mRNA_H-elongata_contig54251.12795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54251.12795.1
Unique NamemRNA_H-elongata_contig54251.12795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 6.980e-50
Identity = 108/253 (42.69%), Postives = 147/253 (58.10%), Query Frame = 1
Query:    1 PLKGLYGEAFIRKNLPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYS-----------KPN---------DLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFK 699
            P K LY ++ I+  L W+     G GL N G+TC++NATLQCL++LPPLAQH L   Y            +P          +++  +    K+VH+ G+    + AI P  L++NL+++G Q+R   +EDAHEFL  LL+ M  C L R   K       S   SR+ ETT INRIFGGYLRSRL C  CG   D ++ F+DLS+ L++ V ++E AL+ FV+ E L   N W C GC+  V+AEK LSVFK
Sbjct:  243 PGKELYLDSKIKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGHGPQGIASRGPRPMGGFREFTKVEILAAMEQHTKQVHQ-GQFT-GLGAISPKVLVQNLRMIGRQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGVK-------SSAPSRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIEVALRRFVATERLGSGNEWRCGGCKKPVQAEKSLSVFK 486          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.160e-46
Identity = 96/257 (37.35%), Postives = 142/257 (55.25%), Query Frame = 1
Query:   13 LYGEAFIRKNLPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSK--------------------PNDLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTT--------VEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFK 699
            LY E+ +R NL W+     G GL N G+TCY+N+ LQCL+++PPLAQH L  +YS+                     +D++  +   + ++H+    + +  AIRP     NL+ +G ++R   +EDAHEFL  L++ MAG  L R               +R+ ETT I+R+FGGYLRS+L C  CGF  D ++ F+DL++ + K  ++        ++ AL+ F + E L   N W C GC  LVEAEK+LSVFK
Sbjct:  114 LYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGSYSQGSHATCSESPFSFNGSTDFCEDDILGAMQKLVGQIHQTKSGSAEQQAIRPRTFSDNLRKIGEKFRRGRQEDAHEFLRHLVDKMAGSYLERRGVD-------PFAPNRLAETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTAPETLGAGNEWKCGGCNKLVEAEKNLSVFK 363          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A835YLY7_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.510e-44
Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 1
Query:   43 LPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVLIIGNTIKEVHRRGEINLKMD-----------AIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSV 693
            L W+     G GL N G+TC++NATLQCL + PPL QH L   Y  P           +  H R ++NL  +           AI P  ++ N++ +G Q+R   +EDAHEFL +L++SMA   L R   K  +         R+ ETT+INR+FGGYLR+++ C  C +  + YE ++DLSL +   ++++E ALK F + E L  SNRW C GC+  V A K L++
Sbjct:    1 LEWRELSKVGPGLQNLGNTCFLNATLQCLLYCPPLVQHLLNHKYGAP-------AAAQQAHHGRAQLNLVSNTAAVARSSAYSAISPKTIVANIRTIGKQFRPGRQEDAHEFLRKLVDSMAEAILRRHGVKANA-------PHRLDETTAINRVFGGYLRNQVQCTKCRYCSNTYELYMDLSLDMVGNISSLEDALKRFQAVETLDSSNRWRCGGCKQKVCARKQLTI 214          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: K8ZBR0_NANGC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC)

HSP 1 Score: 158 bits (399), Expect = 4.900e-41
