mRNA_H-elongata_contig53108.12642.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53108.12642.1
Unique NamemRNA_H-elongata_contig53108.12642.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.480e-25
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
            LHLAAFEGSVDT++LLL+AGASVN QDLDGWTPLHYAARNE  G  +VRAL AAGA+VDK ++RGRT
Sbjct:   90 LHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGGKVVVRALVAAGAEVDKANHRGRT 156          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A7RHQ3_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RHQ3_NEMVE)

HSP 1 Score: 55.8 bits (133), Expect = 5.350e-7
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
            LH   FEG++  V +L+  GA VN+Q+ +G+TPLHY A   SN  D+ + L    A  D  DY G+T
Sbjct:   51 LHQLVFEGNLKCVRMLVNLGADVNMQNEEGFTPLHYCAL--SNNFDMAKFLMKKSANPDIADYNGKT 115          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A0G8ATC3_9SYNE (Uncharacterized protein n=4 Tax=Candidatus Synechococcus spongiarum TaxID=431041 RepID=A0A0G8ATC3_9SYNE)

HSP 1 Score: 52.8 bits (125), Expect = 2.020e-6
Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 1
Query:   19 EGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
            E S D V   L  GA  N +D DGWTPLH+AAR +S   ++V+AL  AGA     D  GRT
Sbjct:    2 EASSDDVGRCLLEGAEPNARDEDGWTPLHFAAR-DSKTSEVVQALLDAGADPSARDGYGRT 61          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A345ZBG7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dependentiae bacterium (ex Spumella elongata CCAP 955/1) TaxID=2066483 RepID=A0A345ZBG7_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 3.490e-6
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAA---RNESNGGDLVRALAAAGAKVDKVDYRGRT 201
            LH A    + +   LL+ AGA+VN QD+DG+TPLH A     NE    D ++AL  AGA +   D  G+T
Sbjct:  171 LHFAIKYNAYNLAALLIGAGANVNAQDIDGYTPLHSAVIYHHNEDTTNDSIKALLKAGANLYIQDKEGKT 240          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A8J5WZK5_DIALT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5WZK5_DIALT)

HSP 1 Score: 54.7 bits (130), Expect = 7.110e-6
Identity = 49/140 (35.00%), Postives = 66/140 (47.14%), Query Frame = 1
Query:    1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRTGELGRKCFVHA-SRNVTHCSFVKKYHLKITL--MLSWTALHIAYLYRNGLATSELLEHGASTRIRDRHGNTAV 411
            LHLAA EG +  + LL+AA A VNV+D    TPL  A R+        R LAAA        +R  TG   + C+  A S  +    F  ++    T+    + TALH+A    N LA   L++  A    RDR G T +
Sbjct:  331 LHLAACEGQLKVIELLIAAQADVNVKDRFEGTPLADAIRH--------RKLAAAELLHRHGAFRDTTGLSEQLCYCAADSGRLEELEFHMRFKADFTVDNYEARTALHVAAGVGNVLAVQLLVDAKADVNARDRRGRTPL 462          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A8J6CBX3_DIALT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBX3_DIALT)

HSP 1 Score: 54.7 bits (130), Expect = 7.610e-6
Identity = 49/140 (35.00%), Postives = 66/140 (47.14%), Query Frame = 1
Query:    1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRTGELGRKCFVHA-SRNVTHCSFVKKYHLKITL--MLSWTALHIAYLYRNGLATSELLEHGASTRIRDRHGNTAV 411
            LHLAA EG +  + LL+AA A VNV+D    TPL  A R+        R LAAA        +R  TG   + C+  A S  +    F  ++    T+    + TALH+A    N LA   L++  A    RDR G T +
Sbjct: 1593 LHLAACEGQLKVIELLIAAQADVNVKDRFEGTPLADAIRH--------RKLAAAELLHRHGAFRDTTGLSEQLCYCAADSGRLEELEFHMRFKADFTVDNYEARTALHVAAGVGNVLAVQLLVDAKADVNARDRRGRTPL 1724          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A482R0P6_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R0P6_9EURY)

HSP 1 Score: 53.5 bits (127), Expect = 1.780e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   40 MLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRTGEL 210
            M ++ AG  V V D DGW+PLH+AAR+     D++RAL +AGA V+ V ++G T  L
Sbjct:    2 MEVITAGVDVTVVDEDGWSPLHWAARD--GRADVMRALVSAGANVNAVAHKGWTPPL 56          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: L1IC23_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IC23_GUITC)

HSP 1 Score: 52.8 bits (125), Expect = 2.110e-5
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    4 HLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGR 198
            HL A  G++  + LL+  GA V  +D++G+TPLHYAA+     GD+   L A GA+V   +  G+
Sbjct:  135 HLLALSGNIKALRLLVRNGAGVRARDVEGYTPLHYAAKR--GDGDMCDVLIALGARVTDANKLGQ 197          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A6A6SVC8_9PLEO (Ankyrin (Fragment) n=1 Tax=Lophiostoma macrostomum CBS 122681 TaxID=1314788 RepID=A0A6A6SVC8_9PLEO)

HSP 1 Score: 49.3 bits (116), Expect = 2.900e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   22 GSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
            GS ++   LL AGA  NV + DGW+ LH+AARN     D+++ L + GA+ +  D RG T
Sbjct:   10 GSTESAKKLLEAGADPNVFEHDGWSALHWAARNGHL--DVLKLLLSYGARTEVRDSRGHT 67          
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A183CEN0_GLOPA (ANK_REP_REGION domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183CEN0_GLOPA)

