prot_H-elongata_contig54600.12846.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54600.12846.1
Unique Nameprot_H-elongata_contig54600.12846.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length175
Homology
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A6H5KVJ9_9PHAE (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVJ9_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 2.100e-69
Identity = 126/182 (69.23%), Postives = 142/182 (78.02%), Query Frame = 0
Query:    1 MRTLSLAVKNCEGRVPLPVGAKAEGPIADR--VAL------LTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAP--GSPYSLPPGAPLSKPVPVFPRIESLEEA 172
            MRTLS+AVKNC G+VP P  A   G + +    AL      LT ED  LL+SAGEC+GVVRPLVGE QQLHKAL+AIL VSR AN+Y+D QAPW LKKT+P+RMKTVLWVLLETIRHV ILYQPFVP++A  LLDQLGVPEG+ARLF AL    G+ +SL PGAPL KPVPVFPRIE  EEA
Sbjct:  424 MRTLSMAVKNCGGQVPRPATATDAGDVDEGGDKALGREDFDLTPEDVELLKSAGECIGVVRPLVGETQQLHKALEAILLVSREANRYVDFQAPWKLKKTNPDRMKTVLWVLLETIRHVGILYQPFVPEAAGKLLDQLGVPEGDARLFAALEQEGGARFSLQPGAPLDKPVPVFPRIEVPEEA 605          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7S2WKH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKH0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.530e-38
Identity = 85/176 (48.30%), Postives = 108/176 (61.36%), Query Frame = 0
Query:    1 MRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPE-GEARLFTALAPGSP-------YSLPPGAPLSKPVPVFPRIES 168
            MR LSL  KNC   VP P   + +G        L  ED+ LL SA E  G ++  + + Q +HKA DA+ QV R AN+YID QAPWALKKTD  RM  VLW L+ET+RHVA+   PF+P + A +LDQLGVP+ G  R F AL    P       +S+ PG P++KP  +FPRIE+
Sbjct:   10 MRVLSLVFKNCGKEVPTPF-QEDQG--------LNEEDKALLTSAKELYGKMQEEL-DAQAMHKACDALNQVVRQANQYIDEQAPWALKKTDMTRMNIVLWTLMETLRHVAVCASPFMPGAGARMLDQLGVPQDGGHRTFEALQGTEPGVYFDTTFSIQPGTPVTKPDGIFPRIET 175          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A1G6X898_9PROT (Methionine--tRNA ligase n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G6X898_9PROT)

HSP 1 Score: 146 bits (369), Expect = 2.240e-38
Identity = 89/164 (54.27%), Postives = 103/164 (62.80%), Query Frame = 0
Query:    2 RTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPR 165
            R LS+  KNC G VP P      GP+ D       ED  LL  A   L  VR  + + Q  H+AL+A+  V R AN Y+D QAPWAL+KTDP RM TVLW L ETIRHVA+L QP VP SAA +LDQLGVP  +AR FTAL  G   +L PGAPL KP  +FPR
Sbjct:  364 RVLSMIAKNCGGAVPEP------GPLTD-------EDTALLGQARGLLPAVRAAI-DRQAFHEALEALWVVVRAANAYVDRQAPWALRKTDPARMATVLWALAETIRHVAVLIQPVVPDSAARMLDQLGVPS-DARDFTALGEGG--ALVPGAPLPKPQGIFPR 510          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A286GFJ2_9PROT (Methionine--tRNA ligase n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GFJ2_9PROT)

HSP 1 Score: 144 bits (362), Expect = 2.320e-37
Identity = 90/174 (51.72%), Postives = 111/174 (63.79%), Query Frame = 0
Query:    2 RTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRI--ESLEEAK 173
            R LS+  KNC  +VP    A+ E         LTA+D  LL +A   +G +RPL+ + Q  H+AL+AI  V R AN Y+D QAPWAL+KTDP+RM TVLWVL+ET+R VAIL QP  P+SAA +LDQL VP  +AR FTAL  G   +L PG  L KP  VFPR   E  +E K
Sbjct:  363 RVLSMVAKNCGAQVP----ARGE---------LTADDRELLDAAWGLIGRLRPLM-DRQAFHEALEAIWVVVRAANAYVDRQAPWALRKTDPDRMATVLWVLMETVRQVAILMQPVTPESAAKMLDQLAVP-ADARAFTALGEGG--ALVPGTDLPKPQGVFPRFVEEENQETK 519          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A2H6AZS4_9BACT (Methionine--tRNA ligase n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6AZS4_9BACT)

