mRNA_H-elongata_contig53859.12745.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53859.12745.1
Unique NamemRNA_H-elongata_contig53859.12745.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: A0A6H5KYK6_9PHAE (Aldo_ket_red domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYK6_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 5.770e-112
Identity = 165/217 (76.04%), Postives = 187/217 (86.18%), Query Frame = 1
Query:    1 LSSSYRQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRNRHDVIVASKVAGRSERLTYLRDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMGYPRVASVQVNCKFL 651
            L   Y +LGKS+LVVS+ CLGTMTWGEQNSDEEAF+Q N+A+ EFGVNFID AEMYPVP K ETQGRT++ALGKWLK+  RH+V+VA+KVAGRS+RLT+LRD G+GTRV RK+IIEAVDKSLKRL TDYIDLLQIHWPDR VPLFG+NERYDV KE+DDD  FEEQL   DE+ R GKVR IGTSNDTPYG+ KMAQ+GER+GYPRVASVQ N   L
Sbjct:   75 LGMEYSRLGKSDLVVSKACLGTMTWGEQNSDEEAFEQCNMAFHEFGVNFIDAAEMYPVPPKPETQGRTEIALGKWLKSVARHNVVVATKVAGRSDRLTWLRDDGKGTRVNRKNIIEAVDKSLKRLDTDYIDLLQIHWPDRAVPLFGANERYDVAKERDDDTSFEEQLEVMDELCRAGKVRAIGTSNDTPYGITKMAQLGERLGYPRVASVQNNYNML 291          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: A0A835Z0T2_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T2_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.900e-94
Identity = 143/213 (67.14%), Postives = 171/213 (80.28%), Query Frame = 1
Query:   13 YRQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRNRHDVIVASKVAGRSERLTYLRDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMGYPRVASVQVNCKFL 651
            Y +LG S+LVVSEVCLGTMTWGEQNSDEEA+ QL LA DEFG+NFIDTAE+YPVP K ET GRTD A+ KWLK R R D+++ASKVAGR+  L +LR SGE TRVR+ DIIE+VDKSL+RLGTDY+DLLQ+HWPDR VPLFG    YD  +E+ DDIPFEEQL A +EV++ GKVR IG SN+TPYGV+K   + E++G PRV S+Q +   L
Sbjct:   55 YVKLGSSDLVVSEVCLGTMTWGEQNSDEEAYQQLKLAVDEFGINFIDTAELYPVPAKAETSGRTDKAIAKWLKGRKREDIVLASKVAGRAAHLGHLRSSGEPTRVRKADIIESVDKSLQRLGTDYLDLLQVHWPDRYVPLFGGG-IYDYEQERSDDIPFEEQLQALEEVIKAGKVRNIGLSNETPYGVMKFVTLAEQLGLPRVCSIQNSYSLL 266          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: A0A836CJ26_9STRA (NADP-dependent oxidoreductase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ26_9STRA)

HSP 1 Score: 289 bits (739), Expect = 2.900e-94
Identity = 137/213 (64.32%), Postives = 174/213 (81.69%), Query Frame = 1
Query:   13 YRQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRNRHDVIVASKVAGRSERLTYLRDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMGYPRVASVQVNCKFL 651
            Y +LG S+LVVSEVCLGTMTWGEQN+DEEA++QL++A+DEFG+NFIDTAEMYPV  + ETQGRTD+A+ KWLK RNR DV++ASKV GR +  TY+R SG+  RVRR DI+E+VD SL+RLGTDY+DLLQ+HWPDR VP+FG +E Y+  KE+DDD+ FE+QL   +EVV+ GKVR IG SN+TP+GV K  ++ ER+G PRV S+Q +   L
