mRNA_H-elongata_contig54437.12823.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54437.12823.1
Unique NamemRNA_H-elongata_contig54437.12823.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: UPI0019D59E7C (uncharacterized protein LOC120677791 isoform X1 n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D59E7C)

HSP 1 Score: 68.6 bits (166), Expect = 3.960e-10
Identity = 47/163 (28.83%), Postives = 77/163 (47.24%), Query Frame = 1 
Query:    1 CYRGFVST--QVFCMDCCHLKGIWNGIMCLLTVKDADNKLVIVCIVVSAVENADVYDYTLLHAKKKTDMAGFVNHETATYFVDGHKGSVAGLPRGVPLSEGRRCLRHIVGNITTAV-GADCNKLIFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSW 480
            C RGF++    + C+D CHLK  + GIM      D ++ +  +   V  VE+   + + L   K   D  G  N    T   D  KG +  + +  P SE R C+RH+  N      G +    ++  AR    + +NE MDK+KVL   +++ +  +P ++W
Sbjct:  463 CKRGFLAACRPLICLDGCHLKTKYGGIMLTAVGIDPNDCIYPIAFAVVEVESLSSWKWFLQTLK---DDLGIENTYPWTIMTDKQKGLIPAVGQVFPESEHRFCVRHLYSNFQQHFKGENLKNQLWACARSTTVVRWNENMDKMKVLDQKAFEWLEKMPPNTW 622
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BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: UPI000989F06A (uncharacterized protein LOC109758763 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI000989F06A)

HSP 1 Score: 65.9 bits (159), Expect = 2.580e-9
Identity = 46/147 (31.29%), Postives = 74/147 (50.34%), Query Frame = 1 
Query:    1 CYRGFVST--QVFCMDCCHLKGIWNGIMCLLTVKDADNKLVIVCIVVSAVENADVYDYTLLHAKKKTDMAGFVNHETATYFVDGHKGSVAGLPRGVPLSEGRRCLRHIVGNIT-TAVGADCNKLIFEAAREPNEMLFNECMDKVKVL 432
            C RGF+     V C+D CHLK  + G+M      D ++ +  +   V  VEN D + + L  +  K+D+ G +N E  T  +D  K  + G+ +  P +E R C+RHI  N   T  G   N  +++ AR     L+   M+++KV+
Sbjct:  245 CKRGFMQACRPVICLDGCHLKTKYGGVMLCAVGMDPNDCIYPLAFAVVEVENTDTWKWFL--SNLKSDL-GILNTEPWTIMLDKQKELIKGVRQHFPDAEHRHCVRHIWQNFQQTHKGDVLNNQLWKCARSTTPELWAASMEEMKVI 388
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BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: A0A6H5JA84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA84_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.580e-9
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:  412 MDKVKVLKPASYDKIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIG 561
            M++V+ L PA++ K+   P ++WANYAC++N IWDQ TSN SES N +IG
Sbjct:    1 MNEVQNLNPAAFKKLNDTPHNTWANYACKNNVIWDQTTSNFSESLNKLIG 50
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BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: UPI001035699E (uncharacterized protein LOC114268089 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001035699E)

HSP 1 Score: 62.0 bits (149), Expect = 2.080e-8
Identity = 51/177 (28.81%), Postives = 75/177 (42.37%), Query Frame = 1 
Query:   34 CMDCCHLKGIWNGIMCLLTVKDADNKLVIVCIVVSAVENADVYDYTLLHAKKKTDMAGFVNHETATYFVDGHKGSVAGLPRGVPLSEGRRCLRHIVGNITTAV-GADCNKLIFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYA----CRSNHIWDQVTSNMSESSN 549
            C+D CHLKG + G++  +   D DN L ++   V   E    + + L H +   D       +  T   DG KG    L    P +  RRC RH+  N  +   G       +  AR   E  +N  M +++ +   +Y  +  L    WA +      +SNHI    TSNM ES N
Sbjct:   48 CVDGCHLKGSYGGVLLAVVALDRDNGLFLLAYAVVECECKKNWRFFLYHLRTIIDNGP--QSKPRTIMSDGQKGIEPALKEVTPEATHRRCCRHLFNNFKSKFPGLKLRGSFWAVARAYTEKDYNIVMRQIEEMPKPAYKWLNDLKLEVWARHTFDPRVKSNHI----TSNMVESFN 218
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BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: A0A6H5KPK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPK8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.140e-8
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  364 IFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIG 561
            ++EAAR  ++      +DK+  L PA+ + I   PR  WA YA R N + DQVTSNMSE++N+MIG
Sbjct:    1 MYEAARATDKATCEANIDKIAALNPAAGEYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMIG 66
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BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: A0A6H5JN60_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN60_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.030e-6
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  364 IFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIG 561
            ++EAAR  ++      +DK+  L PA+   I   PR  WA YA R N + DQVTSNMSE++N+M+G
Sbjct:    1 MYEAARATDKATCEANIDKIAALNPAAGKYIRLQPRHEWAMYATRGNVVQDQVTSNMSETANNMMG 66
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BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: UPI0019D51A80 (uncharacterized protein LOC120686792 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D51A80)

