mRNA_H-elongata_contig54476.12830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54476.12830.1
Unique NamemRNA_H-elongata_contig54476.12830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54476.12830.1 vs. uniprot
Match: D7FVM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM3_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.060e-24
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 1 
Query: 1675 SSKVGDLFELMRSVSANAAXXXXXXXXXXXRRS----EGEASESREIGRPVKYKYRQEAARSRKRTRGRFVSEKAPPFVSITELMAARRAEREQQKKQDTTPVPVGA 1983
            SSKVGDLF+LMR+V+ +   XXXXXXXXXX       +GE + +RE G+PVKY+YRQEAARSRKRTRGRFVSEKAP FVSITELMA RRAERE+Q+K +TTPVPVGA
Sbjct:  234 SSKVGDLFQLMRNVTMSFGGXXXXXXXXXXXXXXGAVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGA 340
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BLAST of mRNA_H-elongata_contig54476.12830.1 vs. uniprot
Match: A0A6H5JCF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.650e-24
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 1 
Query: 1678 SKVGDLFELMRSVSANAAXXXXXXXXXXXRRSEGEASESREIGRPVKYKYRQEAARSRKRTRGRFVSEKAPPFVSITELMAARRAEREQQKKQDTTPVPVGA 1983
            SKVGDLF+LMR+V+ +                +GE + +RE G+PVKY+YRQEAARSRKRTRGRFVSEKAP FVSITELMA RRAERE+Q+K +TTPVPVGA
Sbjct:  640 SKVGDLFQLMRNVTMSFGGDGGGGRDGAGGAVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGA 741
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54476.12830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVM3_ECTSI1.060e-2472.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCF1_9PHAE1.650e-2465.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54476contigH-elongata_contig54476:945..3316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1989
Cds size1740
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54476.12830.1prot_H-elongata_contig54476.12830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54476 1194..3316 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.6451318-UTR-H-elongata_contig54476:944..11931622930887.6451318-UTR-H-elongata_contig54476:944..1193Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54476 945..1193 +
1691679612.267991-UTR-H-elongata_contig54476:944..11931691679612.267991-UTR-H-elongata_contig54476:944..1193Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54476 945..1193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.6605895-CDS-H-elongata_contig54476:1193..12641622930887.6605895-CDS-H-elongata_contig54476:1193..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54476 1194..1264 +
1691679612.2761552-CDS-H-elongata_contig54476:1193..12641691679612.2761552-CDS-H-elongata_contig54476:1193..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54476 1194..1264 +