Sbjct:   20 YVKLGSSDLVVSEVCLGTMTWGEQNTDEEAYEQLSVAFDEFGINFIDTAEMYPVQPRAETQGRTDIAISKWLKDRNREDVVLASKVCGRQDTNTYIRKSGQPPRVRRADIVESVDASLQRLGTDYLDLLQVHWPDRYVPIFG-DESYNYAKERDDDVAFEDQLRGLEEVVKAGKVRHIGVSNETPFGVAKFVELSERLGLPRVCSIQNSYSLL 231          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: L1JG80_GUITC (Aldo_ket_red domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JG80_GUITC)

HSP 1 Score: 253 bits (646), Expect = 1.880e-80
Identity = 123/213 (57.75%), Postives = 160/213 (75.12%), Query Frame = 1
Query:   13 YRQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRNRHDVIVASKVAGRSERLTYLRDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMGYPRVASVQVNCKFL 651
            Y +LG S+L+VSEVCLGTMTWG+QN++EEA  QLN A+D+FGVNFIDTAE YP+P + ET G TD+ +GKW+K R R  VI+A+KV G+S RL + RD G+GTRV +K ++E+V+KSLKRL TDYIDLLQIHWPDR VPLFG N +YD+T E    +PFEEQL A +E+++ GK+R  G SN+TP+GV+    +    G  +  SVQ +   L
Sbjct:    3 YNKLGDSDLIVSEVCLGTMTWGKQNTEEEAIQQLNTAFDDFGVNFIDTAEGYPIPLQPETSGATDIIIGKWMKQRPRDQVILATKVCGKSSRLKWFRDDGQGTRVTKKQVVESVEKSLKRLQTDYIDLLQIHWPDRYVPLFGPN-KYDITLETPA-VPFEEQLEAMNELIQQGKIRHWGLSNETPFGVMAFVSLALEQGMAKPVSVQNSYSLL 213          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: A0A7S4EDL0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDL0_9STRA)

HSP 1 Score: 248 bits (634), Expect = 2.630e-78
Identity = 128/214 (59.81%), Postives = 161/214 (75.23%), Query Frame = 1
Query:   16 RQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRNRHD-VIVASKVAGRSERLTYLRDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGER-MGYPRVASVQVNCKFL 651
            RQLG S+LVVS+VCLGTMTWG+QN+ EE   QL+ A+DE+G+NF+DTAEMYPVPT+ ETQG+TD  +G WLK R R D V++ASK+ G SER+T++R  G GTRV   DI+E V+ SL+RLGTDYIDLLQIHWPDR VPLFGS   YD ++E++  +PF EQL A  ++V  GKVR IG SN+TPYGV +  Q  ER    PR+ S+Q +   L
Sbjct:   31 RQLGTSDLVVSDVCLGTMTWGKQNTLEEGVQQLDCAFDEYGLNFLDTAEMYPVPTEAETQGKTDETIGAWLKKRGRRDDVVLASKICGASERITWVRGDGRGTRVTEADIVEGVEGSLRRLGTDYIDLLQIHWPDRYVPLFGSG-TYDASQEREA-VPFVEQLQALKKLVDQGKVRHIGVSNETPYGVCRFIQEHERDASLPRICSIQNSYSLL 242          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: L1J0D5_GUITC (Aldo_ket_red domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1J0D5_GUITC)

HSP 1 Score: 246 bits (628), Expect = 2.580e-77
Identity = 124/216 (57.41%), Postives = 167/216 (77.31%), Query Frame = 1
Query:   13 YRQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRNRHDVIVASKVAGRSERLTYL--RDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVP-LFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMGYPRVASVQVNCKFL 651
            Y +LG S+L VS  CLGTMTWG+QN+ EE  +QLN+A+DEFGVNFIDTAEMYP+P K ETQG TD  + KWLKT+ R DV++A+KVAG S+R+T+L  RD G+G+RV RK+I+ +VD+SLKRL TDYIDLLQIHWPDR +  LFG+   YD++K  +  + FEEQL AFDE++R GKVR++G SN++P+GV+    + +++  P+V S+Q +   L
