mRNA_H-elongata_contig54600.12846.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A6H5KVJ9_9PHAE (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVJ9_9PHAE) HSP 1 Score: 283 bits (723), Expect = 1.400e-81 Identity = 152/213 (71.36%), Postives = 171/213 (80.28%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADR--VAL------LTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAP--GSPYSLPPGAPLSKPVPVFPRIESLEEA 609
+VPFGNDGDFS+ AFQ R+NSNLANEVGNLAMRTLS+AVKNC G+VP P A G + + AL LT ED LL+SAGEC+GVVRPLVGE QQLHKAL+AIL VSR AN+Y+D QAPW LKKT+P+RMKTVLWVLLETIRHV ILYQPFVP++A LLDQLGVPEG+ARLF AL G+ +SL PGAPL KPVPVFPRIE EEA
Sbjct: 393 EVPFGNDGDFSETAFQNRVNSNLANEVGNLAMRTLSMAVKNCGGQVPRPATATDAGDVDEGGDKALGREDFDLTPEDVELLKSAGECIGVVRPLVGETQQLHKALEAILLVSREANRYVDFQAPWKLKKTNPDRMKTVLWVLLETIRHVGILYQPFVPEAAGKLLDQLGVPEGDARLFAALEQEGGARFSLQPGAPLDKPVPVFPRIEVPEEA 605
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A1G6X898_9PROT (Methionine--tRNA ligase n=1 Tax=Rhodospira trueperi TaxID=69960 RepID=A0A1G6X898_9PROT) HSP 1 Score: 187 bits (475), Expect = 1.250e-47 Identity = 109/196 (55.61%), Postives = 128/196 (65.31%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPR 588
+VPFGNDGDFS +A R+N LAN++GNLA R LS+ KNC G VP P GP+ D ED LL A L VR + + Q H+AL+A+ V R AN Y+D QAPWAL+KTDP RM TVLW L ETIRHVA+L QP VP SAA +LDQLGVP +AR FTAL G +L PGAPL KP +FPR
Sbjct: 332 EVPFGNDGDFSHRAMVNRMNGELANDLGNLAQRVLSMIAKNCGGAVPEP------GPLTD-------EDTALLGQARGLLPAVRAAI-DRQAFHEALEALWVVVRAANAYVDRQAPWALRKTDPARMATVLWALAETIRHVAVLIQPVVPDSAARMLDQLGVPS-DARDFTALGEGG--ALVPGAPLPKPQGIFPR 510
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A286GFJ2_9PROT (Methionine--tRNA ligase n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GFJ2_9PROT) HSP 1 Score: 184 bits (468), Expect = 1.150e-46 Identity = 110/206 (53.40%), Postives = 136/206 (66.02%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRI--ESLEEAK 612
+VPFGNDGDFS +A R+N LAN++GNLA R LS+ KNC +VP A+ E LTA+D LL +A +G +RPL+ + Q H+AL+AI V R AN Y+D QAPWAL+KTDP+RM TVLWVL+ET+R VAIL QP P+SAA +LDQL VP +AR FTAL G +L PG L KP VFPR E +E K
Sbjct: 331 EVPFGNDGDFSHRAMVNRMNGELANDLGNLAQRVLSMVAKNCGAQVP----ARGE---------LTADDRELLDAAWGLIGRLRPLM-DRQAFHEALEAIWVVVRAANAYVDRQAPWALRKTDPDRMATVLWVLMETVRQVAILMQPVTPESAAKMLDQLAVP-ADARAFTALGEGG--ALVPGTDLPKPQGVFPRFVEEENQETK 519
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A2H6AZS4_9BACT (Methionine--tRNA ligase n=1 Tax=bacterium HR40 TaxID=2035435 RepID=A0A2H6AZS4_9BACT) HSP 1 Score: 181 bits (458), Expect = 2.180e-45 Identity = 103/197 (52.28%), Postives = 128/197 (64.97%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAP-GSPYSLPPGAPLSKPVPVFPR 588
+VPFG DGDF +A RRIN +LAN+ GNLA R LSL ++CEGR+P P G L ++DE LL A L R + E Q LH+AL+AI +V AN+Y+D APW L+KTDP RM+TVLW L ET+RH+A L QPFVP+++A LLDQLGVP + R F AL P G+P PG PL P P+FPR
