mRNA_H-elongata_contig53073.12634.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig53073.12634.1
Unique NamemRNA_H-elongata_contig53073.12634.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: A0A6H5L5G7_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5G7_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 1.140e-103
Identity = 161/205 (78.54%), Postives = 177/205 (86.34%), Query Frame = 1
Query:    1 KAFRDRAEALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            KA R+RAEALELRG+CYIHLGD+E+A NHFR+VLLDDPDN  C E HRRCR VVKKVEAGA LL G DV GA + WRAATALEPDNP  +GPLLLRIA+AH  AKDWAETKRAAQEC+N HPDGEVGA+AE+V+GDVH  AEEFQEAV+AY RAE KV E+G EVLDQAR KLKQAN+ LEQSKKK YYKILGV RNAD+AQIKK
Sbjct:  269 KAARERAEALELRGRCYIHLGDYELAGNHFRQVLLDDPDNGPCREQHRRCRAVVKKVEAGAELLSGGDVAGATKAWRAATALEPDNPALLGPLLLRIASAHLGAKDWAETKRAAQECLNTHPDGEVGAQAEIVMGDVHQAAEEFQEAVNAYARAETKVKEIGMEVLDQARAKLKQANILLEQSKKKQYYKILGVPRNADLAQIKK 473          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: A0A7S1UAC9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAC9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.060e-24
Identity = 72/201 (35.82%), Postives = 109/201 (54.23%), Query Frame = 1
Query:   13 DRAEALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            D  +AL+ RG CY  LG+ E A NH+RE L  DP++  C + H++ R ++K  + G +  +G D   A                +VGP L+ I+ A    K   +   AA+E +N     +  A+    +GDV +  E+++EAV ++GRA     E+ G    + ++KL +A V LEQSKK+NYYK LGV+R A   +IKK
Sbjct:  211 DNLDALQNRGACYYTLGEHEQAINHWREGLKRDPEHKGCKDAHKKLRKLMKAHDKGQKAFDGRDYPTAIXXXXXXXXXXXXXKNYVGPTLILISQAAVKGKALEDAADAARESINVLETADAWAQ----LGDVQVAREQYEEAVRSHGRAV----EIDGSDK-KFKEKLHKAEVALEQSKKRNYYKDLGVARTATAKEIKK 402          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: B8LBL2_THAPS (Dnaj-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBL2_THAPS)

HSP 1 Score: 108 bits (271), Expect = 2.010e-24
Identity = 73/205 (35.61%), Postives = 105/205 (51.22%), Query Frame = 1
Query:    1 KAFRDRAEALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            K F    EA +LRG+ Y  L + EMA  HFRE L  DP++  C E HR  + + KK + G    E    + A   W  A   +  +  FV P LL++  AH    +  +    A++    H D E        +GD  L  ++F EAV  + +A     +   +   Q +QK+++A V L+QSK+KNYYKILGV+RNA +  IKK
Sbjct:  131 KVFPKHIEAYQLRGESYWRLNEVEMAMKHFREGLKLDPEHKGCKEGHRLVKKITKKDKRGDEAFEKRQYKQAIEHWWEAMNNDMSHLHFVRPTLLKVVKAHTALGEHDQAILEARK----HVDNEETVEGLHALGDAQLAGDKFDEAVQTFSKAFEIAPD---DQKRQCQQKVEEAKVALKQSKEKNYYKILGVARNAKLKDIKK 328          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: A0A1Z5KA29_FISSO (DnaJ homolog subfamily C member 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KA29_FISSO)

HSP 1 Score: 108 bits (271), Expect = 3.560e-24
Identity = 73/198 (36.87%), Postives = 106/198 (53.54%), Query Frame = 1