Sbjct:    3 YVKLGNSDLKVSRCCLGTMTWGQQNTMEEGVEQLNVAFDEFGVNFIDTAEMYPIPVKAETQGDTDRTIAKWLKTKRREDVVLATKVAGYSDRITWLPGRD-GKGSRVTRKEILTSVDESLKRLNTDYIDLLQIHWPDRHMGNLFGAPGTYDISKVYES-VSFEEQLRAFDELIRQGKVRYMGVSNESPFGVMNFHFLSKQLNLPQVVSIQNSYSLL 216          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: A0A7S2XWE6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE6_9STRA)

HSP 1 Score: 242 bits (618), Expect = 1.460e-75
Identity = 122/215 (56.74%), Postives = 169/215 (78.60%), Query Frame = 1
Query:   16 RQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTR--NRHDVIVASKVAGRSERLTYLRD-SGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMGYPRVASVQVNCKFL 651
            R+LG S+L+VSEVCLGTMTWG QN+DEE  +Q++  ++E G NF DTAEMYPVPT  ETQGRTD  + KW+++R  +R  +++A+KVAG S+R+T+L   +GEG+RV +K+II +VD+SLKRLGTDYIDLLQIHWPDR VPLFG++  Y++++E++    FEEQL    EV++ GKVR+IG SN+TPYGV+K  Q+ +++G PR+ S+Q +   L
Sbjct:   54 RKLGSSDLMVSEVCLGTMTWGVQNTDEEGAEQMDYYFNECGGNFFDTAEMYPVPTTAETQGRTDNCIRKWMQSRGIDRSKLVLATKVAGASDRITWLPGRNGEGSRVTKKEIITSVDESLKRLGTDYIDLLQIHWPDRYVPLFGTS-GYNISEEREA-TSFEEQLEGMQEVIQAGKVRYIGVSNETPYGVMKFCQLADQLGLPRICSIQNSYSLL 266          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: A0A7S4DXK6_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DXK6_9EUKA)

HSP 1 Score: 243 bits (620), Expect = 1.530e-75
Identity = 118/215 (54.88%), Postives = 160/215 (74.42%), Query Frame = 1
Query:   13 YRQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRN--RHDVIVASKVAGRSERLTYLRDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMGYPRVASVQVNCKFL 651
            Y +LG S+L+VSEVCLGTMTWGEQN+++E  +QL  A+D+ G+NF+DTAE YP+P K ETQGRTD  + +W+K  N  R  V++A+KV G S+ LT+ R +GEGT+V    IIE+VD SL+RL TDYIDLLQIHWPDR VPLFG+N RY + +E+D  IPFEEQ+ A  ++++ GK+R+ G SN+TPYG + M +  E++G P   S+Q +   L
Sbjct:   79 YNKLGNSDLMVSEVCLGTMTWGEQNTEDEGVEQLRTAFDDMGINFLDTAEAYPIPLKAETQGRTDRTIARWMKESNIARDKVVLATKVCGNSDGLTWFRKNGEGTKVSYDQIIESVDASLERLNTDYIDLLQIHWPDRYVPLFGAN-RYKIGEERDS-IPFEEQVRAMGDLIKQGKIRYWGLSNETPYGTMMMVKAAEKLGVPPPVSIQNSYSLL 291          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: F0XXK7_AURAN (Aldo_ket_red domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXK7_AURAN)

HSP 1 Score: 239 bits (610), Expect = 9.430e-75
Identity = 121/214 (56.54%), Postives = 160/214 (74.77%), Query Frame = 1
Query:   16 RQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRN-RHDVIVASKVAGRSERLTYLRDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMG-YPRVASVQVNCKFL 651