Sbjct: 327 EVPFGQDGDFRHEAMVRRINHDLANDYGNLAQRVLSLIARHCEGRMPEPEG-------------LCSDDEALLALAYALLPRTRAAMRE-QALHRALEAIFEVIGEANRYVDTMAPWVLRKTDPTRMRTVLWTLAETLRHIATLTQPFVPRASARLLDQLGVPP-QRRDFAALGPDGTPVV--PGTPLPPPEPIFPR 506
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: B7G4V2_PHATC (Methionine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4V2_PHATC) HSP 1 Score: 180 bits (457), Expect = 8.850e-45 Identity = 106/198 (53.54%), Postives = 130/198 (65.66%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIE 594
+V FGNDGDFSD+A ++ N+NLANE+GNL RTLSL KNCE VP PVGA T EDE LL SA V + + Q + K + A++++ ANKYID APWALKKTDPERM TVL+VLLE +R+ AILYQP +P+SA +LDQL VP E R F L+ YS+ GA +SKPV +FPRIE
Sbjct: 384 EVNFGNDGDFSDRAMIQKCNTNLANELGNLCQRTLSLVFKNCEKAVPNPVGA------------YTPEDEALLESARNLRNKVATEISQ-QSILKYVHAMVEMIWEANKYIDEMAPWALKKTDPERMATVLYVLLEVLRYSAILYQPLIPESAGKILDQLTVPANE-RTFLHLS--EEYSIKAGAAISKPVGIFPRIE 565
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7S2LM79_9STRA (Methionine--tRNA ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LM79_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.910e-44 Identity = 106/205 (51.71%), Postives = 132/205 (64.39%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEEAKV 615
+V FG+DGDFSD+ +++NSNLANE+GNLA RTLS+ KNC VP +G+ TAEDE LL A E V + Q ++K DA + + +ANKY+D APWALKKTDPERM TVL+VL+ET+RHVAI+YQP +P S+ +LDQL VP E R F L SP GAP+SKPV VFPRIE E +V
Sbjct: 397 EVTFGSDGDFSDEKMVQKVNSNLANELGNLAQRTLSMVFKNCGKAVPAEIGS------------YTAEDEALLAKAKELREVASTAIAN-QAINKYADACISLVWDANKYVDDMAPWALKKTDPERMTTVLYVLMETLRHVAIMYQPLMPASSNAVLDQLTVP-AEERTFGHLDT-SPIKF--GAPISKPVGVFPRIEMEEPVQV 584
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7W6RY56_9PROT (Methionine--tRNA ligase n=1 Tax=Roseospira goensis TaxID=391922 RepID=A0A7W6RY56_9PROT) HSP 1 Score: 178 bits (451), Expect = 2.170e-44 Identity = 107/196 (54.59%), Postives = 129/196 (65.82%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPR 588
+VPFGNDGDFS +A R+N +LAN++GNLA R LS+ KNC G VP P GP+ + +L A+ GLL VR V + Q H+AL+A+ V R AN Y+D QAPWAL+KTDP RM TVL+VL ETIRHVAIL QP VP SAA +LDQLGV +AR F AL G +L PG+PL KP VFPR
Sbjct: 332 EVPFGNDGDFSHRAMVGRMNGDLANDLGNLAQRVLSMIAKNCGGSVPTP------GPLTEDDTVLLAQAYGLLPQ-------VRAAV-DRQAFHEALEAVWVVVRAANAYVDRQAPWALRKTDPGRMATVLYVLAETIRHVAILVQPVVPDSAARMLDQLGV-AADARGFEALGEGG--ALTPGSPLPKPQGVFPR 510
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A192IJN7_9HYPH (Methionine--tRNA ligase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IJN7_9HYPH) HSP 1 Score: 177 bits (448), Expect = 5.900e-44 Identity = 100/204 (49.02%), Postives = 132/204 (64.71%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEEAK 612
+VPFGNDGDFS A RIN +LAN++GNL R LS+ KNC+G+VP P GP+ D D LL+ A +G VR + ++Q LHKAL I V +AN+Y+DAQAPW L+K+DP RM+TVL+VL ET+R +AIL QP P++ A +LD LG+ EAR F +L G L PG P+ KP P+FPR ++ E A+
