mRNA_H-elongata_contig53875.12748.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53875.12748.1
Unique NamemRNA_H-elongata_contig53875.12748.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: D8LE03_ECTSI (PUA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE03_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.350e-43
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
            RFSKDDVSSSSQVKSSVQRG RAKL+EQFPN E YLE ILPKK N+T+AKCKDRVSLICCDGVPLFFQQRDG I+PTLR LH+
Sbjct:    4 RFSKDDVSSSSQVKSSVQRGFRAKLLEQFPNSEPYLEDILPKKGNVTIAKCKDRVSLICCDGVPLFFQQRDGHIFPTLRILHK 86          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A835Z9W5_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.790e-28
Identity = 55/84 (65.48%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
            RF++D+ VSS+SQ+KSSVQR +RAKLIEQFP  E  L+ ILPKK NIT+AKC ++VSLIC D   +FFQ+RDG I+PTLR +HQ
Sbjct:    4 RFTQDENVSSNSQIKSSVQRSMRAKLIEQFPLIEEVLDDILPKKGNITIAKCSNKVSLICRDNKIMFFQERDGPIFPTLRLVHQ 87          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7S2Y120_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y120_9STRA)

HSP 1 Score: 100 bits (250), Expect = 6.870e-25
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
            RF+  ++SS+SQVKSSVQRGIRAK++EQ+P  E  ++ ILPKK++  VA+C + V LIC  G PLFFQ RDG  +P LR +HQ
Sbjct:    4 RFTNSEISSASQVKSSVQRGIRAKIVEQYPALEEEIDEILPKKSDFVVARCPNHVQLICHGGKPLFFQCRDGPFFPCLRLVHQ 86          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: B3RWP3_TRIAD (PUA domain-containing protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3RWP3_TRIAD)

HSP 1 Score: 98.2 bits (243), Expect = 7.980e-24
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    7 SKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQCEWV 261
            SK D+ SSSQVKSSVQRGIRAK+++QFP+ + Y++ ILPKKA + + KC D + ++  +   LFF+QRDG  +PTLR LHQ  ++
Sbjct:    7 SKQDIVSSSQVKSSVQRGIRAKVLQQFPDLQDYIDDILPKKAALILVKCHDHIEIVSINTKLLFFRQRDGPFFPTLRLLHQYPFI 91          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7S1DFR4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DFR4_HEMAN)

HSP 1 Score: 94.4 bits (233), Expect = 4.080e-23
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
            +F  D+V   S++KSS QRGIR+ ++EQFP  E Y+E I+PKKA + VAKC+ ++S++  D  PLF+  RDG  YPTLR +H+
Sbjct:    4 KFGGDEVRDKSKIKSSQQRGIRSSILEQFPKLEPYMEQIMPKKAEVQVAKCEGKISVVMVDDEPLFYNVRDGPYYPTLRLVHK 86          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: W7TYT1_9STRA (Pseudouridine synthase and archaeosine transglycosylase domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYT1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.540e-23
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
            RF++DD SS+ QVKSSVQRGIR  ++EQ+P  ES +E I PKKAN+ V KC   V ++  +  PLFF  RDG  +PTLR LHQ
Sbjct:   55 RFNEDDFSSNGQVKSSVQRGIRNSILEQYPRLESVMEDIFPKKANVVVVKCPGHVQVVVLNKEPLFFSLRDGHFFPTLRLLHQ 137          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A024GCP6_9STRA (PUA domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCP6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.850e-22
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQC----EWVR 264
            RFS D+ ++S SQVKSS QR IR+ ++ Q+P  E YLE +LPKKA + VAKC + + L+  DG+PLFF  RDG   PTL+ LHQ     +WVR
Sbjct:    4 RFSVDENIASHSQVKSSQQRAIRSSILTQYPEVEPYLEQLLPKKAPMIVAKCHNHLQLVLHDGIPLFFNYRDGPFMPTLKVLHQIPKAMQWVR 96          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A6T8L136_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6T8L136_HEMAN)

