 ID=mRNA_H-elongata_contig11633.1285.1|Name=mRNA_H-elongata_contig11633.1285.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2012bp|location=Sequence derived from alignment at H-elongata_contig11633:4892..6903+ (Himanthalia elongata Himel1 dioecious)
TCCGAGGCTTATCCAGCCTTAGTAGTCTCGTTGGGATCCGGTGTCAGCAT CATCAAGGTAAGAAGTGCATCCCAACGATAGCGGTGAGAGGGGGGGGTGC TTAAGCGTCCCCTGTTCTGAGGTTGAGTGTCAATGTCCGTCCCCTCCCGG GGATCCCTGGACGTAGAGTAAGGGGATAAGTAAGTTATGTCCCCGGTATG GGATGAGTTTAAACCTCCCTGAATCGGGACGCTTAAGCAATTGAGGCTAA GTTGAAGTTTAATTTAAGCGATATTGACAAGGGTACTAAATGCATTGGAA GGCTCTAACCTCGACGCCCTAGGCATGAATATTTTTCACAGCAGTAGCAG TAGATAAAAGACAAGATCAAACCTTTGCGAGGCGGCGGACTAGGGATCAC GAGCCAAAGCCTAGATCGTACTGTAATATGAACGTTGGTGCTGCGCTACA GGTTGTTCTTGGACAGATGGTACTATTAATAAGGACTATTACTATTAATA AGGACTATTACTATTAAGAAAGAGGTGTTGGGTGATCTTGTAGCAGCTGT AATCCTGACGACGATCACTCCAATCACTATTTGGGCAGCGCTGTTTGCAG TAGACTGGCCAGGGACCGACCGACCGACCCCTTGTTTCGACATTCTAATA CTGTATCTAATACTGAATATAAATATCCTTGTTAGCCTATTAATAGTGAT CTACTGTATATAACAGTCCTATACTGGCTGGGGGTTTTGTGTGAGCTCTA TTGATTTTCGATTTTGATTATTTATTCTCGATTATGACTATTGATTATCG ATCATGACTAATAATTCTCCCTTCACAAGTGCTTTTTTTTTTACAATTCG CCAGTTTTTAGTGTTTTTCTGATTCCCGTGTTCAATTCAGCGTACCATAA GCGTGATTGGGAAGAGACACAATCGGCATAGGTTATAATGTGACAATACT AAACTCCACTCTTAACATCTAACATGTGACGTGTAGGTAGATGGACCGGC GCAGTTCAAGCGAGTTAGCGGGAGCAGTATTGGAGGGGGTACCTACTGGG GGCTGTGTCGTCTCCTTACCGGTGCATCGAGCTATGACCAGTCGCTGCAC ATGGCGAGGCGGGGGGAATCCGATAAGGCCGACATGCTCGTGGGGGACAT CTACGGTAGAGGGTACAGCAAGTTTCAGCTTAGCTCCAAGACGTTGGCTA GTTCCTTCGGAAAGATCGGGGGAATGACGTCACCCAAAAGCTCTAGTTCT GGGGTGACCGAGGACGACCTCACCAAGTCCCTGTTAGTGATGATCACGAT GAACATCGGGCAGGTGAGAGTTTCTTTGTATGTAGAGATATATCAAGATA TATGGGGCTGGGTCGAGAGTGTCTTATGTATAGAGGTACAGAGGGTTCAC GGTATTAGGGTTAGGGCTAGAGGAACCATGGGTGACAGGACAGGACATGA TCGAGCTTCGCCAATAGCACGGGACTACATGTCTCTCTGCTATTTATAGT ATCTTAATCACAAGTCAAGTATAGTCTAGTATATTAAGGTCTAGAGAATT TACCACAGTACTATAATAGAAGTTGATAAATACTTCGTACAGTATATCAG TGTGTGTTGCCTGCATGTGCTCAGATACTGGTTCATTTTTTATACATACA TCATTGAGTAATATTGTACATACAACATTAGACTAATAGACTAATATAGC TCGAGGTTAATAAAAAAACTACTGCGCACATATGTACCGTACAGCCTATG ATCTAGTAATAGTCTAAATATACCTCCTCCCCCCCAATATGGATCCATCC TCCCTCAAAAGGTGGCATACCTCAACGCCCGACTCTTCAAAACGCGGCGA ATCTACTTCGTCGGCAACTTCCTTCGGCAAAACCACATCTCCGGGCAGCA GCTAGCCTTCGCAATCGACTACTGGAGCAGCGGGGAGATGGAGGCTCTTT TCCTCGAACACGAAGGGTACTGCGGTGCACTAGGCTCGTTTCTAATGTCG GGGAATGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig11633:4892..6903+

>mRNA_H-elongata_contig11633.1285.1 ID=mRNA_H-elongata_contig11633.1285.1|Name=mRNA_H-elongata_contig11633.1285.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig11633:4892..6903+ (Himanthalia elongata Himel1 dioecious)
TCCGAGGCTTATCCAGCCTTAGTAGTCTCGTTGGGATCCGGTGTCAGCAT
CATCAAGTCCGAGGCTTATCCAGCCTTAGTAGTCTCGTTGGGATCCGGTG
TCAGCATCATCAAGGTAGATGGACCGGCGCAGTTCAAGCGAGTTAGCGGG
AGCAGTATTGGAGGGGGTACCTACTGGGGGCTGTGTCGTCTCCTTACCGG
TGCATCGAGCTATGACCAGTCGCTGCACATGGCGAGGCGGGGGGAATCCG
ATAAGGCCGACATGCTCGTGGGGGACATCTACGGTAGAGGGTACAGCAAG
TTTCAGCTTAGCTCCAAGACGTTGGCTAGTTCCTTCGGAAAGATCGGGGG
AATGACGTCACCCAAAAGCTCTAGTTCTGGGGTGACCGAGGACGACCTCA
CCAAGTCCCTGTTAGTGATGATCACGATGAACATCGGGCAGGTAGATGGA
CCGGCGCAGTTCAAGCGAGTTAGCGGGAGCAGTATTGGAGGGGGTACCTA
CTGGGGGCTGTGTCGTCTCCTTACCGGTGCATCGAGCTATGACCAGTCGC
TGCACATGGCGAGGCGGGGGGAATCCGATAAGGCCGACATGCTCGTGGGG
GACATCTACGGTAGAGGGTACAGCAAGTTTCAGCTTAGCTCCAAGACGTT
GGCTAGTTCCTTCGGAAAGATCGGGGGAATGACGTCACCCAAAAGCTCTA
GTTCTGGGGTGACCGAGGACGACCTCACCAAGTCCCTGTTAGTGATGATC
ACGATGAACATCGGGCAGGTGGCATACCTCAACGCCCGACTCTTCAAAAC
GCGGCGAATCTACTTCGTCGGCAACTTCCTTCGGCAAAACCACATCTCCG
GGCAGCAGCTAGCCTTCGCAATCGACTACTGGAGCAGCGGGGAGATGGAG
GCTCTTTTCCTCGAACACGAAGGGTACTGCGGTGCACTAGGCTCGTTTCT
AATGTCGGGGAATGAGGAGGTGGCATACCTCAACGCCCGACTCTTCAAAA
CGCGGCGAATCTACTTCGTCGGCAACTTCCTTCGGCAAAACCACATCTCC
GGGCAGCAGCTAGCCTTCGCAATCGACTACTGGAGCAGCGGGGAGATGGA
GGCTCTTTTCCTCGAACACGAAGGGTACTGCGGTGCACTAGGCTCGTTTC
TAATGTCGGGGAATGAGGAG
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