mRNA_H-elongata_contig54251.12795.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE) HSP 1 Score: 187 bits (474), Expect = 6.980e-50 Identity = 108/253 (42.69%), Postives = 147/253 (58.10%), Query Frame = 1
Query: 1 PLKGLYGEAFIRKNLPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYS-----------KPN---------DLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFK 699
P K LY ++ I+ L W+ G GL N G+TC++NATLQCL++LPPLAQH L Y +P +++ + K+VH+ G+ + AI P L++NL+++G Q+R +EDAHEFL LL+ M C L R K S SR+ ETT INRIFGGYLRSRL C CG D ++ F+DLS+ L++ V ++E AL+ FV+ E L N W C GC+ V+AEK LSVFK
Sbjct: 243 PGKELYLDSKIKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGHGPQGIASRGPRPMGGFREFTKVEILAAMEQHTKQVHQ-GQFT-GLGAISPKVLVQNLRMIGRQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGVK-------SSAPSRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIEVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 486
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI) HSP 1 Score: 176 bits (447), Expect = 1.160e-46 Identity = 96/257 (37.35%), Postives = 142/257 (55.25%), Query Frame = 1
Query: 13 LYGEAFIRKNLPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSK--------------------PNDLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTT--------VEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFK 699
LY E+ +R NL W+ G GL N G+TCY+N+ LQCL+++PPLAQH L +YS+ +D++ + + ++H+ + + AIRP NL+ +G ++R +EDAHEFL L++ MAG L R +R+ ETT I+R+FGGYLRS+L C CGF D ++ F+DL++ + K ++ ++ AL+ F + E L N W C GC LVEAEK+LSVFK
Sbjct: 114 LYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGSYSQGSHATCSESPFSFNGSTDFCEDDILGAMQKLVGQIHQTKSGSAEQQAIRPRTFSDNLRKIGEKFRRGRQEDAHEFLRHLVDKMAGSYLERRGVD-------PFAPNRLAETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 363
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A835YLY7_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA) HSP 1 Score: 162 bits (409), Expect = 3.510e-44 Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 1
Query: 43 LPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVLIIGNTIKEVHRRGEINLKMD-----------AIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSV 693
L W+ G GL N G+TC++NATLQCL + PPL QH L Y P + H R ++NL + AI P ++ N++ +G Q+R +EDAHEFL +L++SMA L R K + R+ ETT+INR+FGGYLR+++ C C + + YE ++DLSL + ++++E ALK F + E L SNRW C GC+ V A K L++
Sbjct: 1 LEWRELSKVGPGLQNLGNTCFLNATLQCLLYCPPLVQHLLNHKYGAP-------AAAQQAHHGRAQLNLVSNTAAVARSSAYSAISPKTIVANIRTIGKQFRPGRQEDAHEFLRKLVDSMAEAILRRHGVKANA-------PHRLDETTAINRVFGGYLRNQVQCTKCRYCSNTYELYMDLSLDMVGNISSLEDALKRFQAVETLDSSNRWRCGGCKQKVCARKQLTI 214
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: K8ZBR0_NANGC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC) HSP 1 Score: 158 bits (399), Expect = 4.900e-41 Identity = 98/263 (37.26%), Postives = 141/263 (53.61%), Query Frame = 1
Query: 1 PLKGLYGEAFIRKNLPWQIEVAR-GRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVL--------------------IIGNTIKEVHR--------RGEINLKMDA----IRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLS 690
P KG++ E+ I + W I V R G GL+N G+TC++NATLQCLA+LPPLAQ+FL + + VL ++ + I +H RG+ + + I P ++ NLK + +R +EDAHEFL LL+++ CL ++ K S R+ ETT ++RIFGGYLRS++ C CG + Y++FLDLSL++ V +E AL F + E L +NRW C C LV A+K LS
