prot_H-elongata_contig54476.12830.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54476.12830.1
Unique Nameprot_H-elongata_contig54476.12830.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length580
Homology
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BLAST of mRNA_H-elongata_contig54476.12830.1 vs. uniprot
Match: D7FVM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM3_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 7.250e-25
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 0 
Query:  476 SSKVGDLFELMRSVSANAAXXXXXXXXXXXRRS----EGEASESREIGRPVKYKYRQEAARSRKRTRGRFVSEKAPPFVSITELMAARRAEREQQKKQDTTPVPVGA 578
            SSKVGDLF+LMR+V+ +   XXXXXXXXXX       +GE + +RE G+PVKY+YRQEAARSRKRTRGRFVSEKAP FVSITELMA RRAERE+Q+K +TTPVPVGA
Sbjct:  234 SSKVGDLFQLMRNVTMSFGGXXXXXXXXXXXXXXGAVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGA 340
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BLAST of mRNA_H-elongata_contig54476.12830.1 vs. uniprot
Match: A0A6H5JCF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 9.380e-25
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 0 
Query:  477 SKVGDLFELMRSVSANAAXXXXXXXXXXXRRSEGEASESREIGRPVKYKYRQEAARSRKRTRGRFVSEKAPPFVSITELMAARRAEREQQKKQDTTPVPVGA 578
            SKVGDLF+LMR+V+ +                +GE + +RE G+PVKY+YRQEAARSRKRTRGRFVSEKAP FVSITELMA RRAERE+Q+K +TTPVPVGA
Sbjct:  640 SKVGDLFQLMRNVTMSFGGDGGGGRDGAGGAVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGA 741
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54476.12830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVM3_ECTSI7.250e-2572.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCF1_9PHAE9.380e-2565.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 229..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54476contigH-elongata_contig54476:1194..3316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54476.12830.1mRNA_H-elongata_contig54476.12830.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54476 945..3316 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54476.12830.1 ID=prot_H-elongata_contig54476.12830.1|Name=mRNA_H-elongata_contig54476.12830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=580bp
MRSARDKELDGAVAGLLCLHSYKRPTHVLRSASQLGAVSASSTPATEHNT
WVGASSPSSLYPMATTDRTRYPDAIFAEDPCSYPFYSTHRALRPRFTTTQ
LRSDYVDFPAAAARLVAAQQSNYSISGGSGPWTAGQRYFESKAPDPRSIV
TFRGFPMGAGTRHNQPHERNIPSPLGQRHRPPALRVYAEPATAKPQFPQA
EQDFAFDQYRNGHVHSKHQQYQQPSLQPQNKQEQQQQQQQQEQQQQRQQQ
QQQQQQQEHKQLSIDQLWSLIPGNFNKVDHARSEKHIGKSAQGSGESFPT
VDAETRSDEPVPDASVRHGAQQSQNIHERSCRRIVQDIHQPLSHSQRVRR
ARAIARLRARRRVLAAAEAAATAGRATGVVKRRFSDAIVEAENSDGENDR
SFSVEGKEADTMESNSSSDKSFGSISGDGESPRKADESSIGEQRVASGTP
DTGAKLKARSLSIISSSSNTSSTGTSSKVGDLFELMRSVSANAAAAALAA
EGGGGRRSEGEASESREIGRPVKYKYRQEAARSRKRTRGRFVSEKAPPFV
SITELMAARRAEREQQKKQDTTPVPVGAR*
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