mRNA_H-elongata_contig53875.12748.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: D8LE03_ECTSI (PUA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE03_ECTSI) HSP 1 Score: 147 bits (372), Expect = 2.350e-43 Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1
Query: 1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
RFSKDDVSSSSQVKSSVQRG RAKL+EQFPN E YLE ILPKK N+T+AKCKDRVSLICCDGVPLFFQQRDG I+PTLR LH+
Sbjct: 4 RFSKDDVSSSSQVKSSVQRGFRAKLLEQFPNSEPYLEDILPKKGNVTIAKCKDRVSLICCDGVPLFFQQRDGHIFPTLRILHK 86
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A835Z9W5_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W5_9STRA) HSP 1 Score: 108 bits (270), Expect = 6.790e-28 Identity = 55/84 (65.48%), Postives = 69/84 (82.14%), Query Frame = 1
Query: 1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
RF++D+ VSS+SQ+KSSVQR +RAKLIEQFP E L+ ILPKK NIT+AKC ++VSLIC D +FFQ+RDG I+PTLR +HQ
Sbjct: 4 RFTQDENVSSNSQIKSSVQRSMRAKLIEQFPLIEEVLDDILPKKGNITIAKCSNKVSLICRDNKIMFFQERDGPIFPTLRLVHQ 87
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7S2Y120_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y120_9STRA) HSP 1 Score: 100 bits (250), Expect = 6.870e-25 Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query: 1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
RF+ ++SS+SQVKSSVQRGIRAK++EQ+P E ++ ILPKK++ VA+C + V LIC G PLFFQ RDG +P LR +HQ
Sbjct: 4 RFTNSEISSASQVKSSVQRGIRAKIVEQYPALEEEIDEILPKKSDFVVARCPNHVQLICHGGKPLFFQCRDGPFFPCLRLVHQ 86
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: B3RWP3_TRIAD (PUA domain-containing protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3RWP3_TRIAD) HSP 1 Score: 98.2 bits (243), Expect = 7.980e-24 Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 7 SKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQCEWV 261
SK D+ SSSQVKSSVQRGIRAK+++QFP+ + Y++ ILPKKA + + KC D + ++ + LFF+QRDG +PTLR LHQ ++
Sbjct: 7 SKQDIVSSSQVKSSVQRGIRAKVLQQFPDLQDYIDDILPKKAALILVKCHDHIEIVSINTKLLFFRQRDGPFFPTLRLLHQYPFI 91
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7S1DFR4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DFR4_HEMAN) HSP 1 Score: 94.4 bits (233), Expect = 4.080e-23 Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
+F D+V S++KSS QRGIR+ ++EQFP E Y+E I+PKKA + VAKC+ ++S++ D PLF+ RDG YPTLR +H+
Sbjct: 4 KFGGDEVRDKSKIKSSQQRGIRSSILEQFPKLEPYMEQIMPKKAEVQVAKCEGKISVVMVDDEPLFYNVRDGPYYPTLRLVHK 86
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: W7TYT1_9STRA (Pseudouridine synthase and archaeosine transglycosylase domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYT1_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 4.540e-23 Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
RF++DD SS+ QVKSSVQRGIR ++EQ+P ES +E I PKKAN+ V KC V ++ + PLFF RDG +PTLR LHQ
Sbjct: 55 RFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQ 137
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A024GCP6_9STRA (PUA domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCP6_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.850e-22 Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQC----EWVR 264
RFS D+ ++S SQVKSS QR IR+ ++ Q+P E YLE +LPKKA + VAKC + + L+ DG+PLFF RDG PTL+ LHQ +WVR
Sbjct: 4 RFSVDENIASHSQVKSSQQRAIRSSILTQYPEVEPYLEQLLPKKAPMIVAKCHNHLQLVLHDGIPLFFNYRDGPFMPTLKVLHQIPKAMQWVR 96
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A6T8L136_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6T8L136_HEMAN) HSP 1 Score: 94.4 bits (233), Expect = 2.740e-22 Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
+F D+V S++KSS QRGIR+ ++EQFP E Y+E I+PKKA + VAKC+ ++S++ D PLF+ RDG YPTLR +H+
Sbjct: 4 KFGGDEVRDKSKIKSSQQRGIRSSILEQFPKLEPYMEQIMPKKAEVQVAKCEGKISVVMVDDEPLFYNVRDGPYYPTLRLVHK 86
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7R9XUX2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XUX2_9VIRI) HSP 1 Score: 93.6 bits (231), Expect = 7.930e-22 Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1
Query: 1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKAN--ITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
RF+ DDVSS SQVKSSV RGIRAK+ QFPN E L+ +LPK + + + KC DR+SL+ PLFFQ RDG YPTLR LH+
Sbjct: 23 RFTYDDVSSVSQVKSSVARGIRAKIAAQFPNLEPALDDVLPKGKDTPMMIGKCTDRISLVVVRDEPLFFQFRDGPYYPTLRLLHR 107
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: W2RFJ5_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RFJ5_PHYPN) HSP 1 Score: 91.3 bits (225), Expect = 1.540e-21 Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQCEWV 261
RFS D+ +S+SS+VKSS QR IRAK++EQ+P+ E Y E +PKKA + VAKC + + ++ +G PLFF QRDG PTL+ LH+ V
Sbjct: 4 RFSVDEHMSTSSKVKSSQQRSIRAKVLEQYPDLEPYAEMFMPKKAPMVVAKCHNHIQIVLHEGEPLFFNQRDGPFMPTLKLLHKVPHV 91 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53875.12748.1 >prot_H-elongata_contig53875.12748.1 ID=prot_H-elongata_contig53875.12748.1|Name=mRNA_H-elongata_contig53875.12748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKback to top mRNA from alignment at H-elongata_contig53875:194..1061- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53875.12748.1 ID=mRNA_H-elongata_contig53875.12748.1|Name=mRNA_H-elongata_contig53875.12748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=868bp|location=Sequence derived from alignment at H-elongata_contig53875:194..1061- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53875:194..1061- >mRNA_H-elongata_contig53875.12748.1 ID=mRNA_H-elongata_contig53875.12748.1|Name=mRNA_H-elongata_contig53875.12748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig53875:194..1061- (Himanthalia elongata Himel1 dioecious)back to top |