mRNA_H-elongata_contig52698.12583.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig52698.12583.1
Unique NamemRNA_H-elongata_contig52698.12583.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A6H5K560_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K560_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.290e-65
Identity = 101/114 (88.60%), Postives = 109/114 (95.61%), Query Frame = 3
Query:    3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGDPKGGLAAV 344
            VALLKLAQLPYNGA+SLFIRVLLNKKYALPYKVID+LVDHFM+F  ETRVLPVLWHQSLLVFAQRYRGDITRA K+RLKELLKAQ+HHQITPE+RRQLFMGGCRG+PKG LA+ 
Sbjct:  177 VALLKLAQLPYNGATSLFIRVLLNKKYALPYKVIDSLVDHFMTFTTETRVLPVLWHQSLLVFAQRYRGDITRADKNRLKELLKAQQHHQITPEVRRQLFMGGCRGEPKGSLAST 290          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: D7FWC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC2_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 6.980e-64
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 3
Query:    3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGDPKGGLAAV 344
            VALLKLAQLPYNGA+SLFIRVLLNKKYALPYKVID+LVDHFM+F  ETRVLPVLWHQSLLVFAQRYRGDITRA KDRLKELLKAQ+HHQITPE+RRQLFMG CRG+PKG LA+ 
Sbjct:  289 VALLKLAQLPYNGATSLFIRVLLNKKYALPYKVIDSLVDHFMTFTTETRVLPVLWHQSLLVFAQRYRGDITRADKDRLKELLKAQQHHQITPEVRRQLFMGSCRGEPKGSLAST 402          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A835ZE25_9STRA (Bystin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE25_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.190e-41
Identity = 74/106 (69.81%), Postives = 87/106 (82.08%), Query Frame = 3
Query:    3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
            VALLKLA++PY+GA+S+F+RVLLNKKYALP++VI ALVDHF  FV ETR LPVLWHQSLL F QRYRGDIT   K+R+KELL+AQ H  IT E+RR+LF    R D
Sbjct:  349 VALLKLAEMPYSGATSMFVRVLLNKKYALPHRVIAALVDHFSRFVGETRELPVLWHQSLLAFVQRYRGDITARDKERIKELLRAQPHRLITDEVRRELFGAAARAD 454          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A7S2CAR2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CAR2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 7.570e-40
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 3
Query:    3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGDPKGGLAAV 344
            VALLKLA++PY G +SLFIRVLLNKKYALP++VIDALVDHF   + +   LPVLWHQSLLVFAQRY+ D++   K+RLK L KAQ HHQITPEIRR+LF    R +   G    
Sbjct:  123 VALLKLAEMPYAGPTSLFIRVLLNKKYALPHRVIDALVDHFCD-LGDGPELPVLWHQSLLVFAQRYKADVSLEQKERLKTLFKAQFHHQITPEIRRELFSTASRAEAAAGTGTA 235          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: S8DZP0_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DZP0_9LAMI)

HSP 1 Score: 137 bits (345), Expect = 2.030e-39
Identity = 65/106 (61.32%), Postives = 84/106 (79.25%), Query Frame = 3
Query:    3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
            VALLKLA++ Y G +S FI++L+ KKYALPY+VIDALVDHFM F  ETR +PV+WHQSLL FAQRY+ +IT+ GK  L+ L++ Q+H+ +TPEI R+L  G  RGD
Sbjct:    2 VALLKLAEMEYCGTTSYFIKLLIEKKYALPYRVIDALVDHFMKFYDETRQMPVIWHQSLLAFAQRYKNEITKEGKGNLRGLVERQQHNLVTPEILRELDSGRSRGD 107          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A194S3J2_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194S3J2_RHOGW)

HSP 1 Score: 139 bits (351), Expect = 1.650e-38
Identity = 67/105 (63.81%), Postives = 83/105 (79.05%), Query Frame = 3
Query:    6 ALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
            ALLKLA++ Y G +S+FIRVLL+KKYALPYKV+DALV HF+ F R+TR +PVLWHQS LVF QRY+ D+T   KD L E+L+ Q HHQITPEIRR++     RG+
Sbjct:  174 ALLKLAEMEYTGPNSVFIRVLLDKKYALPYKVVDALVFHFLRFKRDTRQMPVLWHQSFLVFVQRYKSDLTAEQKDALLEVLRYQVHHQITPEIRREIVHSVARGE 278          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: L8GEG0_ACACA (Bystin, putative (Fragment) n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEG0_ACACA)