Query:   22 EALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            EA  LRGQ Y  LG+ E A  H+RE L  DP++  C + H+  +T  KK + G         + A   W  A A++  +  F   L + +A A+  A D A   + AQ   +    GE    +   +G++   AE+++EAV  + RA  +V E   +    A+QKL+ A + L+QSK+KNYYKILGVSRNA   +IKK
Sbjct:  208 EAYHLRGQAYHRLGEHEQAILHYREGLKLDPEHKECKKGHKALKTTEKKKKKGDDAFNDGKYKEAVEFWLQAIAVDETHTAFARSLQIPLARAYSKAGDHARALKVAQ--AHVEDSGET-TESLWALGEIQQNAEKYEEAVRTFQRA-VEVTEDRVQEQQTAKQKLRDAQIALKQSKEKNYYKILGVSRNASKKEIKK 401          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: A0A7S4N0N3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0N3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.280e-22
Identity = 68/205 (33.17%), Postives = 104/205 (50.73%), Query Frame = 1
Query:    1 KAFRDRAEALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            KA  D  +A +LRG+ Y  LG+ +MA NHFRE L  DP++  C   H+  +T+ KK + G                            F+ P +L++  AH  A +  +  + A    N H +        + +GD  L AE++ +AV  + RA   +     E + + ++K+++A + L+QSK+KNYYKILGVSRNAD   IKK
Sbjct:  223 KAHSDHLDAYQLRGEAYFRLGEHDMAVNHFREALKLDPEHKGCKAGHKAVKTITKKEKRGDDAXXXXXXXXXXXXXXXXXXXXXXXVAFIRPTILKVIKAHSAAGEHDDAIKEA----NRHIELGESVDGILALGDAELGAEKYVDAVRTFRRA---LEFEPNERMQETKEKVQKAEIALKQSKEKNYYKILGVSRNADKKAIKK 420          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: A0A7S0CIM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIM9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.320e-22
Identity = 67/205 (32.68%), Postives = 109/205 (53.17%), Query Frame = 1
Query:    1 KAFRDRAEALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            K+  +  EA ELRGQ Y  LG+FE+A  H+R+ L  DP++  C   H+  +++ K  + G   +   ++E A   WR A ++  +   ++     +I  A+   +   E  + A   +      E      +V+GD  L+AE +QE+V+ + +A   + E   E    A++K  +A   L+QSK+KNYYKILGVSR A + +IKK
Sbjct:   50 KSHPNHLEAFELRGQAYTQLGEFEIAFTHYRQALKFDPEHKGCKAAHKYLKSITKSDKRGEDSVMKDELEEAISHWRKAISIAQNITPYIRETTKKIVKAYSRLQKHDEAIKEANMLIQM----EESIEHFLVLGDAELDAELYQESVNTFRKA-FDMAE-NDEDKRMAKEKYNKAETALKQSKEKNYYKILGVSRTATLKEIKK 248          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: A0A7S2R980_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R980_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.090e-22
Identity = 66/205 (32.20%), Postives = 106/205 (51.71%), Query Frame = 1
Query:    1 KAFRDRAEALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            K      EA +LRG+ Y+ LG+ + A  HFRE L  DP+++ C + H+  ++++KK + G       +   A   W  A  ++  +  FV P LL++  AH    +   +   A    N H +        +  GD  L  + F+EAV ++ +A         +   + +QKL +A V L+QSK+KNYYK+LGV+RNA+  +IKK
Sbjct:  214 KTHSKHLEAYQLRGEAYMRLGEHDTAVTHFREALKMDPEHSGCKKGHKFVKSIMKKHKRGDDAFSAGEYRKAIGFWWEAMNIDMTHLAFVRPCLLKVVKAHTALGEHDVSILEA----NKHIENMESVEGFLARGDAELAGDMFEEAVRSFSQA---TDFQPNDRQQECKQKLDKAKVALKQSKEKNYYKVLGVARNANKKEIKK 411          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: B7FV17_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FV17_PHATC)

