mRNA_H-elongata_contig52698.12583.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A6H5K560_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K560_9PHAE) HSP 1 Score: 208 bits (530), Expect = 2.290e-65 Identity = 101/114 (88.60%), Postives = 109/114 (95.61%), Query Frame = 3
Query: 3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGDPKGGLAAV 344
VALLKLAQLPYNGA+SLFIRVLLNKKYALPYKVID+LVDHFM+F ETRVLPVLWHQSLLVFAQRYRGDITRA K+RLKELLKAQ+HHQITPE+RRQLFMGGCRG+PKG LA+
Sbjct: 177 VALLKLAQLPYNGATSLFIRVLLNKKYALPYKVIDSLVDHFMTFTTETRVLPVLWHQSLLVFAQRYRGDITRADKNRLKELLKAQQHHQITPEVRRQLFMGGCRGEPKGSLAST 290
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: D7FWC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC2_ECTSI) HSP 1 Score: 208 bits (529), Expect = 6.980e-64 Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 3
Query: 3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGDPKGGLAAV 344
VALLKLAQLPYNGA+SLFIRVLLNKKYALPYKVID+LVDHFM+F ETRVLPVLWHQSLLVFAQRYRGDITRA KDRLKELLKAQ+HHQITPE+RRQLFMG CRG+PKG LA+
Sbjct: 289 VALLKLAQLPYNGATSLFIRVLLNKKYALPYKVIDSLVDHFMTFTTETRVLPVLWHQSLLVFAQRYRGDITRADKDRLKELLKAQQHHQITPEVRRQLFMGSCRGEPKGSLAST 402
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A835ZE25_9STRA (Bystin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE25_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.190e-41 Identity = 74/106 (69.81%), Postives = 87/106 (82.08%), Query Frame = 3
Query: 3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
VALLKLA++PY+GA+S+F+RVLLNKKYALP++VI ALVDHF FV ETR LPVLWHQSLL F QRYRGDIT K+R+KELL+AQ H IT E+RR+LF R D
Sbjct: 349 VALLKLAEMPYSGATSMFVRVLLNKKYALPHRVIAALVDHFSRFVGETRELPVLWHQSLLAFVQRYRGDITARDKERIKELLRAQPHRLITDEVRRELFGAAARAD 454
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A7S2CAR2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAR2_9STRA) HSP 1 Score: 141 bits (356), Expect = 7.570e-40 Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 3
Query: 3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGDPKGGLAAV 344
VALLKLA++PY G +SLFIRVLLNKKYALP++VIDALVDHF + + LPVLWHQSLLVFAQRY+ D++ K+RLK L KAQ HHQITPEIRR+LF R + G
Sbjct: 123 VALLKLAEMPYAGPTSLFIRVLLNKKYALPHRVIDALVDHFCD-LGDGPELPVLWHQSLLVFAQRYKADVSLEQKERLKTLFKAQFHHQITPEIRRELFSTASRAEAAAGTGTA 235
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: S8DZP0_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DZP0_9LAMI) HSP 1 Score: 137 bits (345), Expect = 2.030e-39 Identity = 65/106 (61.32%), Postives = 84/106 (79.25%), Query Frame = 3
Query: 3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
VALLKLA++ Y G +S FI++L+ KKYALPY+VIDALVDHFM F ETR +PV+WHQSLL FAQRY+ +IT+ GK L+ L++ Q+H+ +TPEI R+L G RGD
Sbjct: 2 VALLKLAEMEYCGTTSYFIKLLIEKKYALPYRVIDALVDHFMKFYDETRQMPVIWHQSLLAFAQRYKNEITKEGKGNLRGLVERQQHNLVTPEILRELDSGRSRGD 107
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A194S3J2_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194S3J2_RHOGW) HSP 1 Score: 139 bits (351), Expect = 1.650e-38 Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 3
Query: 6 ALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
ALLKLA++ Y G +S+FIRVLL+KKYALPYKV+DALV HF+ F R+TR +PVLWHQS LVF QRY+ D+T KD L E+L+ Q HHQITPEIRR++ RG+
Sbjct: 174 ALLKLAEMEYTGPNSVFIRVLLDKKYALPYKVVDALVFHFLRFKRDTRQMPVLWHQSFLVFVQRYKSDLTAEQKDALLEVLRYQVHHQITPEIRREIVHSVARGE 278