1622930887.677744-CDS-H-elongata_contig54476:1647..33161622930887.677744-CDS-H-elongata_contig54476:1647..3316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54476 1648..3316 +
1691679612.2843168-CDS-H-elongata_contig54476:1647..33161691679612.2843168-CDS-H-elongata_contig54476:1647..3316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54476 1648..3316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54476.12830.1

>prot_H-elongata_contig54476.12830.1 ID=prot_H-elongata_contig54476.12830.1|Name=mRNA_H-elongata_contig54476.12830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=580bp
MRSARDKELDGAVAGLLCLHSYKRPTHVLRSASQLGAVSASSTPATEHNT
WVGASSPSSLYPMATTDRTRYPDAIFAEDPCSYPFYSTHRALRPRFTTTQ
LRSDYVDFPAAAARLVAAQQSNYSISGGSGPWTAGQRYFESKAPDPRSIV
TFRGFPMGAGTRHNQPHERNIPSPLGQRHRPPALRVYAEPATAKPQFPQA
EQDFAFDQYRNGHVHSKHQQYQQPSLQPQNKQEQQQQQQQQEQQQQRQQQ
QQQQQQQEHKQLSIDQLWSLIPGNFNKVDHARSEKHIGKSAQGSGESFPT
VDAETRSDEPVPDASVRHGAQQSQNIHERSCRRIVQDIHQPLSHSQRVRR
ARAIARLRARRRVLAAAEAAATAGRATGVVKRRFSDAIVEAENSDGENDR
SFSVEGKEADTMESNSSSDKSFGSISGDGESPRKADESSIGEQRVASGTP
DTGAKLKARSLSIISSSSNTSSTGTSSKVGDLFELMRSVSANAAAAALAA
EGGGGRRSEGEASESREIGRPVKYKYRQEAARSRKRTRGRFVSEKAPPFV
SITELMAARRAEREQQKKQDTTPVPVGAR*
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mRNA from alignment at H-elongata_contig54476:945..3316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54476.12830.1 ID=mRNA_H-elongata_contig54476.12830.1|Name=mRNA_H-elongata_contig54476.12830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2372bp|location=Sequence derived from alignment at H-elongata_contig54476:945..3316+ (Himanthalia elongata Himel1 dioecious)
TGACCCCGAAACGAGCCCCTTCCGTCTCTCTCTATCGCTGCGTGCTTGGT
ATCAACACCCCCCCTTAAAAGCTTCGCAAGGTAGGCGCAAAGGAGTTGCA
TCAAGCCAAGGGAAAGAATCTTGCCTGCTCAAGCAGTGGGATCCCGCGGA
TTAAGGCTGTCTATATTTTCCGATAGCGCTTCCTTTGTTGGACCATCATA
TAACGAGACATCTGAACGTTAACCCCCCTGACAGACGTGCCCTGGGACTA
TGCGAAGCGCAAGGGATAAAGAGCTCGACGGGGCTGTCGCCGGACTGTTG
TGCCTCCACTCGTACAAGAGGTATGTGTCTGTGCGCCTGTGTATCTGTTT
CGAGTTTACCCTAGCTCCCTTTTCCTGACTCACCCCAAGTTTTCGCTGTC
GTGCGTGTGACTCGAAACACAAGGATCGAATTTTTGTAAGGACCTCGCTT
TTGTTTTCCAATATTGAGCTCGATCATATCGACGTACGCCCACACACCAC
ACACATCGATTATTACCCTGCTCAGCAGGTAAACGCGTTGCTACGTAAAA
TGCGTATTTTGGATGTGGACTTTGGTGAGTGCGCTTTAGTCTCACGTGGG
ATATTCTACATAATAAGTGCCCGCACACCTGCAGCTTTGAGCTTGCGTGA
TCCTCGTAAGCCCTCCCGTGATCTTCCCTCCAATTCCTACCTGCGCAACC
CAGACCGACGCATGTGCTCAGGTCGGCCTCCCAGTTAGGAGCCGTCTCCG
CTTCATCCACCCCAGCAACAGAACACAATACGTGGGTAGGCGCCTCCTCG
CCCAGCTCGTTATATCCGATGGCCACCACCGACAGAACCAGGTACCCGGA
CGCCATCTTCGCCGAGGACCCTTGTTCCTACCCCTTCTACTCAACACATC
GTGCTCTCCGCCCCAGATTCACGACAACACAGCTTCGGTCTGATTACGTT
GACTTCCCTGCTGCGGCTGCAAGATTAGTGGCGGCGCAGCAAAGCAATTA