Sbjct: 112 PEKGIFPESKIHPLMTW-IRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRGGGQARGGWLGLVRDLIANMHTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVK-------SNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: W7TEV7_9STRA (Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA) HSP 1 Score: 158 bits (399), Expect = 6.740e-40 Identity = 98/263 (37.26%), Postives = 141/263 (53.61%), Query Frame = 1
Query: 1 PLKGLYGEAFIRKNLPWQIEVAR-GRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVL--------------------IIGNTIKEVHR--------RGEINLKMDA----IRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLS 690
P KG++ E+ I + W I V R G GL+N G+TC++NATLQCLA+LPPLAQ+FL + + VL ++ + I +H RG+ + + I P ++ NLK + +R +EDAHEFL LL+++ CL ++ K S R+ ETT ++RIFGGYLRS++ C CG + Y++FLDLSL++ V +E AL F + E L +NRW C C LV A+K LS
Sbjct: 112 PEKGIFPESKIHPLMTW-IRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRGGGQARGGWLGLVRDLIANMHTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVK-------SNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A7S1U5Y3_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA) HSP 1 Score: 153 bits (386), Expect = 9.460e-40 Identity = 84/221 (38.01%), Postives = 133/221 (60.18%), Query Frame = 1
Query: 43 LPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHF--LEENYSKPNDLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFK 699
L W+ G GL N G+TC++N+T+QCLA LPPL Q+ + E+ + NDL+ +IG +++ + +A P ++ NL+ + ++ +EDAHE+L QLL+ + CL+RS K + R ET++++R+FGGYLRS+L C C + + Y++ LDLSL++ V+++ AL+AF +AE L NRW C GC LV A K ++VF+
Sbjct: 50 LRWERVRGPGPGLSNLGNTCFLNSTMQCLAALPPLVQYLESVGEDGGR-NDLLGLIGGFMRKFG-----GTRSNAFAPKAIVGNLRRISRNFKLGRQEDAHEYLRQLLDGLHKSCLMRSGLKPTAC-------GRREETSAMHRLFGGYLRSQLKCNDCAYCSNTYDACLDLSLEIHGKVSSLPSALEAFQAAEILDKDNRWKCGGCNKLVRARKQITVFR 257
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A4D9CS17_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA) HSP 1 Score: 155 bits (393), Expect = 4.190e-39 Identity = 100/265 (37.74%), Postives = 138/265 (52.08%), Query Frame = 1
Query: 1 PLKGLYGEAFIRKNLPWQIEVAR-GRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVLIIGNTIKEVHRRGE------INLKMDAIR----------------------------PNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLS 690
P KG++ E+ I + W I V R G GL+N G+TC++NATLQCLA+LPPLAQ+FL + + VL G + HR G + L D I P ++ NLK + +R +EDAHEFL LL+++ CL ++ K S R+ ETT ++RIFGGYLRS++ C CG + Y++FLDLSL++ V +E AL F + E L +NRW C C LV A+K LS
Sbjct: 112 PEKGIFPESKIHPLMTW-IRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEESVPSVLSPG--AGQGHRGGGQARGGWLGLVRDLIANMHTGXXXXXXXXXXXLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQNGCLQAARVK-------SNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWKCPACSQLVCAQKRLS 366
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A7K6TFQ1_CALNI (UBP42 hydrolase (Fragment) n=1 Tax=Caloenas nicobarica TaxID=187106 RepID=A0A7K6TFQ1_CALNI) HSP 1 Score: 139 bits (350), Expect = 9.020e-36 Identity = 77/215 (35.81%), Postives = 118/215 (54.88%), Query Frame = 1