Identity = 98/263 (37.26%), Postives = 141/263 (53.61%), Query Frame = 1
Query:    1 PLKGLYGEAFIRKNLPWQIEVAR-GRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVL--------------------IIGNTIKEVHR--------RGEINLKMDA----IRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLS 690
            P KG++ E+ I   + W I V R G GL+N G+TC++NATLQCLA+LPPLAQ+FL +   +    VL                    ++ + I  +H         RG+   + +     I P  ++ NLK +   +R   +EDAHEFL  LL+++   CL  ++ K       S    R+ ETT ++RIFGGYLRS++ C  CG   + Y++FLDLSL++   V  +E AL  F + E L  +NRW C  C  LV A+K LS
Sbjct:  112 PEKGIFPESKIHPLMTW-IRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRGGGQARGGWLGLVRDLIANMHTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVK-------SNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: W7TEV7_9STRA (Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA)

HSP 1 Score: 158 bits (399), Expect = 6.740e-40
Identity = 98/263 (37.26%), Postives = 141/263 (53.61%), Query Frame = 1
Query:    1 PLKGLYGEAFIRKNLPWQIEVAR-GRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVL--------------------IIGNTIKEVHR--------RGEINLKMDA----IRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLS 690
            P KG++ E+ I   + W I V R G GL+N G+TC++NATLQCLA+LPPLAQ+FL +   +    VL                    ++ + I  +H         RG+   + +     I P  ++ NLK +   +R   +EDAHEFL  LL+++   CL  ++ K       S    R+ ETT ++RIFGGYLRS++ C  CG   + Y++FLDLSL++   V  +E AL  F + E L  +NRW C  C  LV A+K LS
Sbjct:  112 PEKGIFPESKIHPLMTW-IRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRGGGQARGGWLGLVRDLIANMHTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVK-------SNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWRCPACSQLVCAQKRLS 366          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A7S1U5Y3_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA)

HSP 1 Score: 153 bits (386), Expect = 9.460e-40
Identity = 84/221 (38.01%), Postives = 133/221 (60.18%), Query Frame = 1
Query:   43 LPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHF--LEENYSKPNDLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFK 699
            L W+     G GL N G+TC++N+T+QCLA LPPL Q+   + E+  + NDL+ +IG  +++         + +A  P  ++ NL+ +   ++   +EDAHE+L QLL+ +   CL+RS  K  +         R  ET++++R+FGGYLRS+L C  C +  + Y++ LDLSL++   V+++  AL+AF +AE L   NRW C GC  LV A K ++VF+
Sbjct:   50 LRWERVRGPGPGLSNLGNTCFLNSTMQCLAALPPLVQYLESVGEDGGR-NDLLGLIGGFMRKFG-----GTRSNAFAPKAIVGNLRRISRNFKLGRQEDAHEYLRQLLDGLHKSCLMRSGLKPTAC-------GRREETSAMHRLFGGYLRSQLKCNDCAYCSNTYDACLDLSLEIHGKVSSLPSALEAFQAAEILDKDNRWKCGGCNKLVRARKQITVFR 257          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A4D9CS17_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.190e-39
Identity = 100/265 (37.74%), Postives = 138/265 (52.08%), Query Frame = 1
Query:    1 PLKGLYGEAFIRKNLPWQIEVAR-GRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVLIIGNTIKEVHRRGE------INLKMDAIR----------------------------PNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLS 690