HSP 1 Score: 96.3 bits (238), Expect = 1.250e-19
Identity = 68/197 (34.52%), Postives = 98/197 (49.75%), Query Frame = 1
Query:   22 EALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIK 612
            EA  LRG  Y  LG+ + A  HFRE L  DP+ A C + H+  + + KK   G       D E A+  +  A  L+P +  F  P+ L++   +       +    AQ+ V      E        + +    A+ +++AV  + RA  +V   G E   +A QKLK A V L+QSK+KNYYKILGVSR+A   +IK
Sbjct:  220 EAYCLRGSAYHRLGEHDQAVLHFREGLKLDPEQADCKKGHKSVKALEKKKAKGDEAYAAGDFESASGHYERAMMLDPTHHAFNRPVQLQLVQTYSKLGQHKKAMDTAQKYVEELESLE----GLWALANAQQAADSYEDAVRTFQRA-VEVAPDGSEQEREANQKLKNAQVALKQSKEKNYYKILGVSRSATAKEIK 411          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: A0A6S8ZH32_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZH32_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.480e-19
Identity = 69/205 (33.66%), Postives = 103/205 (50.24%), Query Frame = 1
Query:    1 KAFRDRAEALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            K++    EA +LRG+ Y  LG+ + A NHFRE L  DP++  C + H+  +T++KK +                           +  FV P LL++  AH    +  +    A + VN     E G  A   +GD  + A++F EAV  + RA     E   +    A++K+++A V L+QSK+KNYYKILGV RNA   +IKK
Sbjct:  220 KSYPSHIEAYQLRGEAYFRLGEHDTAVNHFREGLKLDPEHKGCKKGHKAIKTLLKKEKRXXXXXXXXXXXXXXXXXXXXXXXXISHLAFVRPALLKVVKAHTKLGEHDKAIEEAHKHVNNMESVE-GLHA---LGDAQIAADKFDEAVRTFHRAFEIAPE---DEKRNAQEKVREAEVALKQSKEKNYYKILGVQRNAASKEIKK 417          
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Match: A0A7S1BWU5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWU5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.580e-19
Identity = 64/198 (32.32%), Postives = 95/198 (47.98%), Query Frame = 1
Query:   22 EALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRCRTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAAHRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHAYGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADVAQIKK 615
            +A +LRG  Y  LG+ EM+ NH+RE L  DP++A C   H+  + + KK                           P++  FV P L + A  H            AQ  +    +   G    +++G+V L AE+F++AV  Y +   +  +      D  ++K++QA   L+QSK KNYYKILGV RNAD  +IKK
Sbjct:  214 DAYQLRGDAYFWLGEHEMSKNHYREALRSDPEHAGCKNGHKLIKKIDKKAXXXXXXXXXXXXXXXXXXXXXXXGYVPNHLNFVRPTLQKKARLHSKIGQHDRAIEIAQNLLEVDDESADGY---VLLGEVQLAAEKFEDAVRTYKQGYEETED------DVFKEKIQQAEAALKQSKTKNYYKILGVPRNADSKEIKK 402          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig53073.12634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5G7_9PHAE1.140e-10378.54J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7S1UAC9_9STRA1.060e-2435.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
B8LBL2_THAPS2.010e-2435.61Dnaj-like protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A1Z5KA29_FISSO3.560e-2436.87DnaJ homolog subfamily C member 3 n=2 Tax=Fistulif... [more]