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: L8GEG0_ACACA (Bystin, putative (Fragment) n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEG0_ACACA) HSP 1 Score: 137 bits (344), Expect = 6.060e-37 Identity = 66/106 (62.26%), Postives = 87/106 (82.08%), Query Frame = 3
Query: 3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
VALLK+AQ+ Y+GA+S+FIRVLL+KKY+LPY+VIDALVDHF+ F++E R+LPVLWHQ+LLVF QRY+ D+T K ++K+L+K Q HH IT EI R+L RG+
Sbjct: 234 VALLKIAQMEYSGANSIFIRVLLDKKYSLPYRVIDALVDHFVGFIKEERMLPVLWHQALLVFVQRYKEDMTPNQKAQVKQLIKHQGHHTITGEILRELNESKSRGE 339
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A5C5G4N3_9BASI (Bystin-domain-containing protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G4N3_9BASI) HSP 1 Score: 139 bits (349), Expect = 6.380e-37 Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 3
Query: 6 ALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
ALLKLA++ Y G +S+FIRVLL+KKYALPYKV+DALV HF+ F R+TR +PVLWHQS LVF QRY+ D+T KD L ++L+ Q HHQITPEIRR++ RG+
Sbjct: 325 ALLKLAEMEYTGPNSVFIRVLLDKKYALPYKVVDALVFHFLRFKRDTRQMPVLWHQSFLVFVQRYKSDLTSEQKDALLDVLRFQTHHQITPEIRREIVHSVARGE 429
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A109FEI6_9BASI (Bystin-domain-containing protein n=2 Tax=unclassified Rhodotorula TaxID=2640191 RepID=A0A109FEI6_9BASI) HSP 1 Score: 138 bits (348), Expect = 6.820e-37 Identity = 68/105 (64.76%), Postives = 83/105 (79.05%), Query Frame = 3
Query: 6 ALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
ALLKLA++ Y G +SLFIRVLL+KKYALPYKV+DALV HF+ F R+ R +PVLWHQ+ LVFAQRY+ D+T KD L E+L+ Q HHQITPEIRR+L RG+
Sbjct: 307 ALLKLAEMEYTGPNSLFIRVLLDKKYALPYKVVDALVFHFLRFKRDQRQMPVLWHQAFLVFAQRYKADLTPEQKDALLEVLRFQTHHQITPEIRRELQHSVTRGE 411
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A2S5BBU4_9BASI (Uncharacterized protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BBU4_9BASI) HSP 1 Score: 138 bits (347), Expect = 1.090e-36 Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 3
Query: 6 ALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGDPKGGLAAVS 347
ALLKLA++ Y G +SLFIRVLL+KKYALPYKV+DALV HF+ F R+ R +PVLWHQS LVFAQRY+ D+T KD L E+L+ Q H+QITPEIRR+L RG+ + +AA S
Sbjct: 315 ALLKLAEMEYTGPNSLFIRVLLDKKYALPYKVVDALVFHFIRFKRDQRQMPVLWHQSFLVFAQRYKADLTPEQKDALLEVLRFQTHYQITPEIRRELQHSVVRGEEE--MAAAS 426 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52698.12583.1 >prot_H-elongata_contig52698.12583.1 ID=prot_H-elongata_contig52698.12583.1|Name=mRNA_H-elongata_contig52698.12583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp PWPCSSWHSCRTTGHRRCSSASCSTRSTRCPTRLSTPWWTTLCPSSERRGback to top mRNA from alignment at H-elongata_contig52698:1175..2926+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52698.12583.1 ID=mRNA_H-elongata_contig52698.12583.1|Name=mRNA_H-elongata_contig52698.12583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1752bp|location=Sequence derived from alignment at H-elongata_contig52698:1175..2926+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52698:1175..2926+ >mRNA_H-elongata_contig52698.12583.1 ID=mRNA_H-elongata_contig52698.12583.1|Name=mRNA_H-elongata_contig52698.12583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig52698:1175..2926+ (Himanthalia elongata Himel1 dioecious)back to top |