            P KG++ E+ I   + W I V R G GL+N G+TC++NATLQCLA+LPPLAQ+FL +   +    VL  G    + HR G       + L  D I                             P  ++ NLK +   +R   +EDAHEFL  LL+++   CL  ++ K       S    R+ ETT ++RIFGGYLRS++ C  CG   + Y++FLDLSL++   V  +E AL  F + E L  +NRW C  C  LV A+K LS
Sbjct:  112 PEKGIFPESKIHPLMTW-IRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEESVPSVLSPG--AGQGHRGGGQARGGWLGLVRDLIANMHTGXXXXXXXXXXXLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQNGCLQAARVK-------SNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTAVETLDRANRWKCPACSQLVCAQKRLS 366          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A7K6TFQ1_CALNI (UBP42 hydrolase (Fragment) n=1 Tax=Caloenas nicobarica TaxID=187106 RepID=A0A7K6TFQ1_CALNI)

HSP 1 Score: 139 bits (350), Expect = 9.020e-36
Identity = 77/215 (35.81%), Postives = 118/215 (54.88%), Query Frame = 1
Query:   49 WQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSV 693
            WQ   + G GL+N G+TC++N+ LQCL + PPLA + L   +S+             EVH    ++    AI P  ++  L+ +G Q++   +EDAHEF    +++M   CL R   +  S  +          +T I+++FGG LRSR+TC SC    D YE+F+D+ L + K  ++V GAL+ FV  E+L G N + C  C+ LV A K L++
Sbjct:   11 WQQTRSVGGGLYNLGNTCFLNSVLQCLTYTPPLANYLLSRQHSQSCAEEGFCMMCTMEVHTEEVLSCSGSAIAPTAVVSELQRIGEQFQLGAQEDAHEFFGCAVDAMQRACLSRRSDRDTSSQS----------STVIDQVFGGLLRSRVTCLSCKAVSDTYEAFVDIPLDI-KAASSVTGALEDFVRPEHLDGENSYKCSKCEQLVSASKRLTI 214          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: A0A7K9XY79_9GRUI (UBP42 hydrolase (Fragment) n=1 Tax=Psophia crepitans TaxID=54359 RepID=A0A7K9XY79_9GRUI)

HSP 1 Score: 136 bits (342), Expect = 3.880e-35
Identity = 82/223 (36.77%), Postives = 123/223 (55.16%), Query Frame = 1
Query:   43 LPWQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFL--EENYSKPND----LVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSV 693
            + WQ + A G GL N G+ CY+N+ LQCL + PPLA + L  E   S P      + ++ G+ I+ +   G      D + P  ++R+L  +G  +   ++EDAH+FL   +E+M   CL    +    L   S +      TT +++IFGG+LRSR+TC SC    D YE+FLD+SL++  T ++V  AL+ FV  E L G N + C  C  +V A K L+V
Sbjct:   18 MEWQQQQAAGAGLCNPGNMCYLNSVLQCLTYTPPLANYLLSGEHRQSCPQQGFCMMCIMEGHVIRALCSSGS-----DLV-PLTVIRSLNRIGEHFELGMQEDAHDFLRCTVEAMQSACL----SGCSDLDTSSQS------TTIVHQIFGGFLRSRVTCLSCSAVSDSYETFLDVSLEIEAT-SSVTAALEDFVKPEQLDGENCFRCHSCDKMVAASKRLTV 223          
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Match: UPI001A93CD70 (ubiquitin carboxyl-terminal hydrolase 42-like n=1 Tax=Hirundo rustica TaxID=43150 RepID=UPI001A93CD70)

HSP 1 Score: 139 bits (351), Expect = 4.790e-35
Identity = 81/221 (36.65%), Postives = 119/221 (53.85%), Query Frame = 1
Query:   49 WQIEVARGRGLFNGGSTCYINATLQCLAFLPPLAQHFLEENYSKPNDLVLIIGNTIKEVHRRGEINLKMDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCL-VRSKAKLESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDLSLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFKVCK 708
            WQ   + G GLFN G+TC++NA LQCL + PPLA + L   +S+           + E H    ++    AIRP+ +L+  + +G  ++   EEDAH+FL   +++M   CL   S   L S             TT +++IFGG LRSR+TC SC    D YE FLD+ L + +  ++V  AL+ FV+ E+L G N + C  C+  V A K  +V +V K
