mRNA_H-elongata_contig54366.12809.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54366.12809.1
Unique NamemRNA_H-elongata_contig54366.12809.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: D8LJZ7_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ7_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 4.660e-72
Identity = 159/256 (62.11%), Postives = 181/256 (70.70%), Query Frame = 1
Query:  211 AVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTSEAIQQHDTLA-------------RE-----------FGVNDSAQAVARMGG-----GDLLAGAGVEP----LR----EEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDLVER 867
            AV IP+TIRHYCVPL DGDFFSRL+ L   +R+LQPRRPLIFVPP+ERVTAVVAHLRR  G +G RAVALHEAMGF+SDED G VRG H SEAI+QHD L              RE               D +  V   GG     G LLAG GV P    LR    + E G +LVTGE SARGLHFDDVDFVFLM+KPK+PDEYVHLAGRT XXXXXXXXXXXXXXXX RKLQ WS +LKV+ EPL+++++++R
Sbjct:  573 AVVIPDTIRHYCVPLGDGDFFSRLEGLTAAVRELQPRRPLIFVPPQERVTAVVAHLRRAGGAVGARAVALHEAMGFVSDEDFGVVRGRHFSEAIEQHDRLVAGQSLAGGGEGGGREPXXXXXXXXXXXXXADESGVVTGAGGSGSSSGHLLAG-GVGPGGMRLRNGDGDAEVGDVLVTGEGSARGLHFDDVDFVFLMQKPKSPDEYVHLAGRTGXXXXXXXXXXXXXXXXFRKLQGWSYSLKVNFEPLDILNVLKR 827          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A7S2Y0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0L3_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.070e-35
Identity = 104/284 (36.62%), Postives = 145/284 (51.06%), Query Frame = 1
Query:   16 KIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSD-----VGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIG-RRAVALHEAMGFISDEDTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLEL 849
            ++VACSAT+GR L REL  +      +     GSD     +G+G+   PE             G   T R V++P +I+H+ +P        +++ L V I  L+PR PL+F+P + +++ V+  L      +G   A ALH+AMGF S  +T   R    S A+   D +A  F                       +   E+E   LLV  ED+ARGLHF++VD+VFL+ KPK PDEY+HLAGRT XXXXXXX          +K++AW   L V LE LEL
Sbjct:  449 QLVACSATVGRQLTRELCRLTGMMPRDLPVLRGSDADSLSLGDGDGEDPE-----------GGGAEKTLRYVNVPPSIKHFYIPTMKESLEEKMEELLVAITMLKPRAPLLFIPRDAKISGVIEELH----SVGLTEAQALHQAMGFGSGHETSNRRHEGKS-AMLSLDHIASLF-----------------------QKKSEDERPPLLVASEDTARGLHFNEVDYVFLLAKPKTPDEYLHLAGRTGXXXXXXXVVTVISFREVKKMKAWKKILGVELEELEL 693          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A0G4EJG7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJG7_VITBC)

HSP 1 Score: 139 bits (350), Expect = 4.060e-34
Identity = 96/291 (32.99%), Postives = 144/291 (49.48%), Query Frame = 1
Query:    1 IRLLEKIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISD--EDTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDLVER 867
            +R   +++A SATIGRPLRRELA+++             DV +G        ++  P EV    +    RAV +P+TI H+ +PL +    ++++ L   +R L+P RPLIF+ P   V ++  H  +T G   +  + LHEA+GF S   + T  +R   + EA+ +H  L   F   D  +AV      + +    V+   +  S  LLV   D ARGLHF+ VD VF++ +P+ PDEY HLAGRT                  R L AW   L + + PL +    E+
Sbjct:  197 LRQSVQLIAASATIGRPLRRELANMMG----------VRDVDKGGP------LLIRPFEVE---EYLHSRAVGVPDTIEHFFLPLTNNTLGAKVNGLVAALRTLKPSRPLIFLAPHHSVRSLT-HFLKTQGF--QDTMPLHEALGFHSGFKKKTRDLRVKTSQEALAKHQELKGRFKKQDGEEAVPDAALQERIDNTVVD---KNSSPPLLVASMDGARGLHFNQVDMVFVLGRPRTPDEYQHLAGRTGRQGAGGTAVIIGDSFEVRSLLAWRKMLGIDIRPLRVQGYEEK 462          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A7S4DBE5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE5_HETAK)