            RQLG S+LVVS+VCLGTMTWG+QN+ EE   QLN+A+D++G+NF+DTAEMYPVPT+ ETQG TD  +G+WL+ R  R DV++ASK+ G SER+T++RD G GTRV ++D+ E VD SLKRLGTDY+DLLQIHWPDR VP+FG++  YD + E++  + F EQL A  ++   GKVR  G SN+TPYGV + A    + G  P + S+Q +   L
Sbjct:   27 RQLGSSDLVVSDVCLGTMTWGKQNTLEEGVSQLNMAFDDYGINFLDTAEMYPVPTEAETQGATDKTIGEWLRRRGKRDDVVLASKICGASERITWVRDDGRGTRVTKRDMEEGVDASLKRLGTDYVDLLQIHWPDRYVPIFGAD-AYDASNEREY-VSFLEQLEAMKDLRDAGKVRHFGVSNETPYGVCQFAAEAAKDGDLPEICSIQNSYSLL 238          
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Match: A0A7S1GPK5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GPK5_HEMAN)

HSP 1 Score: 238 bits (607), Expect = 8.190e-74
Identity = 119/211 (56.40%), Postives = 160/211 (75.83%), Query Frame = 1
Query:   13 YRQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFIDTAEMYPVPTKKETQGRTDVALGKWLKTRNRHDVIVASKVAGRSERLTYL-RDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNERYDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGERMGYPRVASVQVNC 642
            + +LG S+LVVS  CLGTMTWG+QN++EE  +QLN+A+DE+GVNF+DTAEMYPVPTK ETQG TD  + +WLK R R  VI+ASKV G S+ +T+L R  GEG RV R+ I ++V+ SL+RLGTDYIDL+QIHWPDR VPLFG   +++ T  +D   PFEEQL  F  +  +GK+R++G SN+TP+GV+K  +  +R+  P++ S+Q NC
Sbjct:   62 FSKLGDSDLVVSRCCLGTMTWGQQNTEEEGVEQLNVAFDEYGVNFLDTAEMYPVPTKAETQGATDRTVARWLKGRQRDQVILASKVTGWSDNVTWLPRRGGEGARVTRQQIRDSVECSLERLGTDYIDLIQIHWPDRYVPLFGMM-KFNQTMVRDY-TPFEEQLEEFKLLQEEGKIRYVGVSNETPFGVMKFCEAADRLALPKIVSIQ-NC 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53859.12745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYK6_9PHAE5.770e-11276.04Aldo_ket_red domain-containing protein n=2 Tax=Ect... [more]
A0A835Z0T2_9STRA2.900e-9467.14NADP-dependent oxidoreductase domain-containing pr... [more]
A0A836CJ26_9STRA2.900e-9464.32NADP-dependent oxidoreductase domain-containing pr... [more]
L1JG80_GUITC1.880e-8057.75Aldo_ket_red domain-containing protein n=1 Tax=Gui... [more]
A0A7S4EDL0_9STRA2.630e-7859.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
L1J0D5_GUITC2.580e-7757.41Aldo_ket_red domain-containing protein n=2 Tax=Gem... [more]
A0A7S2XWE6_9STRA1.460e-7556.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DXK6_9EUKA1.530e-7554.88Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
F0XXK7_AURAN9.430e-7556.54Aldo_ket_red domain-containing protein n=1 Tax=Aur... [more]
A0A7S1GPK5_HEMAN8.190e-7456.40Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53859contigH-elongata_contig53859:932..3848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.4
Seed ortholog evalue4.9e-90
Seed eggNOG ortholog2880.D8LAT8
KEGG koko:K09338,ko:K14521
KEGG Pathwayko03008,map03008
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0667@1,KOG1575@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADP-dependent oxidoreductase domain