HSP 1 Score: 137 bits (344), Expect = 6.060e-37
Identity = 66/106 (62.26%), Postives = 87/106 (82.08%), Query Frame = 3
Query:    3 VALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
            VALLK+AQ+ Y+GA+S+FIRVLL+KKY+LPY+VIDALVDHF+ F++E R+LPVLWHQ+LLVF QRY+ D+T   K ++K+L+K Q HH IT EI R+L     RG+
Sbjct:  234 VALLKIAQMEYSGANSIFIRVLLDKKYSLPYRVIDALVDHFVGFIKEERMLPVLWHQALLVFVQRYKEDMTPNQKAQVKQLIKHQGHHTITGEILRELNESKSRGE 339          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A5C5G4N3_9BASI (Bystin-domain-containing protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G4N3_9BASI)

HSP 1 Score: 139 bits (349), Expect = 6.380e-37
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 3
Query:    6 ALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
            ALLKLA++ Y G +S+FIRVLL+KKYALPYKV+DALV HF+ F R+TR +PVLWHQS LVF QRY+ D+T   KD L ++L+ Q HHQITPEIRR++     RG+
Sbjct:  325 ALLKLAEMEYTGPNSVFIRVLLDKKYALPYKVVDALVFHFLRFKRDTRQMPVLWHQSFLVFVQRYKSDLTSEQKDALLDVLRFQTHHQITPEIRREIVHSVARGE 429          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A109FEI6_9BASI (Bystin-domain-containing protein n=2 Tax=unclassified Rhodotorula TaxID=2640191 RepID=A0A109FEI6_9BASI)

HSP 1 Score: 138 bits (348), Expect = 6.820e-37
Identity = 68/105 (64.76%), Postives = 83/105 (79.05%), Query Frame = 3
Query:    6 ALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGD 320
            ALLKLA++ Y G +SLFIRVLL+KKYALPYKV+DALV HF+ F R+ R +PVLWHQ+ LVFAQRY+ D+T   KD L E+L+ Q HHQITPEIRR+L     RG+
Sbjct:  307 ALLKLAEMEYTGPNSLFIRVLLDKKYALPYKVVDALVFHFLRFKRDQRQMPVLWHQAFLVFAQRYKADLTPEQKDALLEVLRFQTHHQITPEIRRELQHSVTRGE 411          
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Match: A0A2S5BBU4_9BASI (Uncharacterized protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BBU4_9BASI)