HSP 1 Score: 130 bits (327), Expect = 3.720e-32
Identity = 100/282 (35.46%), Postives = 131/282 (46.45%), Query Frame = 1
Query:   16 KIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERA-VSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDL 858
            ++V  SAT+GRPLRRELA +++     P   +  DV  G     E+ ++RA    A+ GD     A V IP  I H  + L+D     RL+AL V +  ++P+ P++FVP  E+V  VVA LR         AVAL EAMGF  +    G         I  +D LA  F                       E    E    LLV  ED+ARGLHF+  D VFL++ P+ PDEY HLAGRT                  R L++W + L V LE   L  L
Sbjct:   16 QVVGASATVGRPLRRELARLLQ----HPADDDSDDVRAG-----EVLLLRA----ATAGDAGDGTARVEIPRNIEHRYLQLKDHGVEDRLNALMVAVLAMKPKAPIVFVPRGEKVGEVVAGLRAAGLP---EAVALAEAMGFTGEGR--GXXXXXXDHPIAAYDRLAARF-----------------------EAASGESRPPLLVAPEDAARGLHFEACDAVFLLRPPQGPDEYRHLAGRTGRRGRAGRVLSLCSFREGRGLRSWRAMLGVPLEEATLEGL 256          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A835ZA34_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA34_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.450e-31
Identity = 103/297 (34.68%), Postives = 141/297 (47.47%), Query Frame = 1
Query:   16 KIVACSATIGRPLRRELAHIIRRSSTE--PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQP--RRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRG-------------------SHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLE 837
            +++A SAT+GRPLRRELA  +     +  P     + +     +   + V     +     DLA  RAV IP TI H  + L   DF  ++ A    +R L+P  RRPLIF+P  E V  V   LR + G +  R   LHEAMGF S  DT                        +H ++A+  HD LA  +   + A      G G+     GVE  +      +LV   DSARGLHF+ VD V ++ + + PDEYVHL+GRT XXXXXX           + ++ W + LK  LE
Sbjct:  564 QVIASSATVGRPLRRELAQALGLEDFKDGPAVVRANAIAPPRSKTSTVTVEEDDADGDVPADLAHSRAVMIPATIAHRYIALYREDFEEKIAAAVTAVRALRPPPRRPLIFIPASESVNRVALRLRSS-GLVNARP--LHEAMGFASAVDTDAAXXXXXXXXXXXXTEDDAPSGFAHATQALAAHDALAALYAETEGA------GEGE----GGVEHAQ------VLVASADSARGLHFEGVDLVVILGRARGPDEYVHLSGRTGXXXXXXTVVSVVTYKEAKAMKGWEAQLKFRLE 841          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: B8BXD5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXD5_THAPS)

HSP 1 Score: 103 bits (258), Expect = 3.210e-21
Identity = 98/284 (34.51%), Postives = 145/284 (51.06%), Query Frame = 1
Query:   16 KIVACSATIGRPLRRELAHIIRRSSTE-PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTS--EAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDL 858
            +++A SAT+GRPLRREL+ ++   S+E P T  G D    +DR      + A ++ ++  D    RAV IP+T+R+Y +P+      S L + A   + L     L      E    V+  L R C       + +H A+G +      G+R    S  +A++  D   R    +     V  +GG    A       + +++G LLVT ED+ RGLH D +D V ++ +P +PDEY H+AGRTXXXXXXXXXXXXX       L +WS  L V   PL+  ++
Sbjct:  538 QVIAASATVGRPLRRELSRVLGLHSSECPETLRGDD---DSDR------LEAKIKSSNEDDKHIGRAVKIPDTVRNYVLPVDGSTTGSLLTSAAFASKSL-----LNTQDQTESSKKVLVVLTRNCD------IKVHNALGALRHF---GIRPEPQSLLDALEA-DGTDRLMEAHRRVSGVVGVGGSKKRA-------KNDDNGYLLVTHEDNVRGLHLDGLDAVVVVGRPGSPDEYTHIAGRTXXXXXXXXXXXXXSFEQAAALASWSKMLGVDFLPLDETEV 790          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A7S3QIU8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QIU8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.770e-20
Identity = 87/285 (30.53%), Postives = 131/285 (45.96%), Query Frame = 1
