mRNA_H-elongata_contig53108.12642.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.480e-25 Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query: 1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
LHLAAFEGSVDT++LLL+AGASVN QDLDGWTPLHYAARNE G +VRAL AAGA+VDK ++RGRT
Sbjct: 90 LHLAAFEGSVDTILLLLSAGASVNAQDLDGWTPLHYAARNEMGGKVVVRALVAAGAEVDKANHRGRT 156
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A7RHQ3_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RHQ3_NEMVE) HSP 1 Score: 55.8 bits (133), Expect = 5.350e-7 Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
LH FEG++ V +L+ GA VN+Q+ +G+TPLHY A SN D+ + L A D DY G+T
Sbjct: 51 LHQLVFEGNLKCVRMLVNLGADVNMQNEEGFTPLHYCAL--SNNFDMAKFLMKKSANPDIADYNGKT 115
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A0G8ATC3_9SYNE (Uncharacterized protein n=4 Tax=Candidatus Synechococcus spongiarum TaxID=431041 RepID=A0A0G8ATC3_9SYNE) HSP 1 Score: 52.8 bits (125), Expect = 2.020e-6 Identity = 30/61 (49.18%), Postives = 36/61 (59.02%), Query Frame = 1
Query: 19 EGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
E S D V L GA N +D DGWTPLH+AAR +S ++V+AL AGA D GRT
Sbjct: 2 EASSDDVGRCLLEGAEPNARDEDGWTPLHFAAR-DSKTSEVVQALLDAGADPSARDGYGRT 61
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A345ZBG7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dependentiae bacterium (ex Spumella elongata CCAP 955/1) TaxID=2066483 RepID=A0A345ZBG7_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 3.490e-6 Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAA---RNESNGGDLVRALAAAGAKVDKVDYRGRT 201
LH A + + LL+ AGA+VN QD+DG+TPLH A NE D ++AL AGA + D G+T
Sbjct: 171 LHFAIKYNAYNLAALLIGAGANVNAQDIDGYTPLHSAVIYHHNEDTTNDSIKALLKAGANLYIQDKEGKT 240
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A8J5WZK5_DIALT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5WZK5_DIALT) HSP 1 Score: 54.7 bits (130), Expect = 7.110e-6 Identity = 49/140 (35.00%), Postives = 66/140 (47.14%), Query Frame = 1
Query: 1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRTGELGRKCFVHA-SRNVTHCSFVKKYHLKITL--MLSWTALHIAYLYRNGLATSELLEHGASTRIRDRHGNTAV 411
LHLAA EG + + LL+AA A VNV+D TPL A R+ R LAAA +R TG + C+ A S + F ++ T+ + TALH+A N LA L++ A RDR G T +
Sbjct: 331 LHLAACEGQLKVIELLIAAQADVNVKDRFEGTPLADAIRH--------RKLAAAELLHRHGAFRDTTGLSEQLCYCAADSGRLEELEFHMRFKADFTVDNYEARTALHVAAGVGNVLAVQLLVDAKADVNARDRRGRTPL 462
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A8J6CBX3_DIALT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBX3_DIALT) HSP 1 Score: 54.7 bits (130), Expect = 7.610e-6 Identity = 49/140 (35.00%), Postives = 66/140 (47.14%), Query Frame = 1
Query: 1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRTGELGRKCFVHA-SRNVTHCSFVKKYHLKITL--MLSWTALHIAYLYRNGLATSELLEHGASTRIRDRHGNTAV 411
LHLAA EG + + LL+AA A VNV+D TPL A R+ R LAAA +R TG + C+ A S + F ++ T+ + TALH+A N LA L++ A RDR G T +
Sbjct: 1593 LHLAACEGQLKVIELLIAAQADVNVKDRFEGTPLADAIRH--------RKLAAAELLHRHGAFRDTTGLSEQLCYCAADSGRLEELEFHMRFKADFTVDNYEARTALHVAAGVGNVLAVQLLVDAKADVNARDRRGRTPL 1724
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A482R0P6_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R0P6_9EURY) HSP 1 Score: 53.5 bits (127), Expect = 1.780e-5 Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 40 MLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRTGEL 210
M ++ AG V V D DGW+PLH+AAR+ D++RAL +AGA V+ V ++G T L
Sbjct: 2 MEVITAGVDVTVVDEDGWSPLHWAARD--GRADVMRALVSAGANVNAVAHKGWTPPL 56
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: L1IC23_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IC23_GUITC) HSP 1 Score: 52.8 bits (125), Expect = 2.110e-5 Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 1
Query: 4 HLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGR 198
HL A G++ + LL+ GA V +D++G+TPLHYAA+ GD+ L A GA+V + G+
Sbjct: 135 HLLALSGNIKALRLLVRNGAGVRARDVEGYTPLHYAAKR--GDGDMCDVLIALGARVTDANKLGQ 197
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A6A6SVC8_9PLEO (Ankyrin (Fragment) n=1 Tax=Lophiostoma macrostomum CBS 122681 TaxID=1314788 RepID=A0A6A6SVC8_9PLEO) HSP 1 Score: 49.3 bits (116), Expect = 2.900e-5 Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 22 GSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
GS ++ LL AGA NV + DGW+ LH+AARN D+++ L + GA+ + D RG T
Sbjct: 10 GSTESAKKLLEAGADPNVFEHDGWSALHWAARNGHL--DVLKLLLSYGARTEVRDSRGHT 67
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Match: A0A183CEN0_GLOPA (ANK_REP_REGION domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183CEN0_GLOPA) HSP 1 Score: 52.4 bits (124), Expect = 3.900e-5 Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1
Query: 1 LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRALAAAGAKVDKVDYRGRT 201
LH+AA +G + +L AGA VN QD +GWTPLH AA D R L GA +D + + G T
Sbjct: 225 LHVAASKGYNKLIGMLSRAGADVNAQDFEGWTPLHAAAHWGER--DACRILMENGANLDALTHTGHT 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53108.12642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig53108.12642.1 >prot_H-elongata_contig53108.12642.1 ID=prot_H-elongata_contig53108.12642.1|Name=mRNA_H-elongata_contig53108.12642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp LHLAAFEGSVDTVMLLLAAGASVNVQDLDGWTPLHYAARNESNGGDLVRAback to top mRNA from alignment at H-elongata_contig53108:2539..2970+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig53108.12642.1 ID=mRNA_H-elongata_contig53108.12642.1|Name=mRNA_H-elongata_contig53108.12642.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig53108:2539..2970+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig53108:2539..2970+ >mRNA_H-elongata_contig53108.12642.1 ID=mRNA_H-elongata_contig53108.12642.1|Name=mRNA_H-elongata_contig53108.12642.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig53108:2539..2970+ (Himanthalia elongata Himel1 dioecious)back to top |