mRNA_H-elongata_contig115963.1256.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig115963.1256.1
Unique NamemRNA_H-elongata_contig115963.1256.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: D7FQJ3_ECTSI (Gamma hydroxybutyrate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQJ3_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.290e-41
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGRHADDDFCAVIEALRSKP 252
            ILGQGAMASPM+ALKGPLM K+DYS+NFPLKHAQKDMRFAL LGDK  QALP+ AAANAEY+RAK  HADDDFCAV+EALRSKP
Sbjct:  257 ILGQGAMASPMVALKGPLMAKKDYSSNFPLKHAQKDMRFALGLGDKAAQALPVAAAANAEYLRAKKNHADDDFCAVVEALRSKP 340          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: A0A835YH89_9STRA (2-hydroxy-3-oxopropionate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH89_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.720e-31
Identity = 58/84 (69.05%), Postives = 66/84 (78.57%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGRHADDDFCAVIEALRSKP 252
            ILG GAMA+PM  LKGPLM    Y+ NFPLKHAQKDMRFAL LG+   Q LP+ AAANAEY+RA  +  DDDFCAVIEAL+S+P
Sbjct:  214 ILGLGAMANPMFKLKGPLMESGSYAPNFPLKHAQKDMRFALGLGEATAQPLPLAAAANAEYLRALPKFGDDDFCAVIEALKSRP 297          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: A0A7S2V669_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V669_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.250e-24
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGRHADDDFCAVIEALR 243
            IL  GAMA+PM  LKGP M K  Y  NFPLKHAQKDMRFAL LGD++   LP  AAAN EY+RA+  HADDDF AV+EA+R
Sbjct:  241 ILDLGAMANPMFKLKGPTMIKGAYPANFPLKHAQKDMRFALKLGDELGAPLPAAAAANEEYIRARV-HADDDFAAVMEAIR 320          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: A0A7S2C990_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C990_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.660e-23
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGRHADDDFCAVIEALR 243
            +L  G M+SP+I LKGP + K+ Y T FPLKHAQKDMRFALALGD++ QALP+ AAAN  + RA+    DDDF AV EALR
Sbjct:   19 VLELGVMSSPLIKLKGPNLVKRKYPTQFPLKHAQKDMRFALALGDEVGQALPLAAAANESFKRARRDCGDDDFSAVYEALR 99          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: D8U8A6_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U8A6_VOLCA)

HSP 1 Score: 95.9 bits (237), Expect = 4.550e-22
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGR-HADDDFCAVIEALRSK 249
            ILG GAMA+PM ALKGP +  ++Y   FPLKH QKD+R ALALGD + Q LP+ AAAN  +  AK + HAD+DF AV EA + K
Sbjct:  212 ILGLGAMANPMFALKGPAIMSRNYPPAFPLKHQQKDLRLALALGDALNQPLPVAAAANEAFKNAKAKGHADEDFAAVYEATQQK 295          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: A0A383VW99_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VW99_TETOB)

HSP 1 Score: 93.6 bits (231), Expect = 4.050e-21
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGR-HADDDFCAVIEALR 243
            +LG GAMA+PM ALKGP + ++ Y   FPLKH QKDMR ALALGD + Q LP+ AAAN  Y +AK + +AD DF AV EA +
Sbjct:  218 VLGLGAMANPMFALKGPALQQRQYPPAFPLKHQQKDMRLALALGDALDQPLPVAAAANEAYKQAKSKGYADADFAAVYEATQ 299          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: A0A7S0WG56_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WG56_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 4.390e-21
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGR-HADDDFCAVIEALR 243
            +L  GAMA+PM ALKGP + K+++   FPLKH QKDMR ALALGD++ Q LPI AA+N  Y +AK   HAD+DF A+  A R
Sbjct:  205 VLSLGAMANPMFALKGPAVMKREFPPAFPLKHQQKDMRLALALGDELNQPLPIAAASNERYKQAKAAGHADNDFAAIYNATR 286          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: A0A7S2F2B8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F2B8_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 5.080e-21
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGRHADDDFCAVIEALRSK 249
            IL +G M  P++ LKGP +  + Y T+FPLKHAQKD+RFALALGD++ Q+LPI + AN  ++RAK  H D DF AV EA+ S+
Sbjct:  139 ILKKGVMGCPLVTLKGPNIVSRTYDTHFPLKHAQKDLRFALALGDEVGQSLPICSVANECFVRAKPVHGDSDFSAVYEAMMSQ 221          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: A0A250X3K1_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3K1_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 6.550e-21
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGR-HADDDFCAVIEALR 243
            ++G GA+ASP++A+KGP M  ++Y+  FPLKH QKDMR ALALGD++ Q+LP+ AAAN ++  A+ R H D+D  AV EA +
Sbjct:  211 VMGIGALASPLVAMKGPAMMSKNYAPAFPLKHQQKDMRLALALGDQLGQSLPVAAAANEQFKVARARGHGDEDIAAVYEATK 292          
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Match: A0A7J7Q5T7_9CHLO (NAD binding domain of 6-phosphogluconate dehydrogenase-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q5T7_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 8.030e-21
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 ILGQGAMASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAAANAEYMRAKGR-HADDDFCAVIEALRS 246
            +LG GAMA+PM  LKGP + ++ Y   FPLKH QKDMR ALALGD + QALP+ AAAN  Y +AK + + D DF AV EA ++
Sbjct:  219 VLGLGAMANPMFGLKGPALMQRQYPPAFPLKHQQKDMRLALALGDSLNQALPVAAAANEAYKQAKSKGYGDADFAAVYEATQA 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig115963.1256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQJ3_ECTSI1.290e-4184.52Gamma hydroxybutyrate dehydrogenase n=2 Tax=Ectoca... [more]
A0A835YH89_9STRA4.720e-3169.052-hydroxy-3-oxopropionate reductase n=1 Tax=Tribon... [more]
A0A7S2V669_9STRA3.250e-2466.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2C990_9STRA4.660e-2362.96Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D8U8A6_VOLCA4.550e-2258.33Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A383VW99_TETOB4.050e-2158.54Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S0WG56_9CHLO4.390e-2157.32Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A7S2F2B8_9STRA5.080e-2155.42Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A250X3K1_9CHLO6.550e-2153.66Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7J7Q5T7_9CHLO8.030e-2156.63NAD binding domain of 6-phosphogluconate dehydroge... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig115963contigH-elongata_contig115963:1421..1894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.2e-30
Seed eggNOG ortholog2880.D7FQJ3
KEGG rclassRC00042,RC00087
KEGG koko:K18121
KEGG ReactionR00465,R09281
KEGG Pathwayko00630,ko00650,ko01100,ko01120,ko01200,map00630,map00650,map01100,map01120,map01200
EggNOG free text desc.3hydroxyisobutyrate dehydrogenase
EggNOG OGsCOG2084@1,KOG0409@2759
EC1.1.1.79
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig115963.1256.1prot_H-elongata_contig115963.1256.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig115963 1421..1876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.2681828-CDS-H-elongata_contig115963:1420..15371622929672.2681828-CDS-H-elongata_contig115963:1420..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115963 1421..1537 -
1691679114.1015854-CDS-H-elongata_contig115963:1420..15371691679114.1015854-CDS-H-elongata_contig115963:1420..1537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115963 1421..1537 -
1622929672.2826598-CDS-H-elongata_contig115963:1756..18761622929672.2826598-CDS-H-elongata_contig115963:1756..1876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115963 1757..1876 -
1691679114.1146636-CDS-H-elongata_contig115963:1756..18761691679114.1146636-CDS-H-elongata_contig115963:1756..1876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig115963 1757..1876 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.295119-UTR-H-elongata_contig115963:1876..18941622929672.295119-UTR-H-elongata_contig115963:1876..1894Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115963 1877..1894 -
1691679114.1270273-UTR-H-elongata_contig115963:1876..18941691679114.1270273-UTR-H-elongata_contig115963:1876..1894Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig115963 1877..1894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig115963.1256.1