Query: 49 WQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSV 693
WQ + G GL+N G+TC++N+ LQCL + PPLA + L +S+ EVH ++ AI P ++ L+ +G Q++ +EDAHEF +++M CL R + S + +T I+++FGG LRSR+TC SC D YE+F+D+ L + K ++V GAL+ FV E+L G N + C C+ LV A K L++
Sbjct: 11 WQQTRSVGGGLYNLGNTCFLNSVLQCLTYTPPLANYLLSRQHSQSCAEEGFCMMCTMEVHTEEVLSCSGSAIAPTAVVSELQRIGEQFQLGAQEDAHEFFGCAVDAMQRACLSRRSDRDTSSQS----------STVIDQVFGGLLRSRVTCLSCKAVSDTYEAFVDIPLDI-KAASSVTGALEDFVRPEHLDGENSYKCSKCEQLVSASKRLTI 214
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A7K9XY79_9GRUI (UBP42 hydrolase (Fragment) n=1 Tax=Psophia crepitans TaxID=54359 RepID=A0A7K9XY79_9GRUI) HSP 1 Score: 136 bits (342), Expect = 3.880e-35 Identity = 82/223 (36.77%), Postives = 123/223 (55.16%), Query Frame = 1
Query: 43 LPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFL--EENYSKPND----LVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSV 693
+ WQ + A G GL N G+ CY+N+ LQCL + PPLA + L E S P + ++ G+ I+ + G D + P ++R+L +G + ++EDAH+FL +E+M CL + L S + TT +++IFGG+LRSR+TC SC D YE+FLD+SL++ T ++V AL+ FV E L G N + C C +V A K L+V
Sbjct: 18 MEWQQQQAAGAGLCNPGNMCYLNSVLQCLTYTPPLANYLLSGEHRQSCPQQGFCMMCIMEGHVIRALCSSGS-----DLV-PLTVIRSLNRIGEHFELGMQEDAHDFLRCTVEAMQSACL----SGCSDLDTSSQS------TTIVHQIFGGFLRSRVTCLSCSAVSDSYETFLDVSLEIEAT-SSVTAALEDFVKPEQLDGENCFRCHSCDKMVAASKRLTV 223
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: UPI001A93CD70 (ubiquitin carboxyl-terminal hydrolase 42-like n=1 Tax=Hirundo rustica TaxID=43150 RepID=UPI001A93CD70) HSP 1 Score: 139 bits (351), Expect = 4.790e-35 Identity = 81/221 (36.65%), Postives = 119/221 (53.85%), Query Frame = 1
Query: 49 WQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCL-VRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFKVCK 708
WQ + G GLFN G+TC++NA LQCL + PPLA + L +S+ + E H ++ AIRP+ +L+ + +G ++ EEDAH+FL +++M CL S L S TT +++IFGG LRSR+TC SC D YE FLD+ L + + ++V AL+ FV+ E+L G N + C C+ V A K +V +V K
Sbjct: 18 WQQRQSAGAGLFNAGNTCFLNAVLQCLTYTPPLANYLLSREHSQACHQKGFCMMCVMEAHVNRVLHSPASAIRPSGVLKVFRRIGEHFQRGREEDAHDFLCCTVDAMQRACLGASSDLDLSSQ-----------YTTIVHQIFGGSLRSRVTCFSCNAISDSYEVFLDIPLDI-RAASSVTAALEDFVTPEHLDGENSFKCSKCKKNVAASKRFTVHRVPK 226 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54251.12795.1 >prot_H-elongata_contig54251.12795.1 ID=prot_H-elongata_contig54251.12795.1|Name=mRNA_H-elongata_contig54251.12795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp MDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKback to top mRNA from alignment at H-elongata_contig54251:1027..3249- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54251.12795.1 ID=mRNA_H-elongata_contig54251.12795.1|Name=mRNA_H-elongata_contig54251.12795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2223bp|location=Sequence derived from alignment at H-elongata_contig54251:1027..3249- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54251:1027..3249- >mRNA_H-elongata_contig54251.12795.1 ID=mRNA_H-elongata_contig54251.12795.1|Name=mRNA_H-elongata_contig54251.12795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig54251:1027..3249- (Himanthalia elongata Himel1 dioecious)back to top |