Ec32 orthologEc-27_006410.1
Exons6
Model size651
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53859.12745.1prot_H-elongata_contig53859.12745.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53859 932..3848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930877.4926867-CDS-H-elongata_contig53859:931..10811622930877.4926867-CDS-H-elongata_contig53859:931..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 932..1081 +
1691679608.1414392-CDS-H-elongata_contig53859:931..10811691679608.1414392-CDS-H-elongata_contig53859:931..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 932..1081 +
1622930877.518779-CDS-H-elongata_contig53859:2042..21591622930877.518779-CDS-H-elongata_contig53859:2042..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 2043..2159 +
1691679608.1519847-CDS-H-elongata_contig53859:2042..21591691679608.1519847-CDS-H-elongata_contig53859:2042..2159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 2043..2159 +
1622930877.5365348-CDS-H-elongata_contig53859:2618..27531622930877.5365348-CDS-H-elongata_contig53859:2618..2753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 2619..2753 +
1691679608.1609347-CDS-H-elongata_contig53859:2618..27531691679608.1609347-CDS-H-elongata_contig53859:2618..2753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 2619..2753 +
1622930877.5525978-CDS-H-elongata_contig53859:3027..30871622930877.5525978-CDS-H-elongata_contig53859:3027..3087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 3028..3087 +
1691679608.1731308-CDS-H-elongata_contig53859:3027..30871691679608.1731308-CDS-H-elongata_contig53859:3027..3087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 3028..3087 +
1622930877.5639386-CDS-H-elongata_contig53859:3322..33941622930877.5639386-CDS-H-elongata_contig53859:3322..3394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 3323..3394 +
1691679608.1819274-CDS-H-elongata_contig53859:3322..33941691679608.1819274-CDS-H-elongata_contig53859:3322..3394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 3323..3394 +
1622930877.5774152-CDS-H-elongata_contig53859:3731..38481622930877.5774152-CDS-H-elongata_contig53859:3731..3848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 3732..3848 +
1691679608.1927729-CDS-H-elongata_contig53859:3731..38481691679608.1927729-CDS-H-elongata_contig53859:3731..3848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53859 3732..3848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53859.12745.1

>prot_H-elongata_contig53859.12745.1 ID=prot_H-elongata_contig53859.12745.1|Name=mRNA_H-elongata_contig53859.12745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