HSP 1 Score: 52.4 bits (124), Expect = 3.900e-5
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
            LH+AA +G    + +L  AGA VN QD +GWTPLH AA       D  R L   GA +D + + G T
Sbjct:  225 LHVAASKGYNKLIGMLSRAGADVNAQDFEGWTPLHAAAHWGER--DACRILMENGANLDALTHTGHT 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L369_9PHAE2.480e-2579.10Protein kinase domain-containing protein n=1 Tax=E... [more]
A7RHQ3_NEMVE5.350e-743.28Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A0G8ATC3_9SYNE2.020e-649.18Uncharacterized protein n=4 Tax=Candidatus Synecho... [more]
A0A345ZBG7_9BACT3.490e-642.86Uncharacterized protein n=1 Tax=Candidatus Depende... [more]
A0A8J5WZK5_DIALT7.110e-635.00Cyclic nucleotide-binding domain-containing protei... [more]
A0A8J6CBX3_DIALT7.610e-635.00Cyclic nucleotide-binding domain-containing protei... [more]
A0A482R0P6_9EURY1.780e-547.37Uncharacterized protein (Fragment) n=1 Tax=Methano... [more]
L1IC23_GUITC2.110e-540.00Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6A6SVC8_9PLEO2.900e-543.33Ankyrin (Fragment) n=1 Tax=Lophiostoma macrostomum... [more]
A0A183CEN0_GLOPA3.900e-543.28ANK_REP_REGION domain-containing protein n=1 Tax=G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53108contigH-elongata_contig53108:2539..2970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930866.8192458-CDS-H-elongata_contig53108:2538..29701622930866.8192458-CDS-H-elongata_contig53108:2538..2970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53108 2539..2970 +
1691679604.0462554-CDS-H-elongata_contig53108:2538..29701691679604.0462554-CDS-H-elongata_contig53108:2538..2970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53108 2539..2970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53108.12642.1prot_H-elongata_contig53108.12642.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53108 2539..2970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53108.12642.1

>prot_H-elongata_contig53108.12642.1 ID=prot_H-elongata_contig53108.12642.1|Name=mRNA_H-elongata_contig53108.12642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRA
LAAAGAKVDKVDYRGRTGELGRKCFVHASRNVTHCSFVKKYHLKITLMLS
WTALHIAYLYRNGLATSELLEHGASTRIRDRHGNTAVQMLQQYK
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mRNA from alignment at H-elongata_contig53108:2539..2970+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53108.12642.1 ID=mRNA_H-elongata_contig53108.12642.1|Name=mRNA_H-elongata_contig53108.12642.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig53108:2539..2970+ (Himanthalia elongata Himel1 dioecious)
TTACATCTTGCAGCTTTCGAGGGGTCGGTCGACACGGTCATGCTCCTGCT TGCGGCAGGGGCGTCCGTTAATGTCCAAGACCTCGACGGATGGACGCCAC TGCACTACGCGGCGCGCAACGAATCGAACGGGGGAGATCTCGTCCGGGCG TTGGCGGCGGCCGGGGCAAAAGTGGACAAAGTCGATTATCGTGGTAGAAC CGGTGAGCTAGGGAGAAAATGTTTCGTACATGCCTCGCGAAATGTGACGC ACTGTTCATTCGTGAAGAAGTACCACTTAAAAATTACATTGATGTTATCT TGGACAGCGCTTCACATCGCATATCTATACCGGAACGGCCTAGCAACGTC CGAGCTGCTCGAGCATGGGGCTTCCACCAGAATCAGGGACAGACACGGCA ATACAGCCGTGCAGATGCTCCAGCAGTACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig53108:2539..2970+

>mRNA_H-elongata_contig53108.12642.1 ID=mRNA_H-elongata_contig53108.12642.1|Name=mRNA_H-elongata_contig53108.12642.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig53108:2539..2970+ (Himanthalia elongata Himel1 dioecious)
TTACATCTTGCAGCTTTCGAGGGGTCGGTCGACACGGTCATGCTCCTGCT
TGCGGCAGGGGCGTCCGTTAATGTCCAAGACCTCGACGGATGGACGCCAC
TGCACTACGCGGCGCGCAACGAATCGAACGGGGGAGATCTCGTCCGGGCG
TTGGCGGCGGCCGGGGCAAAAGTGGACAAAGTCGATTATCGTGGTAGAAC
CGGTGAGCTAGGGAGAAAATGTTTCGTACATGCCTCGCGAAATGTGACGC
ACTGTTCATTCGTGAAGAAGTACCACTTAAAAATTACATTGATGTTATCT
TGGACAGCGCTTCACATCGCATATCTATACCGGAACGGCCTAGCAACGTC
CGAGCTGCTCGAGCATGGGGCTTCCACCAGAATCAGGGACAGACACGGCA
ATACAGCCGTGCAGATGCTCCAGCAGTACAAGTTACATCTTGCAGCTTTC
GAGGGGTCGGTCGACACGGTCATGCTCCTGCTTGCGGCAGGGGCGTCCGT
TAATGTCCAAGACCTCGACGGATGGACGCCACTGCACTACGCGGCGCGCA
ACGAATCGAACGGGGGAGATCTCGTCCGGGCGTTGGCGGCGGCCGGGGCA
AAAGTGGACAAAGTCGATTATCGTGGTAGAACCGGTGAGCTAGGGAGAAA
ATGTTTCGTACATGCCTCGCGAAATGTGACGCACTGTTCATTCGTGAAGA
AGTACCACTTAAAAATTACATTGATGTTATCTTGGACAGCGCTTCACATC
GCATATCTATACCGGAACGGCCTAGCAACGTCCGAGCTGCTCGAGCATGG
GGCTTCCACCAGAATCAGGGACAGACACGGCAATACAGCCGTGCAGATGC
TCCAGCAGTACAAG
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