Query:   16 KIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISD--------EDTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLE 846
            +IVA SAT+GRPLRRELA ++               G   D  P  RV+R    V    D  T R +S+P++++HY +P  DG     L   A    K+ P       P   +    +  + ++CG      + L +A+G +          E  G + G  T + +  +  ++   G+ + A  VA                 +E  G LLVTGE++ RG+H D +D V ++ +PK PDEY+H+AGR XXXXXXXX            L +W   L +  EP++
Sbjct:  398 QIVAASATVGRPLRRELARVL---------------GLTPDECP--RVVRPSGTV----DDPTTRPISVPKSLKHYALPC-DGTTSGSLLTAAAFATKVLP------TPASGKGRKTLFVITKSCG------INLRDAIGALKHFNVQPQPKELLGALSGDGTDQLMNNYRRVSGSVGLGERAANVAF----------------DENEGYLLVTGEETVRGIHLDGLDTVVVVGRPKGPDEYIHIAGRAXXXXXXXXVINVLSYEQSNSLASWEGMLGISFEPVD 632          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A1Z5JEC7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEC7_FISSO)

HSP 1 Score: 95.5 bits (236), Expect = 2.220e-18
Identity = 78/279 (27.96%), Postives = 115/279 (41.22%), Query Frame = 1
Query:   16 KIVACSATIGRPLRRELAHIIRRSSTE--PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTSEAIQQH-DTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPL 843
            +IVA SAT+GRPLRRELA ++     E  P+   G   G+                     D AT RAV+IP+++ +Y VP         L A    I+ L               TAV ++         R  + L +  G  +    G ++        Q   DTL  + G +   +    + G D +  +  +  +   SG +LVTGED+ RGLH D +D+V ++ +P  PDEY H+AGRT                    L +WS  L V    +
Sbjct:  382 QIVAASATVGRPLRRELARVLGLPPQECPPVICAGDGTGDAGQ------------------DAATTRAVTIPDSVTNYVVPTAGSSPGQVLTAAYQVIQSL---------------TAVKSN--------ARILLVLSKGFGMNTQNSIGALKHFGCQPEPQNLLDTLEAD-GTDHMIELYREVSGADGVGQSRRQDDKSASSGYVLVTGEDTVRGLHLDGLDYVLVLGRPNGPDEYTHIAGRTGRAGTPGKVFSIMSESDSASLVSWSRMLGVEFHTI 618          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: K0RKD7_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RKD7_THAOC)

HSP 1 Score: 93.6 bits (231), Expect = 1.110e-17
Identity = 83/284 (29.23%), Postives = 130/284 (45.77%), Query Frame = 1
Query:   16 KIVACSATIGRPLRRELAHIIRRSSTE-PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVTIRK-LQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDTGGVRGSHTSEA-IQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDL 858
            +++A SAT+GRPLRREL+ ++   S+E P T  G D  + +  R +++      +   +G     RAV IP T+R+Y +P+      S L + A   +  LQP +       +++V  V   L R C       + LH A+G +      G+R    S   + + D   R    +     V  +GG         +   +E  G LLVT ED+ RGLH D +D V ++ +P +PDEY H+AGRT                    L +W+  L V   P++  D+
Sbjct:  543 QVIAASATVGRPLRRELSRVLGLHSSECPETIRGDD--DTSKLRDKIKS-----DEKHVG-----RAVKIPSTVRNYVLPVDGSTAGSLLTSAAFATKSILQPAKGESC--SQKKVLVV---LTRNCD------IKLHNALGALQHF---GIRPRPQSLLDVLEADGADRLVEAHRKVSRVEGVGG--------KQYSNDEGEGYLLVTHEDNVRGLHLDRLDAVVVVGRPGSPDEYTHIAGRTGRAGRKGSVLNIVSFEQAAALASWTKMLGVDFMPIDESDI 792          
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Match: A0A7S1GIE5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIE5_CYCTE)

HSP 1 Score: 85.9 bits (211), Expect = 4.170e-15
Identity = 76/288 (26.39%), Postives = 124/288 (43.06%), Query Frame = 1
Query:   16 KIVACSATIGRPLRRELAHIIRRSSTE-PLTAEGSDVGEGNDRRPELRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAV----TIRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDEDT--GGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPLREEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTXXXXXXXXXXXXXXXXXXRKLQAWSSTLKVHLEPLELVDL 858