A0A7S4N0N3_9STRA1.280e-2233.17Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0CIM9_9STRA3.320e-2232.68Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2R980_9STRA8.090e-2232.20Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B7FV17_PHATC1.250e-1934.52Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6S8ZH32_9STRA2.480e-1933.66Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S1BWU5_9STRA5.580e-1932.32Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig53073contigH-elongata_contig53073:289..3516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.1
Seed ortholog evalue2.5e-83
Seed eggNOG ortholog2880.D7G291
KEGG koko:K09523,ko:K09527
KEGG Pathwayko04141,ko05164,map04141,map05164
EggNOG free text desc.positive regulation of translation initiation in response to endoplasmic reticulum stress
EggNOG OGsCOG0484@1,KOG0624@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein 40 like protein
Ec32 orthologEc-16_002030.1
Exons5
Model size621
Cds size621
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig53073.12634.1prot_H-elongata_contig53073.12634.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig53073 289..3516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930865.860868-CDS-H-elongata_contig53073:288..3841622930865.860868-CDS-H-elongata_contig53073:288..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 289..384 +
1691679603.6536965-CDS-H-elongata_contig53073:288..3841691679603.6536965-CDS-H-elongata_contig53073:288..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 289..384 +
1622930865.8795428-CDS-H-elongata_contig53073:1370..15621622930865.8795428-CDS-H-elongata_contig53073:1370..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 1371..1562 +
1691679603.663124-CDS-H-elongata_contig53073:1370..15621691679603.663124-CDS-H-elongata_contig53073:1370..1562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 1371..1562 +
1622930865.901407-CDS-H-elongata_contig53073:2152..22391622930865.901407-CDS-H-elongata_contig53073:2152..2239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 2153..2239 +
1691679603.6705537-CDS-H-elongata_contig53073:2152..22391691679603.6705537-CDS-H-elongata_contig53073:2152..2239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 2153..2239 +
1622930865.9136767-CDS-H-elongata_contig53073:2838..30331622930865.9136767-CDS-H-elongata_contig53073:2838..3033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 2839..3033 +
1691679603.6779969-CDS-H-elongata_contig53073:2838..30331691679603.6779969-CDS-H-elongata_contig53073:2838..3033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 2839..3033 +
1622930866.0222607-CDS-H-elongata_contig53073:3465..35161622930866.0222607-CDS-H-elongata_contig53073:3465..3516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 3466..3516 +
1691679603.6857069-CDS-H-elongata_contig53073:3465..35161691679603.6857069-CDS-H-elongata_contig53073:3465..3516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig53073 3466..3516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig53073.12634.1