Sbjct:   18 WQQRQSAGAGLFNAGNTCFLNAVLQCLTYTPPLANYLLSREHSQACHQKGFCMMCVMEAHVNRVLHSPASAIRPSGVLKVFRRIGEHFQRGREEDAHDFLCCTVDAMQRACLGASSDLDLSSQ-----------YTTIVHQIFGGSLRSRVTCFSCNAISDSYEVFLDIPLDI-RAASSVTAALEDFVTPEHLDGENSFKCSKCKKNVAASKRFTVHRVPK 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54251.12795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJN5_9PHAE6.980e-5042.69USP domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LD98_ECTSI1.160e-4637.35Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A835YLY7_9STRA3.510e-4438.60USP domain-containing protein (Fragment) n=1 Tax=T... [more]
K8ZBR0_NANGC4.900e-4137.26Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
W7TEV7_9STRA6.740e-4037.26Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=N... [more]
A0A7S1U5Y3_9STRA9.460e-4038.01Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A4D9CS17_9STRA4.190e-3937.74Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
A0A7K6TFQ1_CALNI9.020e-3635.81UBP42 hydrolase (Fragment) n=1 Tax=Caloenas nicoba... [more]
A0A7K9XY79_9GRUI3.880e-3536.77UBP42 hydrolase (Fragment) n=1 Tax=Psophia crepita... [more]
UPI001A93CD704.790e-3536.65ubiquitin carboxyl-terminal hydrolase 42-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54251contigH-elongata_contig54251:1027..3249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D8LD97
KEGG koko:K11855
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size865
Cds size564
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.628733-UTR-H-elongata_contig54251:1026..10751622930883.628733-UTR-H-elongata_contig54251:1026..1075Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54251 1027..1075 -
1691679610.6636403-UTR-H-elongata_contig54251:1026..10751691679610.6636403-UTR-H-elongata_contig54251:1026..1075Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54251 1027..1075 -
1622930883.6992168-UTR-H-elongata_contig54251:2154..21841622930883.6992168-UTR-H-elongata_contig54251:2154..2184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54251 2155..2184 -
1691679610.706174-UTR-H-elongata_contig54251:2154..21841691679610.706174-UTR-H-elongata_contig54251:2154..2184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54251 2155..2184 -
1622930883.716191-UTR-H-elongata_contig54251:2564..26061622930883.716191-UTR-H-elongata_contig54251:2564..2606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54251 2565..2606 -
1691679610.7166498-UTR-H-elongata_contig54251:2564..26061691679610.7166498-UTR-H-elongata_contig54251:2564..2606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54251 2565..2606 -
1622930883.7306325-UTR-H-elongata_contig54251:3069..32491622930883.7306325-UTR-H-elongata_contig54251:3069..3249Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54251 3070..3249 -