LSSSYRQLGKSELVVSEVCLGTMTWGEQNSDEEAFDQLNLAYDEFGVNFI
DTAEMYPVPTKKETQGRTDVALGKWLKTRNRHDVIVASKVAGRSERLTYL
RDSGEGTRVRRKDIIEAVDKSLKRLGTDYIDLLQIHWPDRRVPLFGSNER
YDVTKEQDDDIPFEEQLAAFDEVVRDGKVRFIGTSNDTPYGVVKMAQIGE
RMGYPRVASVQVNCKFL
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mRNA from alignment at H-elongata_contig53859:932..3848+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53859.12745.1 ID=mRNA_H-elongata_contig53859.12745.1|Name=mRNA_H-elongata_contig53859.12745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2917bp|location=Sequence derived from alignment at H-elongata_contig53859:932..3848+ (Himanthalia elongata Himel1 dioecious)
CTTTCCTCCAGCTACCGTCAGCTAGGAAAGAGCGAGCTCGTCGTGAGCGA AGTGTGTCTGGGGACCATGACTTGGGGAGAGCAAAATTCTGACGAAGAGG CGTTCGACCAGCTGAACTTGGCGTACGACGAGTTCGGAGTGAACTTCATC GTGAGTGATCGTCGGTCATCGTCTCTCGTCTGGTTACTGCCGTGCGGAGA TTGATCGACGAGAGGGTGGATCGCCATTGATCGATCGATCGATAGATCCT TGGCTTGACAGGCATCGTCATTTTTCTACGTTATTGATTTTAAATTGTTT TATTGACATTTGCCAAGCATCAAGTACAACATACGGAATCAAAGTTTTGA AGTTAAAAAGCCCACCAGCCGCATGAAATTTGGTGAACATTCCGGTTAGA GTGGCCAACTGCTGGAAGATGTCAGCAACTGTATACACACAATATCTATA TATTTATTGGTATTTTTACTTTCTGCCGATGGGTGCTTCAACGTTGCCCA TAATGCCTGTTGTTCAAGGGGATCAAACCATATACCCCCGGTTGGTTAAC GCCTACGATTTTTAAATTCAGCACTCCTACACCTCGTAAACCGTACAATG GTTAGACATTGCTTGCTCCCGTCCTCTCTTTATGTTAGCTATAAAAACAA AAGGATCAATCCTGATGGGATTCGAACCCATAACTTCCTTACTAACAGGG TTACTATTAGTGTTACTATTAGTGTATTACTACGGGGTTGCGCATTAAAT TTTGGGGGCAAGTGTTTACACTATAAAGCTACCATATTACTATAGCATGA TTTTTTTTTGTGGTCAAATTTTCCTTGACTGAAATGATCTGAAGCGGGAA ATAGCACACTTATGAGTTTCTGTGACCTCGCTCTGGGGTTGCTCGATATG CGGCAGCCTCGGTGGCCTATTTACGTACATTTTCGTGTGCCACATCGTGG CTCGAGGTGTTGTTCAGGCGGTCACCGTTACAACCCAATCAATCCCTACA AGCAAATACGTCATGCCTTCCCTATATGCCGTACTAAGTATGTCGTTTTA AGAACATTAGCGGCTTCAGGCTCGTTCCCGCGCGCTCCCCAATTATCGCG CAAGAGCACAGGACACGGCGGAGATGTACCCCGTGCCCACGAAGAAAGAG ACTCAGGGGAGGACGGACGTGGCGTTGGGAAAGTGGCTGAAGACGCGCAA CAGGCACGACGTCATTGTCGCCTCCAAGGTGATGTCGCCTGTCAGCCCGT TAGTATCATAAACGTTGAAGATTATGGGCTTTCCCATGTGAGGGGGAATG TGAAGTGCGTGCGCCATGTCCTCCGGTCTGGTCTTTTTAAGTGTGCCAGA ACTTCGGTAAAGGCACCATTTATTCACGAGCGGGTAGAACCGCGCTATTC CGTCTAGAATGTGATTGGTTCGTGTGTTTGTTTTTATTGCCCGGTCATCC CTGCGCTGACAACGCTCTTCGTTGAACGTCACGAAAATAAGGTACCAAGA ACGTCGCTCGATTATCGATTGTCAGGCGTGCCGTCGCGCCAGCCTACCTC CCCAAGAGATTATATATCAACCCATTAAAGACTTTCAGCTAGATGAACGC GAGGAACCGTTTCTGTAGGGGACACCCGCCCTTCGACCGACCGCTCTGCC GTTACTCTCGGCCTACGGAACGCGCGCCATTTAACAGGTAGCCGGTCGGT CCGAACGACTGACCTACCTCAGGGACAGCGGCGAGGGTACCCGGGTTCGG CGAAAGGACATAATCGAGGCAGTGGACAAATCCCTCAAAAGACTGGGCAC CGACTATATTGACCTACTTCAGGTTCGATACAAACTGACTCTGTGATCAC ATTCGCGGCGGCTCGGGTTGCAATAAGATCAGGCCGTATTCACTCTCCCA CTTCCATGTCGAGGTATGAAAGCCAAGAAATTAGGATCCTTGATCCTTCC