TAGCATATCGGGCGGCTCTGGACCGTGGACAGCGGGTCAACGATATTTCG
AGTCGAAAGCTCCGGATCCGAGGTCGATAGTCACGTTCCGGGGCTTCCCG
ATGGGAGCCGGGACACGGCACAACCAACCACACGAAAGAAATATCCCTTC
ACCTTTAGGGCAGCGTCACCGGCCGCCGGCCTTGCGCGTCTACGCTGAAC
CCGCAACGGCAAAGCCGCAGTTTCCGCAGGCCGAGCAGGATTTTGCCTTT
GACCAATATCGAAATGGCCATGTACATTCAAAGCATCAGCAGTATCAGCA
ACCGTCGTTGCAGCCACAGAACAAGCAGGAACAACAACAGCAGCAACAGC
AACAAGAGCAACAACAGCAGCGACAGCAGCAGCAACAACAGCAGCAGCAA
CAGGAGCATAAGCAGCTCTCCATTGATCAACTTTGGAGCCTAATACCGGG
CAACTTCAATAAAGTAGACCATGCCCGCAGCGAAAAACATATAGGCAAAA
GCGCACAGGGGAGCGGCGAATCATTTCCCACCGTGGACGCGGAAACGCGT
AGCGACGAGCCGGTACCCGACGCTTCCGTGAGGCATGGGGCGCAACAGAG
CCAAAACATCCACGAACGCTCTTGCAGGCGGATCGTCCAAGACATTCACC
AGCCGTTGTCTCACAGCCAGCGTGTGCGGCGCGCAAGGGCTATCGCCCGA
TTGCGTGCCCGCCGACGCGTCTTGGCGGCAGCGGAAGCCGCCGCGACTGC
AGGTCGCGCAACAGGGGTGGTAAAAAGGCGCTTTTCTGACGCCATAGTCG
AGGCTGAAAACAGCGACGGCGAAAACGATAGATCTTTCAGCGTCGAAGGC
AAGGAGGCCGACACCATGGAGTCGAATTCAAGCAGCGACAAGTCCTTCGG
AAGTATCAGCGGTGACGGTGAGTCCCCCCGCAAGGCTGACGAAAGTTCAA
TAGGCGAGCAGAGAGTTGCTTCGGGTACCCCAGACACCGGAGCGAAACTA
AAAGCAAGATCTCTGAGTATTATCAGCAGCAGCAGCAATACCAGCAGTAC
AGGCACGTCGTCCAAGGTTGGGGATCTATTTGAGCTCATGCGGTCCGTGA
GTGCGAACGCGGCGGCCGCGGCGCTTGCGGCGGAAGGCGGTGGAGGCCGT
CGTTCCGAGGGCGAAGCGTCCGAGAGCCGCGAGATCGGGCGGCCCGTCAA
ATACAAGTACCGCCAAGAAGCCGCCCGATCGCGGAAGCGCACCCGAGGTC
GATTCGTTAGCGAGAAGGCGCCGCCGTTCGTTTCGATCACTGAACTCATG
GCGGCGCGGAGGGCTGAGCGCGAGCAGCAGAAAAAACAAGATACAACTCC
CGTACCAGTCGGGGCAAGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig54476:945..3316+

>mRNA_H-elongata_contig54476.12830.1 ID=mRNA_H-elongata_contig54476.12830.1|Name=mRNA_H-elongata_contig54476.12830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3480bp|location=Sequence derived from alignment at H-elongata_contig54476:945..3316+ (Himanthalia elongata Himel1 dioecious)
ATGCGAAGCGCAAGGGATAAAGAGCTCGACGGGGCTGTCGCCGGACTGTT
GTGCCTCCACTCGTACAAGAGATGCGAAGCGCAAGGGATAAAGAGCTCGA
CGGGGCTGTCGCCGGACTGTTGTGCCTCCACTCGTACAAGAGACCGACGC
ATGTGCTCAGGTCGGCCTCCCAGTTAGGAGCCGTCTCCGCTTCATCCACC
CCAGCAACAGAACACAATACGTGGGTAGGCGCCTCCTCGCCCAGCTCGTT
ATATCCGATGGCCACCACCGACAGAACCAGGTACCCGGACGCCATCTTCG
CCGAGGACCCTTGTTCCTACCCCTTCTACTCAACACATCGTGCTCTCCGC
CCCAGATTCACGACAACACAGCTTCGGTCTGATTACGTTGACTTCCCTGC
TGCGGCTGCAAGATTAGTGGCGGCGCAGCAAAGCAATTATAGCATATCGG
GCGGCTCTGGACCGTGGACAGCGGGTCAACGATATTTCGAGTCGAAAGCT
CCGGATCCGAGGTCGATAGTCACGTTCCGGGGCTTCCCGATGGGAGCCGG
GACACGGCACAACCAACCACACGAAAGAAATATCCCTTCACCTTTAGGGC
AGCGTCACCGGCCGCCGGCCTTGCGCGTCTACGCTGAACCCGCAACGGCA
AAGCCGCAGTTTCCGCAGGCCGAGCAGGATTTTGCCTTTGACCAATATCG
AAATGGCCATGTACATTCAAAGCATCAGCAGTATCAGCAACCGTCGTTGC
AGCCACAGAACAAGCAGGAACAACAACAGCAGCAACAGCAACAAGAGCAA
CAACAGCAGCGACAGCAGCAGCAACAACAGCAGCAGCAACAGGAGCATAA
GCAGCTCTCCATTGATCAACTTTGGAGCCTAATACCGGGCAACTTCAATA
