mRNA_H-elongata_contig116156.1275.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116156.1275.1
Unique NamemRNA_H-elongata_contig116156.1275.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.760e-26
Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQVM 366
            L VY DAD+ASK  D RS+SG  V     +V   SRTQ CVTLS T A+YVA  +   E +F+R  I  FM P   M  I + EDN+GA  +A+NP+S   SK+IDVR HF+RELV++KE  V+
Sbjct:   27 LQVYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQ-IWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNSKHIDVRHHFLRELVERKESSVI 149          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.240e-25
Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
            + V+ DADYASK TD RS+SG  V+     V   SRTQ CVTLS T A+YVA A+   E +F+R V   FM P+  M  I + EDN+GA  +A NP++   SK+IDVR HFIRELV++KE+ +
Sbjct:  167 MQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV-WRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 288          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KGA6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.470e-25
Identity = 60/121 (49.59%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    7 VYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
            VY DAD+ASK TD RS+SG  VL  +  V   SRTQ CVTLS T A+YVA  +G  E +FV+ ++  F++P+  + +I + EDNEGA A+AENP+S   SK+IDV  HF+R L ++  L++
Sbjct:  223 VYVDADFASKATDRRSVSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGML-EFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVSHHFLRNLTEEGVLEI 342          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.110e-25
Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQVM 366
            L+ Y DAD+ASK  + RS+SG  V     SV   SRTQ CVTLS T A+YVA  +   E IF+R  I  FM P   M  I + EDN+GA  +A+NP+S   SK+IDVR HF+RELV++KE+ V+
Sbjct:   73 LAGYADADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQ-IWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI 195          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.940e-25
Identity = 57/121 (47.11%), Postives = 82/121 (67.77%), Query Frame = 1
Query:    7 VYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPNMY--EISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
            VY DAD+ASK TD RS+SG  V      V   SRTQ CV+ S + A+Y+A  +G  E +FV  ++  F++P++   +I ++EDNEGA A+AENP+S  RSK+IDVR HF+R L ++  ++V
Sbjct:  105 VYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQ-FLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEV 224          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.090e-25
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 1
Query:   10 YKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQVM 366
            Y DAD+ASK  D RS+SG  V     +V   SRTQ CVTLS T A+YVA  +   E +F+R  I  FM P   M  I + EDN+GA  +A+NP+S   SK+IDVR HF+RELV++KE+ V+
Sbjct:   60 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQ-IWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVI 179          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 5.450e-25
Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
            + V+ DADYASK TD RS+SG  V+     V   SRTQ CVTLS T A+YVA A+   E +F+R V   FM P+  M  I + EDN+GA  +A NP++   SK+IDVR HFIRELV++KE+ +
Sbjct:  284 MQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQV-WRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 405          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 5.710e-25
Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
            + V+ DADYASK  D RS+SG  V+     V   SRTQ CVTLS T A+YVAFA+   E +F+R V   FM P+  M  I + EDN+GA  +A NP++   SK+IDVR HFIRELV++KE+ +
Sbjct:  259 MQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQV-WRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISI 380          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5KHH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH9_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.950e-25
Identity = 61/123 (49.59%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
            + V+ DADYASK    RS+SG  V+     V   SRTQ CVTLS T A+YVA A+   E +F+R V+  FM P+  M  I + EDN+GA  +A NP++   SK+IDVR HFIRELV++KE+ +
Sbjct:  521 MQVFVDADYASKAAGRRSVSGGLVMCGCVCVTWFSRTQKCVTLSTTEAEYVAIADALKEVLFLRQVLWRFMLPDAGMPCIPVFEDNQGAIQIANNPITNSNSKHIDVRHHFIRELVERKEISI 643          
