mRNA_H-elongata_contig116156.1275.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE) HSP 1 Score: 104 bits (260), Expect = 5.760e-26 Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 1
Query: 1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQVM 366
L VY DAD+ASK D RS+SG V +V SRTQ CVTLS T A+YVA + E +F+R I FM P M I + EDN+GA +A+NP+S SK+IDVR HF+RELV++KE V+
Sbjct: 27 LQVYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQ-IWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNSKHIDVRHHFLRELVERKESSVI 149
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.240e-25 Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
+ V+ DADYASK TD RS+SG V+ V SRTQ CVTLS T A+YVA A+ E +F+R V FM P+ M I + EDN+GA +A NP++ SK+IDVR HFIRELV++KE+ +
Sbjct: 167 MQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV-WRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 288
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.470e-25 Identity = 60/121 (49.59%), Postives = 83/121 (68.60%), Query Frame = 1
Query: 7 VYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
VY DAD+ASK TD RS+SG VL + V SRTQ CVTLS T A+YVA +G E +FV+ ++ F++P+ + +I + EDNEGA A+AENP+S SK+IDV HF+R L ++ L++
Sbjct: 223 VYVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGML-EFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVSHHFLRNLTEEGVLEI 342
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.110e-25 Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQVM 366
L+ Y DAD+ASK + RS+SG V SV SRTQ CVTLS T A+YVA + E IF+R I FM P M I + EDN+GA +A+NP+S SK+IDVR HF+RELV++KE+ V+
Sbjct: 73 LAGYADADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQ-IWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI 195
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.940e-25 Identity = 57/121 (47.11%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 7 VYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPNMY--EISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
VY DAD+ASK TD RS+SG V V SRTQ CV+ S + A+Y+A +G E +FV ++ F++P++ +I ++EDNEGA A+AENP+S RSK+IDVR HF+R L ++ ++V
Sbjct: 105 VYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQ-FLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV 224
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE) HSP 1 Score: 103 bits (257), Expect = 4.090e-25 Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 10 YKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQVM 366
Y DAD+ASK D RS+SG V +V SRTQ CVTLS T A+YVA + E +F+R I FM P M I + EDN+GA +A+NP+S SK+IDVR HF+RELV++KE+ V+
Sbjct: 60 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQ-IWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI 179
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 107 bits (267), Expect = 5.450e-25 Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
+ V+ DADYASK TD RS+SG V+ V SRTQ CVTLS T A+YVA A+ E +F+R V FM P+ M I + EDN+GA +A NP++ SK+IDVR HFIRELV++KE+ +
Sbjct: 284 MQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV-WRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 405
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 107 bits (266), Expect = 5.710e-25 Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
+ V+ DADYASK D RS+SG V+ V SRTQ CVTLS T A+YVAFA+ E +F+R V FM P+ M I + EDN+GA +A NP++ SK+IDVR HFIRELV++KE+ +
Sbjct: 259 MQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQV-WRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 380
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KHH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH9_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.950e-25 Identity = 61/123 (49.59%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
+ V+ DADYASK RS+SG V+ V SRTQ CVTLS T A+YVA A+ E +F+R V+ FM P+ M I + EDN+GA +A NP++ SK+IDVR HFIRELV++KE+ +
Sbjct: 521 MQVFVDADYASKAAGRRSVSGGLVMCGCVCVTWFSRTQKCVTLSTTEAEYVAIADALKEVLFLRQVLWRFMLPDAGMPCIPVFEDNQGAIQIANNPITNSNSKHIDVRHHFIRELVERKEISI 643
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.020e-24 Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
+ V+ DADYASK D RS+SG V+ + SRTQ CVTLS T A+YV+ A+ E +F+R V F+ P M I ++EDN+GA +A+NP+S SK+IDVR HFIRELV++KE+ +
Sbjct: 100 MEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV-RRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISI 221 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig116156.1275.1 >prot_H-elongata_contig116156.1275.1 ID=prot_H-elongata_contig116156.1275.1|Name=mRNA_H-elongata_contig116156.1275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp MSFMQPNMYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKback to top mRNA from alignment at H-elongata_contig116156:1629..2000+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig116156.1275.1 ID=mRNA_H-elongata_contig116156.1275.1|Name=mRNA_H-elongata_contig116156.1275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig116156:1629..2000+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig116156:1629..2000+ >mRNA_H-elongata_contig116156.1275.1 ID=mRNA_H-elongata_contig116156.1275.1|Name=mRNA_H-elongata_contig116156.1275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig116156:1629..2000+ (Himanthalia elongata Himel1 dioecious)back to top |