mRNA_H-elongata_contig54366.12809.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: D8LJZ7_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ7_ECTSI) HSP 1 Score: 246 bits (628), Expect = 4.660e-72 Identity = 159/256 (62.11%), Postives = 181/256 (70.70%), Query Frame = 1
Query: 211 AVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTSEAIQQHDTLA-------------RE-----------FGVNDSAQAVARMGG-----GDLLAGAGVEP----LR----EEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDLVER 867
AV IP+TIRHYCVPL DGDFFSRL+ L +R+LQPRRPLIFVPP+ERVTAVVAHLRR G +G RAVALHEAMGF+SDED G VRG H SEAI+QHD L RE D + V GG G LLAG GV P LR + E G +LVTGE SARGLHFDDVDFVFLM+KPK+PDEYVHLAGRT XXXXXXXXXXXXXXXX RKLQ WS +LKV+ EPL+++++++R
Sbjct: 573 AVVIPDTIRHYCVPLGDGDFFSRLEGLTAAVRELQPRRPLIFVPPQERVTAVVAHLRRAGGAVGARAVALHEAMGFVSDEDFGVVRGRHFSEAIEQHDRLVAGQSLAGGGEGGGREPXXXXXXXXXXXXXADESGVVTGAGGSGSSSGHLLAG-GVGPGGMRLRNGDGDAEVGDVLVTGEGSARGLHFDDVDFVFLMQKPKSPDEYVHLAGRTGXXXXXXXXXXXXXXXXFRKLQGWSYSLKVNFEPLDILNVLKR 827
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A7S2Y0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0L3_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.070e-35 Identity = 104/284 (36.62%), Postives = 145/284 (51.06%), Query Frame = 1
Query: 16 KIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSD-----VGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIG-RRAVALHEAMGFISDEDTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLEL 849
++VACSAT+GR L REL + + GSD +G+G+ PE G T R V++P +I+H+ +P +++ L V I L+PR PL+F+P + +++ V+ L +G A ALH+AMGF S +T R S A+ D +A F + E+E LLV ED+ARGLHF++VD+VFL+ KPK PDEY+HLAGRT XXXXXXX +K++AW L V LE LEL
Sbjct: 449 QLVACSATVGRQLTRELCRLTGMMPRDLPVLRGSDADSLSLGDGDGEDPE-----------GGGAEKTLRYVNVPPSIKHFYIPTMKESLEEKMEELLVAITMLKPRAPLLFIPRDAKISGVIEELH----SVGLTEAQALHQAMGFGSGHETSNRRHEGKS-AMLSLDHIASLF-----------------------QKKSEDERPPLLVASEDTARGLHFNEVDYVFLLAKPKTPDEYLHLAGRTGXXXXXXXVVTVISFREVKKMKAWKKILGVELEELEL 693
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A0G4EJG7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJG7_VITBC) HSP 1 Score: 139 bits (350), Expect = 4.060e-34 Identity = 96/291 (32.99%), Postives = 144/291 (49.48%), Query Frame = 1
Query: 1 IRLLEKIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISD--EDTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDLVER 867
+R +++A SATIGRPLRRELA+++ DV +G ++ P EV + RAV +P+TI H+ +PL + ++++ L +R L+P RPLIF+ P V ++ H +T G + + LHEA+GF S + T +R + EA+ +H L F D +AV + + V+ + S LLV D ARGLHF+ VD VF++ +P+ PDEY HLAGRT R L AW L + + PL + E+
Sbjct: 197 LRQSVQLIAASATIGRPLRRELANMMG----------VRDVDKGGP------LLIRPFEVE---EYLHSRAVGVPDTIEHFFLPLTNNTLGAKVNGLVAALRTLKPSRPLIFLAPHHSVRSLT-HFLKTQGF--QDTMPLHEALGFHSGFKKKTRDLRVKTSQEALAKHQELKGRFKKQDGEEAVPDAALQERIDNTVVD---KNSSPPLLVASMDGARGLHFNQVDMVFVLGRPRTPDEYQHLAGRTGRQGAGGTAVIIGDSFEVRSLLAWRKMLGIDIRPLRVQGYEEK 462
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A7S4DBE5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE5_HETAK) HSP 1 Score: 130 bits (327), Expect = 3.720e-32 Identity = 100/282 (35.46%), Postives = 131/282 (46.45%), Query Frame = 1
Query: 16 KIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERA-VSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDL 858
++V SAT+GRPLRRELA +++ P + DV G E+ ++RA A+ GD A V IP I H + L+D RL+AL V + ++P+ P++FVP E+V VVA LR AVAL EAMGF + G I +D LA F E E LLV ED+ARGLHF+ D VFL++ P+ PDEY HLAGRT R L++W + L V LE L L