            +I+A SAT+GRPL+REL  ++   + + P    G    E               E+++  D    RAV+IP T+++Y V   DG+  S    L       I+ L  ++P          T ++  L R  G   +  V   +  G   +  +    +    T   I++H  ++   G+ ++     +                E  +G LLVTGED+ RGLH D +D V  + +P  PDEY H+AGRT  XXXXX             L++W   L+     +++ ++
Sbjct:  405 QIIAASATVGRPLKRELCRVLGLETEQCPQVIRGGKADEQ--------------EMSTEEDPQHRRAVTIPSTVQNY-VTTMDGEGSSSSGMLLTKACEVIKTLSQKKPS---------TKILLVLTRASGLKTQNTVGALKFFGCKPEPQSLLDALEADGTDRMIEKHRRVSGATGIGETGYFTHKQDD-------------EPSAGYLLVTGEDTVRGLHLDGLDVVVAVGRPHGPDEYTHIAGRTGRXXXXXRVFTVVSKDNAAALKSWERILETDFNIVDVDEI 655          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54366.12809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJZ7_ECTSI4.660e-7262.11DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S2Y0L3_9STRA1.070e-3536.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4EJG7_VITBC4.060e-3432.99Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S4DBE5_HETAK3.720e-3235.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZA34_9STRA5.450e-3134.68P-loop containing nucleoside triphosphate hydrolas... [more]
B8BXD5_THAPS3.210e-2134.51Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3QIU8_9STRA1.770e-2030.53Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5JEC7_FISSO2.220e-1827.96Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
K0RKD7_THAOC1.110e-1729.23Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
A0A7S1GIE5_CYCTE4.170e-1526.39Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54366contigH-elongata_contig54366:1339..2208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue6.8e-63
Seed eggNOG ortholog2880.D8LJZ7
KEGG koko:K09250,ko:K11594,ko:K20096
KEGG Pathwayko04622,ko05161,ko05203,map04622,map05161,map05203
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0335@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03009,ko03019,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-06_007600.1
Exons1
Model size870
Cds size870
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930885.4072564-CDS-H-elongata_contig54366:1338..22081622930885.4072564-CDS-H-elongata_contig54366:1338..2208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54366 1339..2208 -
1691679611.4854927-CDS-H-elongata_contig54366:1338..22081691679611.4854927-CDS-H-elongata_contig54366:1338..2208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54366 1339..2208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54366.12809.1prot_H-elongata_contig54366.12809.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54366 1339..2208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54366.12809.1

>prot_H-elongata_contig54366.12809.1 ID=prot_H-elongata_contig54366.12809.1|Name=mRNA_H-elongata_contig54366.12809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=290bp
IRLLEKIVACSATIGRPLRRELAHIIRRSSTEPLTAEGSDVGEGNDRRPE
LRVIRAPLEVASIGDLATERAVSIPETIRHYCVPLRDGDFFSRLDALAVT
IRKLQPRRPLIFVPPEERVTAVVAHLRRTCGEIGRRAVALHEAMGFISDE
DTGGVRGSHTSEAIQQHDTLAREFGVNDSAQAVARMGGGDLLAGAGVEPL
REEESGALLVTGEDSARGLHFDDVDFVFLMKKPKNPDEYVHLAGRTGRQG
KTGSVVSLVSFEEFRKLQAWSSTLKVHLEPLELVDLVER*