HSP 1 Score: 94.4 bits (233), Expect = 2.740e-22
Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
            +F  D+V   S++KSS QRGIR+ ++EQFP  E Y+E I+PKKA + VAKC+ ++S++  D  PLF+  RDG  YPTLR +H+
Sbjct:    4 KFGGDEVRDKSKIKSSQQRGIRSSILEQFPKLEPYMEQIMPKKAEVQVAKCEGKISVVMVDDEPLFYNVRDGPYYPTLRLVHK 86          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: A0A7R9XUX2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XUX2_9VIRI)

HSP 1 Score: 93.6 bits (231), Expect = 7.930e-22
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKAN--ITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQ 249
            RF+ DDVSS SQVKSSV RGIRAK+  QFPN E  L+ +LPK  +  + + KC DR+SL+     PLFFQ RDG  YPTLR LH+
Sbjct:   23 RFTYDDVSSVSQVKSSVARGIRAKIAAQFPNLEPALDDVLPKGKDTPMMIGKCTDRISLVVVRDEPLFFQFRDGPYYPTLRLLHR 107          
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Match: W2RFJ5_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RFJ5_PHYPN)

HSP 1 Score: 91.3 bits (225), Expect = 1.540e-21
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 RFSKDD-VSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAKCKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQCEWV 261
            RFS D+ +S+SS+VKSS QR IRAK++EQ+P+ E Y E  +PKKA + VAKC + + ++  +G PLFF QRDG   PTL+ LH+   V
Sbjct:    4 RFSVDEHMSTSSKVKSSQQRSIRAKVLEQYPDLEPYAEMFMPKKAPMVVAKCHNHIQIVLHEGEPLFFNQRDGPFMPTLKLLHKVPHV 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53875.12748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE03_ECTSI2.350e-4385.54PUA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z9W5_9STRA6.790e-2865.48PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2Y120_9STRA6.870e-2557.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B3RWP3_TRIAD7.980e-2454.12PUA domain-containing protein (Fragment) n=2 Tax=T... [more]
A0A7S1DFR4_HEMAN4.080e-2350.60Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
W7TYT1_9STRA4.540e-2356.63Pseudouridine synthase and archaeosine transglycos... [more]
A0A024GCP6_9STRA1.850e-2252.69PUA domain-containing protein n=1 Tax=Albugo candi... [more]
A0A6T8L136_HEMAN2.740e-2250.60Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
A0A7R9XUX2_9VIRI7.930e-2258.82Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
W2RFJ5_PHYPN1.540e-2152.27Uncharacterized protein n=6 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53875contigH-elongata_contig53875:194..1061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue1.6e-34
Seed eggNOG ortholog2880.D8LE03
Preferred nameMCTS1
KEGG koko:K02883,ko:K07575
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0016032,GO:0016043,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042127,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0075522,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1990904,GO:2000112
EggNOG free text desc.formation of translation preinitiation complex
EggNOG OGsCOG2016@1,KOG2523@2759
Ec32 ortholog descriptionPUA domain
Ec32 orthologEc-05_004570.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.796063-CDS-H-elongata_contig53875:193..3731622930877.796063-CDS-H-elongata_contig53875:193..373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53875 194..373 -
1691679608.2842138-CDS-H-elongata_contig53875:193..3731691679608.2842138-CDS-H-elongata_contig53875:193..373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53875 194..373 -
1622930877.8152902-CDS-H-elongata_contig53875:962..10611622930877.8152902-CDS-H-elongata_contig53875:962..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53875 963..1061 -
1691679608.2961435-CDS-H-elongata_contig53875:962..10611691679608.2961435-CDS-H-elongata_contig53875:962..1061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53875 963..1061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53875.12748.1prot_H-elongata_contig53875.12748.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53875 194..1061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53875.12748.1