1691679610.7273617-UTR-H-elongata_contig54251:3069..32491691679610.7273617-UTR-H-elongata_contig54251:3069..3249Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54251 3070..3249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930883.64549-CDS-H-elongata_contig54251:1075..13961622930883.64549-CDS-H-elongata_contig54251:1075..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54251 1076..1396 -
1691679610.676555-CDS-H-elongata_contig54251:1075..13961691679610.676555-CDS-H-elongata_contig54251:1075..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54251 1076..1396 -
1622930883.670082-CDS-H-elongata_contig54251:1760..19281622930883.670082-CDS-H-elongata_contig54251:1760..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54251 1761..1928 -
1691679610.6849434-CDS-H-elongata_contig54251:1760..19281691679610.6849434-CDS-H-elongata_contig54251:1760..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54251 1761..1928 -
1622930883.6864383-CDS-H-elongata_contig54251:2079..21541622930883.6864383-CDS-H-elongata_contig54251:2079..2154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54251 2080..2154 -
1691679610.6931477-CDS-H-elongata_contig54251:2079..21541691679610.6931477-CDS-H-elongata_contig54251:2079..2154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54251 2080..2154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54251.12795.1prot_H-elongata_contig54251.12795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54251 1076..2154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54251.12795.1

>prot_H-elongata_contig54251.12795.1 ID=prot_H-elongata_contig54251.12795.1|Name=mRNA_H-elongata_contig54251.12795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp
MDAIRPNQLLRNLKLVGPQYRTNIEEDAHEFLHQLLESMAGCCLVRSKAK
LESLTNPSMTKSRITETTSINRIFGGYLRSRLTCKSCGFHRDRYESFLDL
SLQLAKTVTTVEGALKAFVSAEYLTGSNRWHCDGCQTLVEAEKHLSVFKV
CKRGKHTRVKPTVYLSVVAMFKRMSKKHLYDKLYLKH*
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mRNA from alignment at H-elongata_contig54251:1027..3249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54251.12795.1 ID=mRNA_H-elongata_contig54251.12795.1|Name=mRNA_H-elongata_contig54251.12795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2223bp|location=Sequence derived from alignment at H-elongata_contig54251:1027..3249- (Himanthalia elongata Himel1 dioecious)
CCGTTAAAGGGCCTGTACGGGGAAGCATTCATCCGAAAGAACCTCCCGTG GCAGATCGAGGTCGCGAGGGGACGAGGTCTTTTTAACGGTGGCAGTACAT GCTACATCAATGCCACCCTGCAGTGTCTTGCCTTCCTTCCGCCCCTTGCT CAGCACTTCCTGGAGGAGAACTACTCGAAGGTGGGGAGGTGAAGAGGTGA AGAAGTAGGACGAAAAGAAGACGATGATGATGGTGGTGGTGAAGAATCTG TGTATTATTCATGATATCGCGGGTCAGAACACTTGTCGATTGGTGTCGAC GGCTCGGTGTGTGGCATCCACCGTACGCCTGGAAACGATACACTAGTAGT GTAACATCAGTTGTTCTCATTGTGGTGGTGCAGTTACAACGAGCTTTTCG GGCTCGTCGATATGCTTTTCCTTATTTTCTTGCTTCACCCCGGCCACCAG CTCTTATCGTGCTGGCGACGGCACGGGACTTGATAAACATGCACGGGGAG AGGTACAGTACATGATTGCGTTCGTCCGCCTTGCGGGCCTAAATTGTCCA CGGGTTTCCACTCACCCTGCGTTTTGTCGTTGCGCCCGTGTTCAAAATAT TCGTGCATTTCCCCTGTGATACAAACGCCGAGGAACTGGTCAGCCTAATG ACCTTGTTCTCATTATTGGGAACACAATAAAAGAGGTGAGTCGAACCAAA ATAATCAACCAGAGCCAAAAGCGCTGCCGGGGGCTGGGTTTCCACTGGGA