Sbjct: 16 QVVGASATVGRPLRRELARLLQ----HPADDDSDDVRAG-----EVLLLRA----ATAGDAGDGTARVEIPRNIEHRYLQLKDHGVEDRLNALMVAVLAMKPKAPIVFVPRGEKVGEVVAGLRAAGLP---EAVALAEAMGFTGEGR--GXXXXXXDHPIAAYDRLAARF-----------------------EAASGESRPPLLVAPEDAARGLHFEACDAVFLLRPPQGPDEYRHLAGRTGRRGRAGRVLSLCSFREGRGLRSWRAMLGVPLEEATLEGL 256
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A835ZA34_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA34_9STRA) HSP 1 Score: 132 bits (332), Expect = 5.450e-31 Identity = 103/297 (34.68%), Postives = 141/297 (47.47%), Query Frame = 1
Query: 16 KIVACSATIGRPLRRELAHIIRRSSTE--PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQP--RRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRG-------------------SHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLE 837
+++A SAT+GRPLRRELA + + P + + + + V + DLA RAV IP TI H + L DF ++ A +R L+P RRPLIF+P E V V LR + G + R LHEAMGF S DT +H ++A+ HD LA + + A G G+ GVE + +LV DSARGLHF+ VD V ++ + + PDEYVHL+GRT XXXXXX + ++ W + LK LE
Sbjct: 564 QVIASSATVGRPLRRELAQALGLEDFKDGPAVVRANAIAPPRSKTSTVTVEEDDADGDVPADLAHSRAVMIPATIAHRYIALYREDFEEKIAAAVTAVRALRPPPRRPLIFIPASESVNRVALRLRSS-GLVNARP--LHEAMGFASAVDTDAAXXXXXXXXXXXXTEDDAPSGFAHATQALAAHDALAALYAETEGA------GEGE----GGVEHAQ------VLVASADSARGLHFEGVDLVVILGRARGPDEYVHLSGRTGXXXXXXTVVSVVTYKEAKAMKGWEAQLKFRLE 841
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: B8BXD5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXD5_THAPS) HSP 1 Score: 103 bits (258), Expect = 3.210e-21 Identity = 98/284 (34.51%), Postives = 145/284 (51.06%), Query Frame = 1
Query: 16 KIVACSATIGRPLRRELAHIIRRSSTE-PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTS--EAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDL 858
+++A SAT+GRPLRREL+ ++ S+E P T G D +DR + A ++ ++ D RAV IP+T+R+Y +P+ S L + A + L L E V+ L R C + +H A+G + G+R S +A++ D R + V +GG A + +++G LLVT ED+ RGLH D +D V ++ +P +PDEY H+AGRTXXXXXXXXXXXXX L +WS L V PL+ ++
Sbjct: 538 QVIAASATVGRPLRRELSRVLGLHSSECPETLRGDD---DSDR------LEAKIKSSNEDDKHIGRAVKIPDTVRNYVLPVDGSTTGSLLTSAAFASKSL-----LNTQDQTESSKKVLVVLTRNCD------IKVHNALGALRHF---GIRPEPQSLLDALEA-DGTDRLMEAHRRVSGVVGVGGSKKRA-------KNDDNGYLLVTHEDNVRGLHLDGLDAVVVVGRPGSPDEYTHIAGRTXXXXXXXXXXXXXSFEQAAALASWSKMLGVDFLPLDETEV 790
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A7S3QIU8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QIU8_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.770e-20 Identity = 87/285 (30.53%), Postives = 131/285 (45.96%), Query Frame = 1
Query: 16 KIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISD--------EDTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLE 846
+IVA SAT+GRPLRRELA ++ G D P RV+R V D T R +S+P++++HY +P DG L A K+ P P + + + ++CG + L +A+G + E G + G T + + + ++ G+ + A VA +E G LLVTGE++ RG+H D +D V ++ +PK PDEY+H+AGR XXXXXXXX L +W L + EP++
Sbjct: 398 QIVAASATVGRPLRRELARVL---------------GLTPDECP--RVVRPSGTV----DDPTTRPISVPKSLKHYALPC-DGTTSGSLLTAAAFATKVLP------TPASGKGRKTLFVITKSCG------INLRDAIGALKHFNVQPQPKELLGALSGDGTDQLMNNYRRVSGSVGLGERAANVAF----------------DENEGYLLVTGEETVRGIHLDGLDTVVVVGRPKGPDEYIHIAGRAXXXXXXXXVINVLSYEQSNSLASWEGMLGISFEPVD 632
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A1Z5JEC7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEC7_FISSO) HSP 1 Score: 95.5 bits (236), Expect = 2.220e-18 Identity = 78/279 (27.96%), Postives = 115/279 (41.22%), Query Frame = 1
Query: 16 KIVACSATIGRPLRRELAHIIRRSSTE--PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTSEAIQQH-DTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPL 843