>prot_H-elongata_contig53875.12748.1 ID=prot_H-elongata_contig53875.12748.1|Name=mRNA_H-elongata_contig53875.12748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
RFSKDDVSSSSQVKSSVQRGIRAKLIEQFPNCESYLETILPKKANITVAK
CKDRVSLICCDGVPLFFQQRDGFIYPTLRALHQCEWVRWVSE*
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mRNA from alignment at H-elongata_contig53875:194..1061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53875.12748.1 ID=mRNA_H-elongata_contig53875.12748.1|Name=mRNA_H-elongata_contig53875.12748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=868bp|location=Sequence derived from alignment at H-elongata_contig53875:194..1061- (Himanthalia elongata Himel1 dioecious)
AGGTTCTCGAAAGATGACGTGTCCTCCTCTAGCCAGGTGAAATCCTCGGT TCAACGAGGCATTCGCGCAAAGCTCATCGAGCAGTTTCCCAACTGCGAGG TGAGCCCTTTCGACCGCCGTCCATGTTCACCACGACACCAAAACATACCG TATAACATATAATTTTTGCATTGTACCAGTATAACCAACAGACCAACCAA GGGTCAACGGCGGTAAAAATCGAATTTCCGCAACGACCCTAGTAGGGAAA TGGTGCCATGTTAGCGCATGGATTTATTTTATTCATATAGAGATCGCGGT GTAGTGTGAGTGACTGACTATTTATATACTGGTACTACAGTTCCGGATTC AACGAAAAACGCACTCTCTCTTTTCTCCGATTTTTTTTTTTTCTTCTTCA TTTTTTTTCTTTTCCAACGGTCTTCTTCATGTTTATTATTTTCACTTTTC ATTGTCTTCTTCGTCATCACGTAGCGCCGAAGTCATTTTTCCTAGCCCTC CGTCGTCGTAAGCGTGCAAGCGTGAAATGCGCCGCTTGACCGGTGACAGC CACCCCCCCCCCCCCACCCCCTCGACAACATCGGCCGCGGATGGCGCCGA ACGTGTCACCAAACGGTGATGACCACCAACGATATCTGCGCGTGGACGCT GCGCCACCCCATCGCCTCCGACCCACCGACCGGTACAGTCCTACCTGGAG ACCATCCTTCCCAAGAAGGCAAACATCACGGTCGCCAAGTGCAAGGACCG CGTGTCGCTCATCTGCTGCGACGGAGTGCCGCTGTTCTTCCAGCAACGGG ACGGTTTCATCTATCCCACGCTTCGGGCTCTACACCAGTGTGAGTGGGTG AGGTGGGTGAGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig53875:194..1061-

>mRNA_H-elongata_contig53875.12748.1 ID=mRNA_H-elongata_contig53875.12748.1|Name=mRNA_H-elongata_contig53875.12748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig53875:194..1061- (Himanthalia elongata Himel1 dioecious)
AGGTTCTCGAAAGATGACGTGTCCTCCTCTAGCCAGGTGAAATCCTCGGT
TCAACGAGGCATTCGCGCAAAGCTCATCGAGCAGTTTCCCAACTGCGAGA
GGTTCTCGAAAGATGACGTGTCCTCCTCTAGCCAGGTGAAATCCTCGGTT
CAACGAGGCATTCGCGCAAAGCTCATCGAGCAGTTTCCCAACTGCGAGTC
CTACCTGGAGACCATCCTTCCCAAGAAGGCAAACATCACGGTCGCCAAGT
GCAAGGACCGCGTGTCGCTCATCTGCTGCGACGGAGTGCCGCTGTTCTTC
CAGCAACGGGACGGTTTCATCTATCCCACGCTTCGGGCTCTACACCAGTG
TGAGTGGGTGAGGTGGGTGAGTGAGTGATCCTACCTGGAGACCATCCTTC
CCAAGAAGGCAAACATCACGGTCGCCAAGTGCAAGGACCGCGTGTCGCTC
ATCTGCTGCGACGGAGTGCCGCTGTTCTTCCAGCAACGGGACGGTTTCAT
CTATCCCACGCTTCGGGCTCTACACCAGTGTGAGTGGGTGAGGTGGGTGA
GTGAGTGA
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