>prot_H-elongata_contig115963.1256.1 ID=prot_H-elongata_contig115963.1256.1|Name=mRNA_H-elongata_contig115963.1256.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MASPMIALKGPLMNKQDYSTNFPLKHAQKDMRFALALGDKMLQALPITAA
ANAEYMRAKGRHADDDFCAVIEALRSKP*
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mRNA from alignment at H-elongata_contig115963:1421..1894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig115963.1256.1 ID=mRNA_H-elongata_contig115963.1256.1|Name=mRNA_H-elongata_contig115963.1256.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at H-elongata_contig115963:1421..1894- (Himanthalia elongata Himel1 dioecious)
ATCCTTGGGCAAGGTGCGATGGCAAGTCCGATGATTGCTCTCAAGGGTCC CTTGATGAACAAGCAGGACTACTCGACGAACTTCCCTCTCAAGCACGCGC AGAAGGACATGAGGTTCGCGCTCGCTCTAGGCGATAAGGTGTGTGCCGTG GGGCCGAAGCGGGGATCGAATCTAGTACAGTACAAATAACTCAGGTCAAA CGTATGTGCCGGAGGAAAAAGCGACCCGGAAAATTCCTCCTACATTCTGT CCGTTCGACGATCGGAAGCAAGAGAAAAAATATCGACCGTCAATCCTCAC AGTGCGCGTCCTCAGTGGTCGCGTCGACCTTGGTTTGTCTCCTTTTTTTT CTGACAGATGTTGCAAGCGCTGCCTATAACTGCCGCGGCGAACGCGGAGT ACATGCGCGCGAAAGGGCGACACGCGGATGACGACTTCTGCGCTGTGATC GAAGCGCTCCGCTCCAAGCCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig115963:1421..1894-

>mRNA_H-elongata_contig115963.1256.1 ID=mRNA_H-elongata_contig115963.1256.1|Name=mRNA_H-elongata_contig115963.1256.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig115963:1421..1894- (Himanthalia elongata Himel1 dioecious)
ATGGCAAGTCCGATGATTGCTCTCAAGGGTCCCTTGATGAACAAGCAGGA
CTACTCGACGAACTTCCCTCTCAAGCACGCGCAGAAGGACATGAGGTTCG
CGCTCGCTCTAGGCGATAAGATGGCAAGTCCGATGATTGCTCTCAAGGGT
CCCTTGATGAACAAGCAGGACTACTCGACGAACTTCCCTCTCAAGCACGC
GCAGAAGGACATGAGGTTCGCGCTCGCTCTAGGCGATAAGATGTTGCAAG
CGCTGCCTATAACTGCCGCGGCGAACGCGGAGTACATGCGCGCGAAAGGG
CGACACGCGGATGACGACTTCTGCGCTGTGATCGAAGCGCTCCGCTCCAA
GCCGTAAATGTTGCAAGCGCTGCCTATAACTGCCGCGGCGAACGCGGAGT
ACATGCGCGCGAAAGGGCGACACGCGGATGACGACTTCTGCGCTGTGATC
GAAGCGCTCCGCTCCAAGCCGTAA
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