HSP 1 Score: 138 bits (347), Expect = 1.090e-36
Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 3
Query:    6 ALLKLAQLPYNGASSLFIRVLLNKKYALPYKVIDALVDHFMSFVRETRVLPVLWHQSLLVFAQRYRGDITRAGKDRLKELLKAQEHHQITPEIRRQLFMGGCRGDPKGGLAAVS 347
            ALLKLA++ Y G +SLFIRVLL+KKYALPYKV+DALV HF+ F R+ R +PVLWHQS LVFAQRY+ D+T   KD L E+L+ Q H+QITPEIRR+L     RG+ +  +AA S
Sbjct:  315 ALLKLAEMEYTGPNSLFIRVLLDKKYALPYKVVDALVFHFIRFKRDQRQMPVLWHQSFLVFAQRYKADLTPEQKDALLEVLRFQTHYQITPEIRRELQHSVVRGEEE--MAAAS 426          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52698.12583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K560_9PHAE2.290e-6588.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWC2_ECTSI6.980e-6488.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZE25_9STRA1.190e-4169.81Bystin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2CAR2_9STRA7.570e-4064.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
S8DZP0_9LAMI2.030e-3961.32Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A194S3J2_RHOGW1.650e-3863.81Uncharacterized protein n=1 Tax=Rhodotorula gramin... [more]
L8GEG0_ACACA6.060e-3762.26Bystin, putative (Fragment) n=2 Tax=Acanthamoeba c... [more]
A0A5C5G4N3_9BASI6.380e-3762.86Bystin-domain-containing protein n=1 Tax=Rhodotoru... [more]
A0A109FEI6_9BASI6.820e-3764.76Bystin-domain-containing protein n=2 Tax=unclassif... [more]
A0A2S5BBU4_9BASI1.090e-3662.28Uncharacterized protein n=1 Tax=Rhodotorula taiwan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig52698contigH-elongata_contig52698:1175..2926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size351
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig52698.12583.1prot_H-elongata_contig52698.12583.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig52698 1175..2924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930860.7677124-CDS-H-elongata_contig52698:1174..12721622930860.7677124-CDS-H-elongata_contig52698:1174..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52698 1175..1272 +
1691679601.4947157-CDS-H-elongata_contig52698:1174..12721691679601.4947157-CDS-H-elongata_contig52698:1174..1272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52698 1175..1272 +
1622930860.783252-CDS-H-elongata_contig52698:1908..20521622930860.783252-CDS-H-elongata_contig52698:1908..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52698 1909..2052 +
1691679601.5058398-CDS-H-elongata_contig52698:1908..20521691679601.5058398-CDS-H-elongata_contig52698:1908..2052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52698 1909..2052 +
1622930860.8041348-CDS-H-elongata_contig52698:2818..29241622930860.8041348-CDS-H-elongata_contig52698:2818..2924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52698 2819..2924 +
1691679601.5139573-CDS-H-elongata_contig52698:2818..29241691679601.5139573-CDS-H-elongata_contig52698:2818..2924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig52698 2819..2924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig52698.12583.1

>prot_H-elongata_contig52698.12583.1 ID=prot_H-elongata_contig52698.12583.1|Name=mRNA_H-elongata_contig52698.12583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
PWPCSSWHSCRTTGHRRCSSASCSTRSTRCPTRLSTPWWTTLCPSSERRG
CYPCSGTRASSSSLSVIAGISLERARIDSRSFSKRRSTIRSHQKFGVSFS
WEGAGATPRAALLLCP
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mRNA from alignment at H-elongata_contig52698:1175..2926+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig52698.12583.1 ID=mRNA_H-elongata_contig52698.12583.1|Name=mRNA_H-elongata_contig52698.12583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1752bp|location=Sequence derived from alignment at H-elongata_contig52698:1175..2926+ (Himanthalia elongata Himel1 dioecious)
CCGTGGCCTTGCTCAAGCTGGCACAGCTGCCGTACAACGGGGCATCGTCG CTGTTCATCCGCGTCCTGCTCAACAAGAAGTACGCGCTGCCCTACAAGGT TGGCCGTTGTCCCTTCAGGAGGGCAAAATAGACAATACGTGCATGCACAC CCCTCGATCGATCTCTACCTCTTAGGACTCTATTAGGGATAGAGGCAGGG GCGGTGGTAGAGCCCCATTGCCTTTGTGCTTTGATAGAGGGGCGGGGTGA TTCTCGCTCGTGTCGTGTGTAAGGCGTTCATTCCCGTCAAGGGTTTCCAT TTGGAAGGAAGGGGGACGGGGGGGACCCAACTGGCGTTGCAAAGCGGCAC CCAACACCAACTTAAAAACAAATGGCTGCTGTGGGCTGACAATAGAGGTC TATTGTAGTCTAGTTTCTAGTATGTAGGGTGTAGTGTGGCACATATTATC CGCGAATTGGAGCGAAGTCGTGGAGGCTTCGACAAAGAGTTTGGTGCTTG TATAATTTGAGATCGTATTTGTCATCTTACATGATATGATATATATATAT GGTATATTGCGGCATCATATATATTTATTTTTGGGGGGTGGGGACTGTTT TGAAATTGAAACGAAAGTAATAGCAAGAAATTCATCGCCGAAGCGGGTGT CCTAGAGAAGGCGCGGGAGTTCCGATTTAAAAGAAAAGCATCTTTTATTT CTCCCGTCTGCCAACGGTTGACGTTACGCTCCAGGTTATCGACGCCCTGG TGGACCACTTTATGTCCTTCGTCCGAGAGACGCGGGTGCTACCCGTGCTC TGGCACCAGAGCCTCCTCGTCTTCGCTCAGCGTTATCGCGGGGATATCAC TCGAGCGGGCAAGGATCGACTCAAGGAGGTGGGAGAGCGACTTTGCTTGG CTGAAACCGTTAACGGCGGGAGTACGGAGGGGGGACGCTTACATCGCCGC GGTACTGATCTGTTTCTCGTAGAGAAATTTAATGGTATATTTTCTTGCAT GTTTTATGTCCTTTTACTTCCTTTTGGAGAAATCCGCAGCGGTGTATATC GTCGAGAACCCTAAAAAGGCCTTACAAGGATGGTAGTCCTTGGTCTACAA AGTAATCGAAATACGTAGTGACGCATTTGTGCTTCTAGAGCCTAGTATTT AATAGTTCACTTGTTTTTGTTTATTTTTTTTTGCATTTTTTTGTTTCACT TTCATCTTTTTATCTTTGATCCTCTTTTGTCCCAGGCGAGATATCTCGTG TTAAACTCGGACGATCGCCCTCCGGCAGCAAGACTTGCCCCCCCTTTTTT TATGACTTCCGATAACATATCTTGGGTTTTCATACCATGGAGGCGTCTGG ACGTACCATATGATATTTATAGCTATTGAGAACTTTCCCGGGATTTTTTC TTTTTAGAAGCTATTGATTGAACGGCGTGGGTATTCATATAATGGAGGCG TCTTGATGTGTCCCTTCGTAACAACGGCTTGCACGCTCATTCGGGGGAAT TCGTTTAAGCTTCACGTTCCGACCTTCATCGTTCATCGTTTATCCCCGCC ATTCGTTGTGTCTCCCGCCTCAAACTGCTGCCCGGATGGTCTCCATCTTC GCGAACGCTCATTGAACACGCGTGTCTCCGTTCCGTTCTGTCAGCTTCTC AAAGCGCAGGAGCACCATCAGATCACACCAGAAATTCGGCGTCAGCTTTT CATGGGAGGGTGCAGGGGCGACCCCAAGGGCGGCCTTGCTGCTGTGTCCA CA
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Coding sequence (CDS) from alignment at H-elongata_contig52698:1175..2926+