>prot_H-elongata_contig53073.12634.1 ID=prot_H-elongata_contig53073.12634.1|Name=mRNA_H-elongata_contig53073.12634.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
KAFRDRAEALELRGQCYIHLGDFEMAANHFREVLLDDPDNASCMELHRRC
RTVVKKVEAGARLLEGADVEGAAREWRAATALEPDNPMFVGPLLLRIAAA
HRDAKDWAETKRAAQECVNAHPDGEVGARAEMVIGDVHLEAEEFQEAVHA
YGRAEAKVGEVGGEVLDQARQKLKQANVQLEQSKKKNYYKILGVSRNADV
AQIKKV*
back to top

mRNA from alignment at H-elongata_contig53073:289..3516+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig53073.12634.1 ID=mRNA_H-elongata_contig53073.12634.1|Name=mRNA_H-elongata_contig53073.12634.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3228bp|location=Sequence derived from alignment at H-elongata_contig53073:289..3516+ (Himanthalia elongata Himel1 dioecious)
AAGGCTTTCCGAGATCGTGCGGAGGCGTTAGAGTTGCGAGGACAGTGCTA CATCCACCTTGGGGACTTCGAGATGGCTGCCAATCATTTCCGAGAGGTGC GTGACTGGTGTCGCGGGAAGCAGAAATATCTTAGTACGAAACACGTTAAT CACCCTATTAATACTACAGTTAGGCATAAGGTATGGGATGGGATGGGATG GGATGGGATGGGATGGGGTGTAAAGTAAAAAGGGCAAGAGCACAGGCAGT ACTTGCATGCTGTAGCCGTAATGTTTGTGCTCGTCATACTTGCGTGCTGC AGGACGGTCGGTGGAACCGTCGGGTAGCTGTCGCACCAGTGCGCCTGAAG CAAATGAAGTATGTTCGTGTCGAGACGAAGATGTTCCCATCCACTCGCCC AACCCACGATCGAGCCCCATTTGTTGGTGTTGTTGTTGTTGCGAGGCACG AGATGGTGCCGCCACCCTTATCGTCCCGTCCCGTCCCGTCCCGATATGTT GGTGCTTCTCTGGCTGCGTCGATGGGATCTAGAGGCCTCAGGAGGAGATG CGGGGGGGCTGGGGAGGGGCGTTCTGAAGTGTTGCACACCTTCGCTGTTA GACCGTTAGACCATTACCATTGACCACGCGTCCACCACGCGTGTTGGGGA GAACGGACTACGATTGTCCCCACCGGGGCACGAGTCGCGCTAGCTTTTGT ATTTTATCTTTTCCTTCGCCACGATCGTTTGTGTCGTGTGTCGCGTTTCG TGCTACTTGAAAAAATCAGCATAACATGCCCTCCCCCCCCCCCCCCCCCC CCCCCCCCCCTCTCCAGAACATCCCATACAAAATATTATCATCCAAAACG ACAGTGCAGGACAGCACACAATGGCATACAGTATCTTGTAGTTGTGTCAA AATTAAGATAGCCACGAGAAGTAAGCCACAGGCAACATGAATGGGTGCTC TATCACATCAAAAGGTCAAGAGAATCGCCTTTGAGATACAATACTGGTAC ACCACATTTTTTCTTCTTCCTATCCATGATTTTCTGGTTTATATATATAC ATATATATTATCTCTCTCTTCCTCTTTCTCAGGTGCTCCTTGATGATCCC GATAACGCCTCTTGTATGGAGTTACACCGCCGTTGTCGAACAGTAGTGAA GAAGGTGGAGGCCGGGGCTAGGCTGCTGGAGGGGGCCGACGTGGAGGGGG CGGCAAGGGAGTGGAGGGCCGCTACGGCGCTGGAGCCGGACAATCCCATG TTTGTGGGGCCGCTGCTCCTGCGGGTGAGCAGTCAGTCTCGTTTCGTTCG TGCCATCACATCCCGCTTTGTCCCAATTTTTTAAGTCTTGTCCCGCCTTG CCCCATCCCGTCGAGTCTTGCCTCGTTGTCTGCCGAGTTATCTCTACTCT TATCCCATCCCTTCCCACGTAATTCCATCCGTTCCGCCTCTTCCCCTGTT GTCCTGTCTTAGTCCATCTTGGTGCACGTCGTTTTTCCCACCGTGTATCG AACAATAGTAATTACGTGTCTTTCTGTCAAATAGCCGCCGGCATTTTTTA AAAATATTTTTGGGCATATATATATATTAATATAGGAAAAAAATCAAAAA CCAACGAGCAAATTAGCAAAAATTATCCAGGAAGACTATGACGTCCCTAA CAGAATGGAGAAAGAATGTGCAGAATGATCACTGTGTAGTGCCGCCCGCT CACGGTAGAAAACATTATGGTATGGTATGGTATGGTGTGGCCTGATACAC AATGTTTCAAGCGAACATGTATTTGTTCTTTGCTCTTCCTCAACCGTTAT CGTTTACCTGTTCTGTACCTGCGCGTTGCGCGTGCCAAACAACCGGCCGA TCGGAGGGAAACAGATCGCGGCGGCGCATCGCGACGCGAAGGACTGGGCG GAGACGAAGCGCGCTGCCCAGGAGTGCGTGAACGCTCATCCCGACGGGGA