HSP 1 Score: 56.6 bits (135), Expect = 4.530e-6
Identity = 45/147 (30.61%), Postives = 66/147 (44.90%), Query Frame = 1 
Query:    1 CYRGFVST--QVFCMDCCHLKGIWNGIMCLLTVKDADNKLVIVCIVVSAVENADVYDYTLLHAKKKTDMAGFVNHETATYFVDGHKGSVAGLPRGVPLSEGRRCLRHIVGNITTAV-GADCNKLIFEAAREPNEMLFNECMDKVKVL 432
            C RGF++    + C+D CHLK  + GIM  LT    D    I  I    VE   +  +       K D+ G  N    T   D  KG +  +    P S+ R C+RH+  N      G + N  ++  AR    + F++ M+K+KVL
Sbjct:  453 CKRGFLAACRSLICLDGCHLKTKYGGIM--LTAVGIDPNDCIYPIAYGVVEVECLESWRWFLQTLKEDL-GIQNTYPWTIMTDKQKGLIKAVAEVFPESKHRFCVRHLYSNFQQHFKGENLNNQLWACARSTTPLQFHKNMEKMKVL 596
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BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Match: A0A6H5KFP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.630e-6
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  364 IFEAAREPNEMLFNECMDKVKVLKPASYDKIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIG 561
            ++EAAR  ++      +DK+  L PA+   I    R  WA YA R N + DQVTSNMSE++N+M+G
Sbjct:    1 MYEAARATDKATCEANIDKIAALNPAAGKYIRLQTRHEWAMYATRGNVVQDQVTSNMSETANNMMG 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54437.12823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI0019D59E7C3.960e-1028.83uncharacterized protein LOC120677791 isoform X1 n=... [more]
UPI000989F06A2.580e-931.29uncharacterized protein LOC109758763 n=1 Tax=Aegil... [more]
A0A6H5JA84_9PHAE6.580e-954.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001035699E2.080e-828.81uncharacterized protein LOC114268089 n=1 Tax=Camel... [more]
A0A6H5KPK8_9PHAE5.140e-846.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN60_9PHAE1.030e-645.45SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
UPI0019D51A804.530e-630.61uncharacterized protein LOC120686792 n=1 Tax=Panic... [more]
A0A6H5KFP9_9PHAE5.630e-643.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54437contigH-elongata_contig54437:360..1334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.1
Seed ortholog evalue3.9e-11
Seed eggNOG ortholog161934.XP_010696204.1
KEGG koko:K17086
EggNOG OGs2CN5X@1,2QU1T@2759,37T40@33090,3GGBN@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.1166012-CDS-H-elongata_contig54437:359..7071622930887.1166012-CDS-H-elongata_contig54437:359..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54437 360..707 +
1691679612.076741-CDS-H-elongata_contig54437:359..7071691679612.076741-CDS-H-elongata_contig54437:359..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54437 360..707 +
1622930887.1356668-CDS-H-elongata_contig54437:1115..13341622930887.1356668-CDS-H-elongata_contig54437:1115..1334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54437 1116..1334 +
1691679612.0888522-CDS-H-elongata_contig54437:1115..13341691679612.0888522-CDS-H-elongata_contig54437:1115..1334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54437 1116..1334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54437.12823.1prot_H-elongata_contig54437.12823.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54437 360..1334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54437.12823.1