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.020e-24
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 LSVYKDADYASKTTDMRSISGVGVLPENASVYGTSRTQHCVTLSAT*AKYVAFAEGENEGIFVRSVIMSFMQPN--MYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKKELQV 363
            + V+ DADYASK  D RS+SG  V+     +   SRTQ CVTLS T A+YV+ A+   E +F+R V   F+ P   M  I ++EDN+GA  +A+NP+S   SK+IDVR HFIRELV++KE+ +
Sbjct:  100 MEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV-RRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISI 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116156.1275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI51_9PHAE5.760e-2650.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.240e-2551.22Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGA6_9PHAE1.470e-2549.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIJ7_9PHAE2.110e-2550.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE2.940e-2547.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW6_9PHAE4.090e-2550.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE5.450e-2551.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3H4_9PHAE5.710e-2551.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHH9_9PHAE6.950e-2549.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTK6_9PHAE1.020e-2448.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116156contigH-elongata_contig116156:1629..2000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size372
Cds size171
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.1126397-UTR-H-elongata_contig116156:1628..18291622929675.1126397-UTR-H-elongata_contig116156:1628..1829Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116156 1629..1829 +
1691679115.0968096-UTR-H-elongata_contig116156:1628..18291691679115.0968096-UTR-H-elongata_contig116156:1628..1829Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116156 1629..1829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.1267-CDS-H-elongata_contig116156:1829..20001622929675.1267-CDS-H-elongata_contig116156:1829..2000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116156 1830..2000 +
1691679115.1075299-CDS-H-elongata_contig116156:1829..20001691679115.1075299-CDS-H-elongata_contig116156:1829..2000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116156 1830..2000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116156.1275.1prot_H-elongata_contig116156.1275.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116156 1830..2000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116156.1275.1

>prot_H-elongata_contig116156.1275.1 ID=prot_H-elongata_contig116156.1275.1|Name=mRNA_H-elongata_contig116156.1275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MSFMQPNMYEISLMEDNEGAEAMAENPVSLGRSKYIDVRWHFIRELVQKK
ELQVMRC
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mRNA from alignment at H-elongata_contig116156:1629..2000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116156.1275.1 ID=mRNA_H-elongata_contig116156.1275.1|Name=mRNA_H-elongata_contig116156.1275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig116156:1629..2000+ (Himanthalia elongata Himel1 dioecious)
CTGTCGGTCTACAAAGATGCTGATTACGCCAGTAAAACTACAGACATGCG TTCGATTTCGGGTGTTGGAGTGTTGCCGGAGAATGCATCGGTGTACGGGA CGAGCCGCACACAGCACTGTGTGACGCTGTCTGCGACATAGGCAAAGTAC GTTGCGTTTGCCGAAGGGGAAAACGAGGGGATATTTGTTAGATCGGTAAT AATGTCTTTCATGCAACCCAACATGTACGAAATTTCTTTGATGGAAGACA ACGAGGGGGCCGAAGCAATGGCGGAAAACCCCGTTAGCTTAGGTAGGAGT AAGTATATCGATGTAAGATGGCATTTTATTCGTGAGCTAGTTCAGAAGAA GGAACTGCAAGTCATGCGTTGT
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Coding sequence (CDS) from alignment at H-elongata_contig116156:1629..2000+

>mRNA_H-elongata_contig116156.1275.1 ID=mRNA_H-elongata_contig116156.1275.1|Name=mRNA_H-elongata_contig116156.1275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig116156:1629..2000+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTTCATGCAACCCAACATGTACGAAATTTCTTTGATGGAAGACAA
CGAGGGGGCCGAAGCAATGGCGGAAAACCCCGTTAGCTTAGGTAGGAGTA
AGTATATCGATGTAAGATGGCATTTTATTCGTGAGCTAGTTCAGAAGAAG
GAACTGCAAGTCATGCGTTGTATGTCTTTCATGCAACCCAACATGTACGA
AATTTCTTTGATGGAAGACAACGAGGGGGCCGAAGCAATGGCGGAAAACC
CCGTTAGCTTAGGTAGGAGTAAGTATATCGATGTAAGATGGCATTTTATT
CGTGAGCTAGTTCAGAAGAAGGAACTGCAAGTCATGCGTTGT
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