+IVA SAT+GRPLRRELA ++ E P+ G G+ D AT RAV+IP+++ +Y VP L A I+ L TAV ++ R + L + G + G ++ Q DTL + G + + + G D + + + + SG +LVTGED+ RGLH D +D+V ++ +P PDEY H+AGRT L +WS L V +
Sbjct: 382 QIVAASATVGRPLRRELARVLGLPPQECPPVICAGDGTGDAGQ------------------DAATTRAVTIPDSVTNYVVPTAGSSPGQVLTAAYQVIQSL---------------TAVKSN--------ARILLVLSKGFGMNTQNSIGALKHFGCQPEPQNLLDTLEAD-GTDHMIELYREVSGADGVGQSRRQDDKSASSGYVLVTGEDTVRGLHLDGLDYVLVLGRPNGPDEYTHIAGRTGRAGTPGKVFSIMSESDSASLVSWSRMLGVEFHTI 618
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: K0RKD7_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RKD7_THAOC) HSP 1 Score: 93.6 bits (231), Expect = 1.110e-17 Identity = 83/284 (29.23%), Postives = 130/284 (45.77%), Query Frame = 1
Query: 16 KIVACSATIGRPLRRELAHIIRRSSTE-PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRK-LQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTSEA-IQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDL 858
+++A SAT+GRPLRREL+ ++ S+E P T G D + + R +++ + +G RAV IP T+R+Y +P+ S L + A + LQP + +++V V L R C + LH A+G + G+R S + + D R + V +GG + +E G LLVT ED+ RGLH D +D V ++ +P +PDEY H+AGRT L +W+ L V P++ D+
Sbjct: 543 QVIAASATVGRPLRRELSRVLGLHSSECPETIRGDD--DTSKLRDKIKS-----DEKHVG-----RAVKIPSTVRNYVLPVDGSTAGSLLTSAAFATKSILQPAKGESC--SQKKVLVV---LTRNCD------IKLHNALGALQHF---GIRPRPQSLLDVLEADGADRLVEAHRKVSRVEGVGG--------KQYSNDEGEGYLLVTHEDNVRGLHLDRLDAVVVVGRPGSPDEYTHIAGRTGRAGRKGSVLNIVSFEQAAALASWTKMLGVDFMPIDESDI 792
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A7S1GIE5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIE5_CYCTE) HSP 1 Score: 85.9 bits (211), Expect = 4.170e-15 Identity = 76/288 (26.39%), Postives = 124/288 (43.06%), Query Frame = 1
Query: 16 KIVACSATIGRPLRRELAHIIRRSSTE-PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAV----TIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDT--GGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDL 858
+I+A SAT+GRPL+REL ++ + + P G E E+++ D RAV+IP T+++Y V DG+ S L I+ L ++P T ++ L R G + V + G + + + T I++H ++ G+ ++ + E +G LLVTGED+ RGLH D +D V + +P PDEY H+AGRT XXXXX L++W L+ +++ ++
Sbjct: 405 QIIAASATVGRPLKRELCRVLGLETEQCPQVIRGGKADEQ--------------EMSTEEDPQHRRAVTIPSTVQNY-VTTMDGEGSSSSGMLLTKACEVIKTLSQKKPS---------TKILLVLTRASGLKTQNTVGALKFFGCKPEPQSLLDALEADGTDRMIEKHRRVSGATGIGETGYFTHKQDD-------------EPSAGYLLVTGEDTVRGLHLDGLDVVVAVGRPHGPDEYTHIAGRTGRXXXXXRVFTVVSKDNAAALKSWERILETDFNIVDVDEI 655 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54366.12809.1 >prot_H-elongata_contig54366.12809.1 ID=prot_H-elongata_contig54366.12809.1|Name=mRNA_H-elongata_contig54366.12809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp IRLLEKIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSDVGEGNDRRPEback to top mRNA from alignment at H-elongata_contig54366:1339..2208- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54366.12809.1 ID=mRNA_H-elongata_contig54366.12809.1|Name=mRNA_H-elongata_contig54366.12809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=870bp|location=Sequence derived from alignment at H-elongata_contig54366:1339..2208- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54366:1339..2208- >mRNA_H-elongata_contig54366.12809.1 ID=mRNA_H-elongata_contig54366.12809.1|Name=mRNA_H-elongata_contig54366.12809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig54366:1339..2208- (Himanthalia elongata Himel1 dioecious)back to top |