>prot_H-elongata_contig54437.12823.1 ID=prot_H-elongata_contig54437.12823.1|Name=mRNA_H-elongata_contig54437.12823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp
CYRGFVSTQVFCMDCCHLKGIWNGIMCLLTVKDADNKLVIVCIVVSAVEN
ADVYDYTLLHAKKKTDMAGFVNHETATYFVDGHKGSVAGLPRGVPLSEGR
RCLRHIVGNITTAVGADCNKLIFEAAREPNEMLFNECMDKVKVLKPASYD
KIMALPRSSWANYACRSNHIWDQVTSNMSESSNSMIGNV
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mRNA from alignment at H-elongata_contig54437:360..1334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54437.12823.1 ID=mRNA_H-elongata_contig54437.12823.1|Name=mRNA_H-elongata_contig54437.12823.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig54437:360..1334+ (Himanthalia elongata Himel1 dioecious)
TGCTACCGTGGCTTTGTATCTACCCAGGTCTTCTGCATGGACTGCTGCCA
CCTCAAGGGAATATGGAACGGTATTATGTGCCTGTTGACGGTGAAAGACG
CCGACAACAAGCTCGTTATTGTCTGCATCGTTGTGTCAGCCGTGGAAAAT
GCTGATGTGTACGACTACACCCTTCTACACGCCAAGAAAAAAACGGACAT
GGCGGGGTTTGTAAACCACGAGACAGCCACGTACTTCGTCGACGGTCACA
AGGGCTCGGTGGCAGGCCTTCCGCGGGGGGTCCCGCTCTCAGAGGGAAGG
AGGTGCCTGAGGCATATTGTCGGCAACATCACCACTGCCGTCGGCGCGGT
GAGTGATTGTTAGTCTGGTGCATGGTATTAATGCCTGAATTTTTTCGGAG
GGGGGAGGGGGGAGATTGCAGTGTTTTCCAGAGGCTTGCAGTGTCTGGTT
CACACGCTTAAAGCACGTCCCTGTTTTTCGGCCACGCTCGACGTTCCTTT
GTTTCCTTTTTTTCGGTGTTGGACCTCGGCTATTTGTCGGTTCCTTTTAT
TGTGTTTGCGTCCTTGGTATTTTCTTTCGTTGATTTCATTCTAATATTTT
TGTTGGGTTCTACCCATCTTGTTGACCGCGGCTGAGTTCGGAGTGGATCA
TTGTAAGTGAAATGAACAAGGGCCAATAAACAACAAACACGCATGAGCAA
CTTGTAGGCGGCGAGAGCATGAAGTTCTGATCCCACAACTCCCCTCCTTT
TCCTAGGACTGCAACAAACTAATATTTGAGGCCGCGAGGGAGCCCAATGA
GATGCTATTCAACGAATGCATGGACAAGGTCAAGGTTCTGAAGCCTGCAA
GCTACGACAAGATCATGGCCCTCCCGCGATCGTCGTGGGCCAACTACGCG
TGCCGCTCCAACCACATCTGGGACCAAGTTACGAGCAACATGTCTGAGAG
CTCCAACAGCATGATTGGAAATGTA
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Coding sequence (CDS) from alignment at H-elongata_contig54437:360..1334+

>mRNA_H-elongata_contig54437.12823.1 ID=mRNA_H-elongata_contig54437.12823.1|Name=mRNA_H-elongata_contig54437.12823.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig54437:360..1334+ (Himanthalia elongata Himel1 dioecious)
TGCTACCGTGGCTTTGTATCTACCCAGGTCTTCTGCATGGACTGCTGCCA
CCTCAAGGGAATATGGAACGGTATTATGTGCCTGTTGACGGTGAAAGACG
CCGACAACAAGCTCGTTATTGTCTGCATCGTTGTGTCAGCCGTGGAAAAT
GCTGATGTGTACGACTACACCCTTCTACACGCCAAGAAAAAAACGGACAT
GGCGGGGTTTGTAAACCACGAGACAGCCACGTACTTCGTCGACGGTCACA
AGGGCTCGGTGGCAGGCCTTCCGCGGGGGGTCCCGCTCTCAGAGGGAAGG
AGGTGCCTGAGGCATATTGTCGGCAACATCACCACTGCCGTCGGCGCGTG
CTACCGTGGCTTTGTATCTACCCAGGTCTTCTGCATGGACTGCTGCCACC
TCAAGGGAATATGGAACGGTATTATGTGCCTGTTGACGGTGAAAGACGCC
GACAACAAGCTCGTTATTGTCTGCATCGTTGTGTCAGCCGTGGAAAATGC
TGATGTGTACGACTACACCCTTCTACACGCCAAGAAAAAAACGGACATGG
CGGGGTTTGTAAACCACGAGACAGCCACGTACTTCGTCGACGGTCACAAG
GGCTCGGTGGCAGGCCTTCCGCGGGGGGTCCCGCTCTCAGAGGGAAGGAG
GTGCCTGAGGCATATTGTCGGCAACATCACCACTGCCGTCGGCGCGGACT
GCAACAAACTAATATTTGAGGCCGCGAGGGAGCCCAATGAGATGCTATTC
AACGAATGCATGGACAAGGTCAAGGTTCTGAAGCCTGCAAGCTACGACAA
GATCATGGCCCTCCCGCGATCGTCGTGGGCCAACTACGCGTGCCGCTCCA
ACCACATCTGGGACCAAGTTACGAGCAACATGTCTGAGAGCTCCAACAGC
ATGATTGGAAATGTAGACTGCAACAAACTAATATTTGAGGCCGCGAGGGA
GCCCAATGAGATGCTATTCAACGAATGCATGGACAAGGTCAAGGTTCTGA
AGCCTGCAAGCTACGACAAGATCATGGCCCTCCCGCGATCGTCGTGGGCC
AACTACGCGTGCCGCTCCAACCACATCTGGGACCAAGTTACGAGCAACAT
GTCTGAGAGCTCCAACAGCATGATTGGAAATGTA
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