GCTCTGTTCGTGTTAAATTGAGTCAATGCTCGAACGTGAAACGCTATCAA ACGCCCTGCAATGGTTGTAAAAGGAAAACCAACCCCTAGCCTTGCCCGGT GAGCGTTTAACATTGTATATCGTATCTTGTATAATTGTCCTGGCAGATCC ATTGGCCGGATCGGCGCGTTCCACTCTTTGGATCCAACGAGCGCTATGAT GTGACGGTGAGTCTCTTGATGGAGAGGCGGTTGGGCGAACTGGCTTACTG CAAGATGGATTATATAATCCCTAGTTGTTTAGGATCGCGCGTTTGTCAAG TTATTCTGCACCCCAGGGTCACCAGGGGTGGTTTACGCCCCAGACGTCTC CTCCCCTCGATCCACCTTCCCGAATGTCCCCTCTTCCCCGCCTGTTGCCC TGTGCTGTGCCGTGCTGTGCCGTGCCGAGTTGTTCCAACAGAAAGAACAA GACGATGACATCCCTTTCGAAGAGCAGCTGGCTGCCTTCGACGAAGTCGT AAGAGACGGAAAGGTATATATGCAGGCTTCTTGCTGTTGAAATCGCGCGC ATATCCTGAATCAAGAGATAATGCAGCAGAAGCACCCATAACTATTAGAT CTGATACGAAGATGAGCAGTTAGTTCATTGGTATCCCGCCATAGACGATT CAGTACCTCTAGTATTGACGGGATCGTTTTCTGTTGCTTCTATACAGCCT GCGAAGCACTTTCCGCTGGTACACCCCCCCGTCCCCCCCGTCCCCCTTCA TGCCCGTGAAGAGCCGAAACATGTCATCGCTCCTTACCCAAACTACCTCG GCGGGGCTCGGCTGGATAATTTCTTTGGGAGGGCTACAAAATGCATACAG GTGCGGTTCATCGGGACGAGTAACGACACCCCGTACGGTGTGGTGAAAAT GGCGCAGATCGGGGAGAGGATGGGCTACCCTCGCGTGGCCTCCGTCCAGG TAAATTGTAAATTCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig53859:932..3848+

>mRNA_H-elongata_contig53859.12745.1 ID=mRNA_H-elongata_contig53859.12745.1|Name=mRNA_H-elongata_contig53859.12745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig53859:932..3848+ (Himanthalia elongata Himel1 dioecious)
CTTTCCTCCAGCTACCGTCAGCTAGGAAAGAGCGAGCTCGTCGTGAGCGA
AGTGTGTCTGGGGACCATGACTTGGGGAGAGCAAAATTCTGACGAAGAGG
CGTTCGACCAGCTGAACTTGGCGTACGACGAGTTCGGAGTGAACTTCATC
CTTTCCTCCAGCTACCGTCAGCTAGGAAAGAGCGAGCTCGTCGTGAGCGA
AGTGTGTCTGGGGACCATGACTTGGGGAGAGCAAAATTCTGACGAAGAGG
CGTTCGACCAGCTGAACTTGGCGTACGACGAGTTCGGAGTGAACTTCATC
GACACGGCGGAGATGTACCCCGTGCCCACGAAGAAAGAGACTCAGGGGAG
GACGGACGTGGCGTTGGGAAAGTGGCTGAAGACGCGCAACAGGCACGACG
TCATTGTCGCCTCCAAGGACACGGCGGAGATGTACCCCGTGCCCACGAAG
AAAGAGACTCAGGGGAGGACGGACGTGGCGTTGGGAAAGTGGCTGAAGAC
GCGCAACAGGCACGACGTCATTGTCGCCTCCAAGGTAGCCGGTCGGTCCG
AACGACTGACCTACCTCAGGGACAGCGGCGAGGGTACCCGGGTTCGGCGA
AAGGACATAATCGAGGCAGTGGACAAATCCCTCAAAAGACTGGGCACCGA
CTATATTGACCTACTTCAGGTAGCCGGTCGGTCCGAACGACTGACCTACC
TCAGGGACAGCGGCGAGGGTACCCGGGTTCGGCGAAAGGACATAATCGAG
GCAGTGGACAAATCCCTCAAAAGACTGGGCACCGACTATATTGACCTACT
TCAGATCCATTGGCCGGATCGGCGCGTTCCACTCTTTGGATCCAACGAGC
GCTATGATGTGACGATCCATTGGCCGGATCGGCGCGTTCCACTCTTTGGA
TCCAACGAGCGCTATGATGTGACGAAAGAACAAGACGATGACATCCCTTT
CGAAGAGCAGCTGGCTGCCTTCGACGAAGTCGTAAGAGACGGAAAGAAAG
AACAAGACGATGACATCCCTTTCGAAGAGCAGCTGGCTGCCTTCGACGAA
GTCGTAAGAGACGGAAAGGTGCGGTTCATCGGGACGAGTAACGACACCCC
GTACGGTGTGGTGAAAATGGCGCAGATCGGGGAGAGGATGGGCTACCCTC
GCGTGGCCTCCGTCCAGGTAAATTGTAAATTCCTCGTGCGGTTCATCGGG
ACGAGTAACGACACCCCGTACGGTGTGGTGAAAATGGCGCAGATCGGGGA
GAGGATGGGCTACCCTCGCGTGGCCTCCGTCCAGGTAAATTGTAAATTCC
TC
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