HSP 1 Score: 142 bits (358), Expect = 7.770e-37
Identity = 83/165 (50.30%), Postives = 104/165 (63.03%), Query Frame = 0
Query:    2 RTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAP-GSPYSLPPGAPLSKPVPVFPR 165
            R LSL  ++CEGR+P P G             L ++DE LL  A   L   R  + E Q LH+AL+AI +V   AN+Y+D  APW L+KTDP RM+TVLW L ET+RH+A L QPFVP+++A LLDQLGVP  + R F AL P G+P    PG PL  P P+FPR
Sbjct:  359 RVLSLIARHCEGRMPEPEG-------------LCSDDEALLALAYALLPRTRAAMRE-QALHRALEAIFEVIGEANRYVDTMAPWVLRKTDPTRMRTVLWTLAETLRHIATLTQPFVPRASARLLDQLGVPP-QRRDFAALGPDGTPVV--PGTPLPPPEPIFPR 506          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7S2BNN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNN3_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.230e-36
Identity = 85/171 (49.71%), Postives = 106/171 (61.99%), Query Frame = 0
Query:    1 MRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEE 171
            MR +SL  KNC+G+VP P              LL A+DE +L +A    G + PLV   Q L+KA   +  V R ANKYID QAPWALKKTD  RMKTVLW L+ET+RHVA+   P +P SA C+LDQL V + E R F++LA      +  G P++KP  +FPRIE LEE
Sbjct:   76 MRVMSLVHKNCDGQVPEP-------------GLLNADDEAMLEAARTLHGKMAPLVA-CQSLNKACGEMEVVVRMANKYIDEQAPWALKKTDVPRMKTVLWTLMETLRHVAVCCLPLMPASADCMLDQLAV-KSEHRTFSSLALAEAMVMA-GTPVAKPAGLFPRIE-LEE 229          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7D7ZVL3_FLASK (Methionine--tRNA ligase n=5 Tax=Micrococcaceae TaxID=1268 RepID=A0A7D7ZVL3_FLASK)

HSP 1 Score: 139 bits (351), Expect = 8.590e-36
Identity = 86/171 (50.29%), Postives = 104/171 (60.82%), Query Frame = 0
Query:    2 RTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEEA 172
            R+LS+  KNCEG+VP+P GA             TAED+ LL  AG+ L   R    E Q+  +AL+AI  V  + N Y   QAPW L+KTD ERM TVL+V LE +R VAIL QP +P S+A LL+ LG PEG ARLFTA+A      + PG  L  PVPVFPR E   EA
Sbjct:  367 RSLSMVAKNCEGKVPVP-GA------------FTAEDQALLEQAGKLLETARGAF-EKQEFSRALEAIWTVLGDTNAYFAEQAPWVLRKTDVERMNTVLYVTLEVVRIVAILAQPVMPSSSAKLLEVLGQPEGPARLFTAIA----APIQPGTELPAPVPVFPRYEEPAEA 519          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: B7G4V2_PHATC (Methionine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4V2_PHATC)

HSP 1 Score: 140 bits (352), Expect = 1.080e-35
Identity = 86/166 (51.81%), Postives = 104/166 (62.65%), Query Frame = 0
Query:    2 RTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIE 167
            RTLSL  KNCE  VP PVGA             T EDE LL SA      V   + + Q + K + A++++   ANKYID  APWALKKTDPERM TVL+VLLE +R+ AILYQP +P+SA  +LDQL VP  E R F  L+    YS+  GA +SKPV +FPRIE
Sbjct:  416 RTLSLVFKNCEKAVPNPVGA------------YTPEDEALLESARNLRNKVATEISQ-QSILKYVHAMVEMIWEANKYIDEMAPWALKKTDPERMATVLYVLLEVLRYSAILYQPLIPESAGKILDQLTVPANE-RTFLHLS--EEYSIKAGAAISKPVGIFPRIE 565          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A0W8I833_9MICC (Methionine--tRNA ligase n=14 Tax=Kocuria TaxID=57493 RepID=A0A0W8I833_9MICC)