>mRNA_H-elongata_contig52698.12583.1 ID=mRNA_H-elongata_contig52698.12583.1|Name=mRNA_H-elongata_contig52698.12583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig52698:1175..2926+ (Himanthalia elongata Himel1 dioecious)
CCGTGGCCTTGCTCAAGCTGGCACAGCTGCCGTACAACGGGGCATCGTCG
CTGTTCATCCGCGTCCTGCTCAACAAGAAGTACGCGCTGCCCTACAAGCC
GTGGCCTTGCTCAAGCTGGCACAGCTGCCGTACAACGGGGCATCGTCGCT
GTTCATCCGCGTCCTGCTCAACAAGAAGTACGCGCTGCCCTACAAGGTTA
TCGACGCCCTGGTGGACCACTTTATGTCCTTCGTCCGAGAGACGCGGGTG
CTACCCGTGCTCTGGCACCAGAGCCTCCTCGTCTTCGCTCAGCGTTATCG
CGGGGATATCACTCGAGCGGGCAAGGATCGACTCAAGGAGGTTATCGACG
CCCTGGTGGACCACTTTATGTCCTTCGTCCGAGAGACGCGGGTGCTACCC
GTGCTCTGGCACCAGAGCCTCCTCGTCTTCGCTCAGCGTTATCGCGGGGA
TATCACTCGAGCGGGCAAGGATCGACTCAAGGAGCTTCTCAAAGCGCAGG
AGCACCATCAGATCACACCAGAAATTCGGCGTCAGCTTTTCATGGGAGGG
TGCAGGGGCGACCCCAAGGGCGGCCTTGCTGCTGTGTCCACTTCTCAAAG
CGCAGGAGCACCATCAGATCACACCAGAAATTCGGCGTCAGCTTTTCATG
GGAGGGTGCAGGGGCGACCCCAAGGGCGGCCTTGCTGCTGTGTCCA
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