AAGTAGACCATGCCCGCAGCGAAAAACATATAGGCAAAAGCGCACAGGGG
AGCGGCGAATCATTTCCCACCGTGGACGCGGAAACGCGTAGCGACGAGCC
GGTACCCGACGCTTCCGTGAGGCATGGGGCGCAACAGAGCCAAAACATCC
ACGAACGCTCTTGCAGGCGGATCGTCCAAGACATTCACCAGCCGTTGTCT
CACAGCCAGCGTGTGCGGCGCGCAAGGGCTATCGCCCGATTGCGTGCCCG
CCGACGCGTCTTGGCGGCAGCGGAAGCCGCCGCGACTGCAGGTCGCGCAA
CAGGGGTGGTAAAAAGGCGCTTTTCTGACGCCATAGTCGAGGCTGAAAAC
AGCGACGGCGAAAACGATAGATCTTTCAGCGTCGAAGGCAAGGAGGCCGA
CACCATGGAGTCGAATTCAAGCAGCGACAAGTCCTTCGGAAGTATCAGCG
GTGACGGTGAGTCCCCCCGCAAGGCTGACGAAAGTTCAATAGGCGAGCAG
AGAGTTGCTTCGGGTACCCCAGACACCGGAGCGAAACTAAAAGCAAGATC
TCTGAGTATTATCAGCAGCAGCAGCAATACCAGCAGTACAGGCACGTCGT
CCAAGGTTGGGGATCTATTTGAGCTCATGCGGTCCGTGAGTGCGAACGCG
GCGGCCGCGGCGCTTGCGGCGGAAGGCGGTGGAGGCCGTCGTTCCGAGGG
CGAAGCGTCCGAGAGCCGCGAGATCGGGCGGCCCGTCAAATACAAGTACC
GCCAAGAAGCCGCCCGATCGCGGAAGCGCACCCGAGGTCGATTCGTTAGC
GAGAAGGCGCCGCCGTTCGTTTCGATCACTGAACTCATGGCGGCGCGGAG
GGCTGAGCGCGAGCAGCAGAAAAAACAAGATACAACTCCCGTACCAGTCG
GGGCAAGATGAACCGACGCATGTGCTCAGGTCGGCCTCCCAGTTAGGAGC
CGTCTCCGCTTCATCCACCCCAGCAACAGAACACAATACGTGGGTAGGCG
CCTCCTCGCCCAGCTCGTTATATCCGATGGCCACCACCGACAGAACCAGG
TACCCGGACGCCATCTTCGCCGAGGACCCTTGTTCCTACCCCTTCTACTC
AACACATCGTGCTCTCCGCCCCAGATTCACGACAACACAGCTTCGGTCTG
ATTACGTTGACTTCCCTGCTGCGGCTGCAAGATTAGTGGCGGCGCAGCAA
AGCAATTATAGCATATCGGGCGGCTCTGGACCGTGGACAGCGGGTCAACG
ATATTTCGAGTCGAAAGCTCCGGATCCGAGGTCGATAGTCACGTTCCGGG
GCTTCCCGATGGGAGCCGGGACACGGCACAACCAACCACACGAAAGAAAT
ATCCCTTCACCTTTAGGGCAGCGTCACCGGCCGCCGGCCTTGCGCGTCTA
CGCTGAACCCGCAACGGCAAAGCCGCAGTTTCCGCAGGCCGAGCAGGATT
TTGCCTTTGACCAATATCGAAATGGCCATGTACATTCAAAGCATCAGCAG
TATCAGCAACCGTCGTTGCAGCCACAGAACAAGCAGGAACAACAACAGCA
GCAACAGCAACAAGAGCAACAACAGCAGCGACAGCAGCAGCAACAACAGC
AGCAGCAACAGGAGCATAAGCAGCTCTCCATTGATCAACTTTGGAGCCTA
ATACCGGGCAACTTCAATAAAGTAGACCATGCCCGCAGCGAAAAACATAT
AGGCAAAAGCGCACAGGGGAGCGGCGAATCATTTCCCACCGTGGACGCGG
AAACGCGTAGCGACGAGCCGGTACCCGACGCTTCCGTGAGGCATGGGGCG
CAACAGAGCCAAAACATCCACGAACGCTCTTGCAGGCGGATCGTCCAAGA
CATTCACCAGCCGTTGTCTCACAGCCAGCGTGTGCGGCGCGCAAGGGCTA
TCGCCCGATTGCGTGCCCGCCGACGCGTCTTGGCGGCAGCGGAAGCCGCC
GCGACTGCAGGTCGCGCAACAGGGGTGGTAAAAAGGCGCTTTTCTGACGC
CATAGTCGAGGCTGAAAACAGCGACGGCGAAAACGATAGATCTTTCAGCG
TCGAAGGCAAGGAGGCCGACACCATGGAGTCGAATTCAAGCAGCGACAAG
TCCTTCGGAAGTATCAGCGGTGACGGTGAGTCCCCCCGCAAGGCTGACGA
AAGTTCAATAGGCGAGCAGAGAGTTGCTTCGGGTACCCCAGACACCGGAG
CGAAACTAAAAGCAAGATCTCTGAGTATTATCAGCAGCAGCAGCAATACC
AGCAGTACAGGCACGTCGTCCAAGGTTGGGGATCTATTTGAGCTCATGCG
GTCCGTGAGTGCGAACGCGGCGGCCGCGGCGCTTGCGGCGGAAGGCGGTG
GAGGCCGTCGTTCCGAGGGCGAAGCGTCCGAGAGCCGCGAGATCGGGCGG
CCCGTCAAATACAAGTACCGCCAAGAAGCCGCCCGATCGCGGAAGCGCAC
CCGAGGTCGATTCGTTAGCGAGAAGGCGCCGCCGTTCGTTTCGATCACTG
AACTCATGGCGGCGCGGAGGGCTGAGCGCGAGCAGCAGAAAAAACAAGAT
ACAACTCCCGTACCAGTCGGGGCAAGATGA
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