Sbjct: 336 EVPFGNDGDFSHAAMVHRINGDLANDLGNLCQRVLSMVHKNCDGQVPEP------GPLTDA-------DAALLQKADTAIGRVREQM-DVQALHKALAEIWTVVGDANRYVDAQAPWVLRKSDPARMRTVLYVLAETVRQIAILVQPVTPRAGAAMLDLLGIAP-EARGFDSL--GDAARLAPGTPVDKPAPIFPRYQAEEAAE 522
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A8TUQ9_9PROT (Methionine--tRNA ligase n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TUQ9_9PROT) HSP 1 Score: 176 bits (447), Expect = 7.090e-44 Identity = 108/203 (53.20%), Postives = 126/203 (62.07%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPRIESLEEA 609
++PFGNDGDFS +A R+NS LAN++GNL+ R LS+ KNC G VP P GA A A DE LL +A L R + Q HKALDAI V AN+Y+D QAPW L+KTDP RM TVL+ L+ETIRHVAIL QP VP S +LDQL VP +AR F L P Y L PG PL KP VFPR + EEA
Sbjct: 328 ELPFGNDGDFSHRAMINRMNSELANDLGNLSQRVLSMVAKNCAGAVPQP-GAFA------------AADEALLGAADALLESQRAAY-DTQAFHKALDAIFDVVGRANRYVDEQAPWTLRKTDPARMATVLYTLVETIRHVAILLQPIVPGSCERMLDQLAVP-ADARDFDRLTPD--YRLVPGTPLPKPEGVFPRWVAEEEA 513
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Match: A0A7V2RUM3_9PROT (Methionine--tRNA ligase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2RUM3_9PROT) HSP 1 Score: 175 bits (444), Expect = 1.090e-43 Identity = 100/196 (51.02%), Postives = 126/196 (64.29%), Query Frame = 1
Query: 1 QVPFGNDGDFSDKAFQRRINSNLANEVGNLAMRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGVVRPLVGEMQQLHKALDAILQVSRNANKYIDAQAPWALKKTDPERMKTVLWVLLETIRHVAILYQPFVPKSAACLLDQLGVPEGEARLFTALAPGSPYSLPPGAPLSKPVPVFPR 588
+VPFG DGDF +A RRIN +LAN+ GNLA R LS+ +NCEGRVP P GP+A A DE LL A L +R + +Q LH+AL+ + ++ AN+Y+DAQAPWAL+K+DP RM+TVLW L ETIRH+A+L PF+P++A LLDQL V E E R T G P L PG L +P VFPR
Sbjct: 305 EVPFGQDGDFRHEAMVRRINHDLANDYGNLAQRVLSMIARNCEGRVPQP------GPLA-------AADEALLARAHALLPAMREAMA-VQALHRALELVWELVGEANRYVDAQAPWALRKSDPARMRTVLWTLAETIRHIALLTLPFLPRAAGRLLDQLAVAEEERRFATLGPKGRP--LVPGTVLPRPQGVFPR 484 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54600.12846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54600.12846.1 >prot_H-elongata_contig54600.12846.1 ID=prot_H-elongata_contig54600.12846.1|Name=mRNA_H-elongata_contig54600.12846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp MRTLSLAVKNCEGRVPLPVGAKAEGPIADRVALLTAEDEGLLRSAGECLGback to top mRNA from alignment at H-elongata_contig54600:264..3515- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54600.12846.1 ID=mRNA_H-elongata_contig54600.12846.1|Name=mRNA_H-elongata_contig54600.12846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3252bp|location=Sequence derived from alignment at H-elongata_contig54600:264..3515- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54600:264..3515- >mRNA_H-elongata_contig54600.12846.1 ID=mRNA_H-elongata_contig54600.12846.1|Name=mRNA_H-elongata_contig54600.12846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig54600:264..3515- (Himanthalia elongata Himel1 dioecious)back to top |