HSP 1 Score: 139 bits (349), Expect = 1.680e-35
Identity = 83/166 (50.00%), Postives = 100/166 (60.24%), Query Frame = 0
Query:    2 RTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIE 167
            R+LS+  KNCEGRVP+P               LT ED  +L +A      VR    E QQ H+AL+ I +V   AN+Y  A  PW L+KTD ERM TVLWV LE +R V +L QP +P +AA LLD LG  EGEARLFTAL  G+P +   G  L +PVPVFPR E
Sbjct:  366 RSLSMVAKNCEGRVPVP-------------GELTPEDHAMLAAAAGLYAPVRAEFDE-QQFHRALERIWRVVAEANRYFTAMEPWKLRKTDAERMATVLWVTLEVVRVVGVLVQPVMPDAAARLLDVLGQEEGEARLFTAL--GTPLAA--GTELPRPVPVFPRYE 513          
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7S2LM79_9STRA (Methionine--tRNA ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LM79_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.290e-35
Identity = 86/173 (49.71%), Postives = 105/173 (60.69%), Query Frame = 0
Query:    2 RTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEEAKV 174
            RTLS+  KNC   VP  +G+             TAEDE LL  A E   V    +   Q ++K  DA + +  +ANKY+D  APWALKKTDPERM TVL+VL+ET+RHVAI+YQP +P S+  +LDQL VP  E R F  L   SP     GAP+SKPV VFPRIE  E  +V
Sbjct:  429 RTLSMVFKNCGKAVPAEIGS------------YTAEDEALLAKAKELREVASTAIAN-QAINKYADACISLVWDANKYVDDMAPWALKKTDPERMTTVLYVLMETLRHVAIMYQPLMPASSNAVLDQLTVP-AEERTFGHLDT-SPIKF--GAPISKPVGVFPRIEMEEPVQV 584          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVJ9_9PHAE2.100e-6969.23Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WKH0_9STRA1.530e-3848.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1G6X898_9PROT2.240e-3854.27Methionine--tRNA ligase n=1 Tax=Rhodospira trueper... [more]
A0A286GFJ2_9PROT2.320e-3751.72Methionine--tRNA ligase n=1 Tax=Caenispirillum bis... [more]
A0A2H6AZS4_9BACT7.770e-3750.30Methionine--tRNA ligase n=1 Tax=bacterium HR40 Tax... [more]
A0A7S2BNN3_9STRA1.230e-3649.71Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7D7ZVL3_FLASK8.590e-3650.29Methionine--tRNA ligase n=5 Tax=Micrococcaceae Tax... [more]
B7G4V2_PHATC1.080e-3551.81Methionine--tRNA ligase n=1 Tax=Phaeodactylum tric... [more]
A0A0W8I833_9MICC1.680e-3550.00Methionine--tRNA ligase n=14 Tax=Kocuria TaxID=574... [more]
A0A7S2LM79_9STRA4.290e-3549.71Methionine--tRNA ligase n=1 Tax=Leptocylindrus dan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.730.10coord: 1..172
e-value: 2.5E-36
score: 126.9
NoneNo IPR availablePANTHERPTHR43326:SF5coord: 2..169
NoneNo IPR availablePANTHERPTHR43326FAMILY NOT NAMEDcoord: 2..169
IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-bindingSUPERFAMILY47323Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasescoord: 2..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54600contigH-elongata_contig54600:2069..3422 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54600.12846.1mRNA_H-elongata_contig54600.12846.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54600 264..3515 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54600.12846.1 ID=prot_H-elongata_contig54600.12846.1|Name=mRNA_H-elongata_contig54600.12846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLG
VVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVL
WVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSL
PPGAPLSKPVPVFPRIESLEEAKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009080tRNAsynth_Ia_anticodon-bd