prot_H-elongata_contig54437.12823.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54437.12823.1
Unique Nameprot_H-elongata_contig54437.12823.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length189
Homology
BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: A0A6H5JA84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA84_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.580e-9
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:  138 MDKVKVLKPASYDKIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIG 187
            M++V+ L PA++ K+   P ++WANYAC++N IWDQ TSN SES N +IG
Sbjct:    1 MNEVQNLNPAAFKKLNDTPHNTWANYACKNNVIWDQTTSNFSESLNKLIG 50          
BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: UPI001035699E (uncharacterized protein LOC114268089 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001035699E)

HSP 1 Score: 62.0 bits (149), Expect = 2.080e-8
Identity = 51/177 (28.81%), Postives = 75/177 (42.37%), Query Frame = 0
Query:   12 CMDCCHLKGIWNGIMCLLTVKDADNKLVIVCIVVSAVENADVYDYTLLHAKKKTDMAGFVNHETATYFVDGHKGSVAGLPRGVPLSEGRRCLRHIVGNITTAV-GADCNKLIFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYA----CRSNHIWDQVTSNMSESSN 183
            C+D CHLKG + G++  +   D DN L ++   V   E    + + L H +   D       +  T   DG KG    L    P +  RRC RH+  N  +   G       +  AR   E  +N  M +++ +   +Y  +  L    WA +      +SNHI    TSNM ES N
Sbjct:   48 CVDGCHLKGSYGGVLLAVVALDRDNGLFLLAYAVVECECKKNWRFFLYHLRTIIDNGP--QSKPRTIMSDGQKGIEPALKEVTPEATHRRCCRHLFNNFKSKFPGLKLRGSFWAVARAYTEKDYNIVMRQIEEMPKPAYKWLNDLKLEVWARHTFDPRVKSNHI----TSNMVESFN 218          
BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: A0A6H5KPK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.140e-8
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query:  122 IFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIG 187
            ++EAAR  ++      +DK+  L PA+ + I   PR  WA YA R N + DQVTSNMSE++N+MIG
Sbjct:    1 MYEAARATDKATCEANIDKIAALNPAAGEYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMIG 66          
BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: A0A6H5JN60_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN60_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.030e-6
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0
Query:  122 IFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIG 187
            ++EAAR  ++      +DK+  L PA+   I   PR  WA YA R N + DQVTSNMSE++N+M+G
Sbjct:    1 MYEAARATDKATCEANIDKIAALNPAAGKYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMMG 66          
BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: A0A6H5KFP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.630e-6
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 0
Query:  122 IFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIG 187
            ++EAAR  ++      +DK+  L PA+   I    R  WA YA R N + DQVTSNMSE++N+M+G
Sbjct:    1 MYEAARATDKATCEANIDKIAALNPAAGKYIRLQTRHEWAMYATRGNVVQDQVTSNMSETANNMMG 66          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JA84_9PHAE6.580e-954.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001035699E2.080e-828.81uncharacterized protein LOC114268089 n=1 Tax=Camel... [more]
A0A6H5KPK8_9PHAE5.140e-846.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN60_9PHAE1.030e-645.45SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KFP9_9PHAE5.630e-643.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54437contigH-elongata_contig54437:360..1334 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54437.12823.1mRNA_H-elongata_contig54437.12823.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54437 360..1334 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54437.12823.1 ID=prot_H-elongata_contig54437.12823.1|Name=mRNA_H-elongata_contig54437.12823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
CYRGFVSTQVFCMDCCHLKGIWNGIMCLLTVKDADNKLVIVCIVVSAVEN
ADVYDYTLLHAKKKTDMAGFVNHETATYFVDGHKGSVAGLPRGVPLSEGR
RCLRHIVGNITTAVGADCNKLIFEAAREPNEMLFNECMDKVKVLKPASYD
KIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIGNV
back to top