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mRNA from alignment at H-elongata_contig54366:1339..2208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54366.12809.1 ID=mRNA_H-elongata_contig54366.12809.1|Name=mRNA_H-elongata_contig54366.12809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=870bp|location=Sequence derived from alignment at H-elongata_contig54366:1339..2208- (Himanthalia elongata Himel1 dioecious)
ATTCGTTTGCTCGAGAAGATCGTCGCCTGTTCGGCAACAATCGGGCGGCC CCTCCGCCGCGAACTGGCGCACATCATTCGCCGGTCTTCTACGGAACCGT TGACCGCGGAGGGGAGCGACGTCGGTGAGGGAAATGATCGGCGTCCTGAG CTCAGAGTCATTCGCGCCCCACTCGAAGTAGCCTCCATCGGGGACCTCGC CACGGAAAGGGCGGTATCTATTCCGGAAACCATCCGGCACTACTGTGTAC CTCTTCGGGACGGGGATTTCTTCTCGCGCTTGGACGCACTGGCGGTGACC ATTCGAAAGCTGCAACCGCGGCGGCCTCTGATCTTCGTCCCGCCAGAGGA GCGGGTGACGGCGGTGGTAGCACACCTGCGGCGCACCTGCGGCGAGATCG GGCGACGCGCGGTGGCCCTCCACGAGGCAATGGGTTTCATTTCTGACGAA GATACAGGCGGCGTGCGAGGGTCGCACACCTCGGAAGCGATCCAGCAGCA CGACACCCTGGCGCGGGAGTTCGGAGTAAATGATAGCGCACAGGCTGTCG CGCGTATGGGTGGTGGGGATTTGTTGGCGGGGGCGGGGGTAGAGCCGCTG CGCGAAGAAGAGTCGGGGGCACTCCTCGTCACCGGGGAAGACTCGGCGCG AGGGCTGCACTTCGACGACGTCGACTTCGTGTTCCTCATGAAGAAGCCCA AGAATCCCGACGAGTATGTTCACCTGGCGGGACGTACCGGACGGCAGGGG AAGACGGGTAGCGTCGTCTCACTCGTCTCGTTCGAGGAGTTCCGAAAACT GCAGGCGTGGTCGTCAACATTAAAGGTGCACTTGGAGCCCTTGGAGCTCG TGGACTTAGTGGAGCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig54366:1339..2208-

>mRNA_H-elongata_contig54366.12809.1 ID=mRNA_H-elongata_contig54366.12809.1|Name=mRNA_H-elongata_contig54366.12809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1740bp|location=Sequence derived from alignment at H-elongata_contig54366:1339..2208- (Himanthalia elongata Himel1 dioecious)
ATTCGTTTGCTCGAGAAGATCGTCGCCTGTTCGGCAACAATCGGGCGGCC
CCTCCGCCGCGAACTGGCGCACATCATTCGCCGGTCTTCTACGGAACCGT
TGACCGCGGAGGGGAGCGACGTCGGTGAGGGAAATGATCGGCGTCCTGAG
CTCAGAGTCATTCGCGCCCCACTCGAAGTAGCCTCCATCGGGGACCTCGC
CACGGAAAGGGCGGTATCTATTCCGGAAACCATCCGGCACTACTGTGTAC
CTCTTCGGGACGGGGATTTCTTCTCGCGCTTGGACGCACTGGCGGTGACC
ATTCGAAAGCTGCAACCGCGGCGGCCTCTGATCTTCGTCCCGCCAGAGGA
GCGGGTGACGGCGGTGGTAGCACACCTGCGGCGCACCTGCGGCGAGATCG
GGCGACGCGCGGTGGCCCTCCACGAGGCAATGGGTTTCATTTCTGACGAA
GATACAGGCGGCGTGCGAGGGTCGCACACCTCGGAAGCGATCCAGCAGCA
CGACACCCTGGCGCGGGAGTTCGGAGTAAATGATAGCGCACAGGCTGTCG
CGCGTATGGGTGGTGGGGATTTGTTGGCGGGGGCGGGGGTAGAGCCGCTG
CGCGAAGAAGAGTCGGGGGCACTCCTCGTCACCGGGGAAGACTCGGCGCG
AGGGCTGCACTTCGACGACGTCGACTTCGTGTTCCTCATGAAGAAGCCCA
AGAATCCCGACGAGTATGTTCACCTGGCGGGACGTACCGGACGGCAGGGG
AAGACGGGTAGCGTCGTCTCACTCGTCTCGTTCGAGGAGTTCCGAAAACT
GCAGGCGTGGTCGTCAACATTAAAGGTGCACTTGGAGCCCTTGGAGCTCG
TGGACTTAGTGGAGCGATGAATTCGTTTGCTCGAGAAGATCGTCGCCTGT
TCGGCAACAATCGGGCGGCCCCTCCGCCGCGAACTGGCGCACATCATTCG
CCGGTCTTCTACGGAACCGTTGACCGCGGAGGGGAGCGACGTCGGTGAGG
GAAATGATCGGCGTCCTGAGCTCAGAGTCATTCGCGCCCCACTCGAAGTA
GCCTCCATCGGGGACCTCGCCACGGAAAGGGCGGTATCTATTCCGGAAAC
CATCCGGCACTACTGTGTACCTCTTCGGGACGGGGATTTCTTCTCGCGCT
TGGACGCACTGGCGGTGACCATTCGAAAGCTGCAACCGCGGCGGCCTCTG
ATCTTCGTCCCGCCAGAGGAGCGGGTGACGGCGGTGGTAGCACACCTGCG
GCGCACCTGCGGCGAGATCGGGCGACGCGCGGTGGCCCTCCACGAGGCAA
TGGGTTTCATTTCTGACGAAGATACAGGCGGCGTGCGAGGGTCGCACACC
TCGGAAGCGATCCAGCAGCACGACACCCTGGCGCGGGAGTTCGGAGTAAA
TGATAGCGCACAGGCTGTCGCGCGTATGGGTGGTGGGGATTTGTTGGCGG
GGGCGGGGGTAGAGCCGCTGCGCGAAGAAGAGTCGGGGGCACTCCTCGTC
ACCGGGGAAGACTCGGCGCGAGGGCTGCACTTCGACGACGTCGACTTCGT
GTTCCTCATGAAGAAGCCCAAGAATCCCGACGAGTATGTTCACCTGGCGG
GACGTACCGGACGGCAGGGGAAGACGGGTAGCGTCGTCTCACTCGTCTCG
TTCGAGGAGTTCCGAAAACTGCAGGCGTGGTCGTCAACATTAAAGGTGCA
CTTGGAGCCCTTGGAGCTCGTGGACTTAGTGGAGCGATGA
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