GGTGAGAGGAAAGGATAAAGGATGATGACGGCCCAAGAGAGAGATTAAAA AAGGAAAAATATATATAGAGTAAATATAGGGAAGGGAGGGGAAGAGAAGA CCCCCCCCCCCCAAAAAAAAAAGAAAATATAAAAGAAAGGGGTTGCTTAT CGATCTAAGTTTCGTAATGTGTGTGTGTATATGAGAGAAAGAGAGGGAGG AAAGAAGAGTAATCTCTAGTATTTTGTATTTTCAAGTGGTGTTTTCTCTG TGTCTATTTCTCTCTGTCTGTTTGAGAATGTGTCATACGTCATGTGATAG GCCAGCAGGTTTCTCAGGAAAAAAACAGTTGTTGGGAATCTTGTGATTGA TATCTGTTTGGTTGGATTATCGTTGGCCTAGCAATAGCAATAGCAATACT GTAGTAGGGTATTATGCGTGTGGGGGCGGGAGAGGCATTGGAATGAAAGG TTTACCGTGGGAATGAGAGAATTGTTGTCGGAAGAAGCTGGAACGATACA GTTTCCGAGCCCTACGGCGACGAAGACTATGACCGCAAAGCGCGCCCTGA AGGAGCTCTCTGGTTTGTCGATTCGGGTGACGGGATGGGGCGAGACGCAG GTGGGAGCCAGGGCGGAGATGGTAATCGGAGATGTCCACCTCGAGGCTGA GGAGTTCCAGGAGGCGGTGCACGCCTACGGGAGGGCGGAAGCGAAAGTTG GCGAGGTGGGGGGCGAGGTGCTGGACCAGGCGCGACAGAAGCTGAAGCAG GCGAACGTGCAGCTCGAACAGAGCAAGAAGAAAAACTATTACAAGGTCAA TACCACAGTAGATATATTTTATAACAAAATTAAGACAGCGATAGAGCGCC CCCAAGAATTGGGAATGAGTCCGATCACCCCATTTAATTATTAGTATTTT GTATCAGTGTTTTTTTAGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTG TATCTGGTGAAATGAGAGGGTTGTTCGCGACTTGCTCGCGGCGACTGTTG CCCGCTAACAAGCGCAGCGAGGGAGAAAAGATAGAGCGGGGGTGCCTCCC TCCCTCCCTCCCTCCAAGTGACGTCACCACTAGACCTCGCGCTGCTGTGC TGTGGCCGGTATTTTTTACACAAACTTGATCGCATACCCGAACCCCGTGC CCCATCCCCTCGCTTTGCACGTATGCCTCACGGATGAAAACCCCTTATTT GGGCGTGGGGCCTGGCGGGGTTAACAGATCCTAGGAGTCTCCCGAAATGC TGACGTGGCGCAAATTAAGAAGGTATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig53073:289..3516+

>mRNA_H-elongata_contig53073.12634.1 ID=mRNA_H-elongata_contig53073.12634.1|Name=mRNA_H-elongata_contig53073.12634.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig53073:289..3516+ (Himanthalia elongata Himel1 dioecious)
AAGGCTTTCCGAGATCGTGCGGAGGCGTTAGAGTTGCGAGGACAGTGCTA
CATCCACCTTGGGGACTTCGAGATGGCTGCCAATCATTTCCGAGAGAAGG
CTTTCCGAGATCGTGCGGAGGCGTTAGAGTTGCGAGGACAGTGCTACATC
CACCTTGGGGACTTCGAGATGGCTGCCAATCATTTCCGAGAGGTGCTCCT
TGATGATCCCGATAACGCCTCTTGTATGGAGTTACACCGCCGTTGTCGAA
CAGTAGTGAAGAAGGTGGAGGCCGGGGCTAGGCTGCTGGAGGGGGCCGAC
GTGGAGGGGGCGGCAAGGGAGTGGAGGGCCGCTACGGCGCTGGAGCCGGA
CAATCCCATGTTTGTGGGGCCGCTGCTCCTGCGGGTGCTCCTTGATGATC
CCGATAACGCCTCTTGTATGGAGTTACACCGCCGTTGTCGAACAGTAGTG
AAGAAGGTGGAGGCCGGGGCTAGGCTGCTGGAGGGGGCCGACGTGGAGGG
GGCGGCAAGGGAGTGGAGGGCCGCTACGGCGCTGGAGCCGGACAATCCCA
TGTTTGTGGGGCCGCTGCTCCTGCGGATCGCGGCGGCGCATCGCGACGCG
AAGGACTGGGCGGAGACGAAGCGCGCTGCCCAGGAGTGCGTGAACGCTCA
TCCCGACGGGGAGATCGCGGCGGCGCATCGCGACGCGAAGGACTGGGCGG
AGACGAAGCGCGCTGCCCAGGAGTGCGTGAACGCTCATCCCGACGGGGAG
GTGGGAGCCAGGGCGGAGATGGTAATCGGAGATGTCCACCTCGAGGCTGA
GGAGTTCCAGGAGGCGGTGCACGCCTACGGGAGGGCGGAAGCGAAAGTTG
GCGAGGTGGGGGGCGAGGTGCTGGACCAGGCGCGACAGAAGCTGAAGCAG
GCGAACGTGCAGCTCGAACAGAGCAAGAAGAAAAACTATTACAAGGTGGG
AGCCAGGGCGGAGATGGTAATCGGAGATGTCCACCTCGAGGCTGAGGAGT
TCCAGGAGGCGGTGCACGCCTACGGGAGGGCGGAAGCGAAAGTTGGCGAG
GTGGGGGGCGAGGTGCTGGACCAGGCGCGACAGAAGCTGAAGCAGGCGAA
CGTGCAGCTCGAACAGAGCAAGAAGAAAAACTATTACAAGATCCTAGGAG
TCTCCCGAAATGCTGACGTGGCGCAAATTAAGAAGGTATGAATCCTAGGA
GTCTCCCGAAATGCTGACGTGGCGCAAATTAAGAAGGTATGA
back to top