TGGAGAGGGAAGACAAGGGGGGGAGATAGGCGATTGTGTGTGTTTGTGTT TATGCCTAATAAAGTGCTCCTAACCACGCAATCCGGCCCTGTAATACTCT TAATATACGTTCTAGACTACTGCATGTAACCCACCCCAGGGTCACGTGTG AGTGTGTGTTTTTGTTTTTGTTTTTTTATGTTGTTTTTTTTCTAGACCAA AATATCGGGTGACTTGAGTGTTATTTTAAACCAATCGCAGCTCTCTGCGT GCCGTCATCATAACTCATTAATCATGTTGCATCACTCACCGCTCGTGTTT TTTTGGCGGTGGCAGGTACACAGGCGGGGCGAGATCAACCTCAAAATGGA TGCGATTAGACCTAACCAGCTATTGCGCAACCTCAAGCTGGTTGGGCCAC AATACCGCACAAATATTGAGGTAAAGACGAAAAGGCTAGATATCTTGATG CTTTTAGGCAGCGTAGTACAGTTGTTTTGCGAAGCACCTGTACCGAGTAA TTAACCACGTATTGCCACTATCAGAGCCAAGCCAACCCTCGGTCGAACGT AAAAAAAACAAACGTTTGCAGGAGGATGCACACGAGTTTTTGCACCAGCT GCTCGAGAGCATGGCGGGCTGCTGTCTGGTCCGCAGCAAGGCCAAGCTCG AATCTTTGACCAACCCCAGCATGACGAAGAGCCGCATAACTGAAACAACA TCGATCAACCGTATATTCGGTGGTTACCTCCGAAGCCGGGTGAGACTCGA TGACTGGTCTATCTCCATTGTGTTACGCGATTGGCCGTTTTTCACGGAGG ACGAGGGAGGTGAGTGATGCTCACGCCCATCCCTCCCGATAATGCTTACT GCCTCGATGGTTTACACACCGGATTAAAATGAAAGAGGCGTTTTTTACTA AGGTGCGTTTGATTGGCCAGGTTCTCTCCGACCTGCCCCCCCATCTCTAT GTAGTTTTTTGTTGTTGTTAAAGGTAGTGCACGCGCAGATTTGTACGTGT CTTATAACTCAATTGCGAGCTTCCCCACTGATGCTCCCGCCCCGCCGCCG CCGAATCCCACCCTCTCCGTTACGTCGCGTGACGCGCTCACAAATGTGCG TAGTTGACGTGCAAATCCTGTGGGTTTCATAGGGATAGGTATGAGTCATT TCTAGACCTCTCTCTGCAACTCGCCAAAACCGTCACGACCGTCGAGGGCG CTTTGAAGGCGTTCGTTTCGGCAGAGTACCTCACGGGGTCTAACAGGTGG CACTGCGACGGCTGTCAGACTCTGGTTGAGGCTGAGAAACACCTTTCGGT CTTCAAGGTGTGTAAAAGGGGGAAACACACGCGCGTAAAACCGACGGTGT ATCTCTCCGTTGTAGCCATGTTTAAAAGAATGAGTAAGAAGCACTTATAT GATAAATTGTATCTTAAGCATTGATGCGGAGGGTATCACATCCGTTCGTT TCCTGCTCTGACGTTATTTCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig54251:1027..3249-

>mRNA_H-elongata_contig54251.12795.1 ID=mRNA_H-elongata_contig54251.12795.1|Name=mRNA_H-elongata_contig54251.12795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig54251:1027..3249- (Himanthalia elongata Himel1 dioecious)
ATGGATGCGATTAGACCTAACCAGCTATTGCGCAACCTCAAGCTGGTTGG
GCCACAATACCGCACAAATATTGAGATGGATGCGATTAGACCTAACCAGC
TATTGCGCAACCTCAAGCTGGTTGGGCCACAATACCGCACAAATATTGAG
GAGGATGCACACGAGTTTTTGCACCAGCTGCTCGAGAGCATGGCGGGCTG
CTGTCTGGTCCGCAGCAAGGCCAAGCTCGAATCTTTGACCAACCCCAGCA
TGACGAAGAGCCGCATAACTGAAACAACATCGATCAACCGTATATTCGGT
GGTTACCTCCGAAGCCGGGAGGATGCACACGAGTTTTTGCACCAGCTGCT
CGAGAGCATGGCGGGCTGCTGTCTGGTCCGCAGCAAGGCCAAGCTCGAAT
CTTTGACCAACCCCAGCATGACGAAGAGCCGCATAACTGAAACAACATCG
ATCAACCGTATATTCGGTGGTTACCTCCGAAGCCGGTTGACGTGCAAATC
CTGTGGGTTTCATAGGGATAGGTATGAGTCATTTCTAGACCTCTCTCTGC
AACTCGCCAAAACCGTCACGACCGTCGAGGGCGCTTTGAAGGCGTTCGTT
TCGGCAGAGTACCTCACGGGGTCTAACAGGTGGCACTGCGACGGCTGTCA
GACTCTGGTTGAGGCTGAGAAACACCTTTCGGTCTTCAAGGTGTGTAAAA
GGGGGAAACACACGCGCGTAAAACCGACGGTGTATCTCTCCGTTGTAGCC
ATGTTTAAAAGAATGAGTAAGAAGCACTTATATGATAAATTGTATCTTAA
GCATTGATTGACGTGCAAATCCTGTGGGTTTCATAGGGATAGGTATGAGT
CATTTCTAGACCTCTCTCTGCAACTCGCCAAAACCGTCACGACCGTCGAG
GGCGCTTTGAAGGCGTTCGTTTCGGCAGAGTACCTCACGGGGTCTAACAG
GTGGCACTGCGACGGCTGTCAGACTCTGGTTGAGGCTGAGAAACACCTTT
CGGTCTTCAAGGTGTGTAAAAGGGGGAAACACACGCGCGTAAAACCGACG
GTGTATCTCTCCGTTGTAGCCATGTTTAAAAGAATGAGTAAGAAGCACTT
ATATGATAAATTGTATCTTAAGCATTGA
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