mRNA_H-elongata_contig52536.12558.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig52536.12558.1 vs. uniprot
Match: D8LQQ0_ECTSI (GPI ethanolamine phosphate transferase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQQ0_ECTSI) HSP 1 Score: 306 bits (785), Expect = 9.330e-87 Identity = 249/619 (40.23%), Postives = 292/619 (47.17%), Query Frame = 3
Query: 3 AAAQESIAGVGLSTEAAFGIARSLLPLPALWCLCASARG-------------FGNVERGKQRNSVDVTATTAAVSAVFDYYPFGFQFHGVMQAISLAATGAYWINDVAVEAREGAATAAAAVMRENARWSAYG-----------GGLAALPPLRLFLPRAVYFLCAVGFATALLLPVGRARARSKPQLWPRLRAQGRSEGGTGDYPPQRSLSVQRGPPGEAASNAPARASSDSRSENRGDGFEFFGNTCSALGRASCGDPSVRLSYHHAAARTSAALVSHLLPVVVLLLGPGSPAIVLLVAAACGFALRGVSIAAGA-----------GVMVPLGAVALAWSVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEFNFKIGGVMLFLNTFGTEILAALALPMLVAATVXXXXXXXXXXXXXXXXXXXXLQQTYQDPEEFSDKVADELRGKRRQRHXXXXXXXXXXXDAQRSFLEQPRKEVWLEASQSRRGKSGATARRGKSTPSSLGGRHPSDDGVWGAGVTTASGSRRWGDARETVPNPRSSASSAEEAFLSSMERISGLVLALSSARTLLSAANIAVQRGHLMLWAVFAPKFVFDATMQAVCGAAAVATWAVILVVHRGF 1754
AA Q+S A G+STEAAFG++RSLLPLPALW LC ARG G V+ R + + + V + HG +QA+SLAA GAYW+N+V A G L LPP RL LPRA Y LC G A ALL P GR R + + D PQ+ GE G TC+ G S SY + A T+A +VSHLLPVVVLLLGPGSPA+V V+AACG LR VS+ A G ++PLGAVA++WSVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEF+FK+GGV+LFLNTFGTEILAALALP+ AA P + V+ R RQ S P + R S G HP D G A T + LS+MER+SGL L LS+ RT LSAAN++VQRGHLMLWAVFAPKFVFDATMQAVCGAAAV WAV++V HR +
Sbjct: 816 AAVQDSAAEGGVSTEAAFGVSRSLLPLPALWYLCRLARGGXXXXXDGRMLWGSGAVDVANTRGAPAAVSLSGGVLGAASGWARRRCSHGAVQALSLAAIGAYWVNEVVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGSL--LPPARLLLPRATYLLCLAGLAVALLRPHGRRRRKQQ------------------DPVPQK---------GEE------------------------GRTCTPPGG---NGSSSSWSYAQSLAGTAATVVSHLLPVVVLLLGPGSPAVVAFVSAACGCVLRSVSVTAAGRTTXXXXXXRGGAVLPLGAVAVSWSVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEFDFKVGGVLLFLNTFGTEILAALALPLAAAAAAASGVSQDAA------------------PPVLPEAVSGSSRPNDRQ-----------------SLSSPP-------------------SPRPHSVAGRWDGNHPDDAGNDAAXXXXXXXXXXXXXXETT-------------SMLSAMERLSGLTLLLSAIRTFLSAANVSVQRGHLMLWAVFAPKFVFDATMQAVCGAAAVLAWAVVVVAHRAY 1311
BLAST of mRNA_H-elongata_contig52536.12558.1 vs. uniprot
Match: A0A4D9CYS9_9STRA (GPI ethanolamine phosphate transferase 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYS9_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 6.740e-14 Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 3
Query: 912 LAWSVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEFNFKIGGVMLFLNTFGTEILAALAL 1088
+A S +GRAFFF TGHH+QF+RLQYS+AFVGFDEF+F IGG +LFLNTFGTE+L L L
Sbjct: 1010 VAVSFLGRAFFFATGHHSQFNRLQYSSAFVGFDEFSFVIGGCLLFLNTFGTELLVLLLL 1068
BLAST of mRNA_H-elongata_contig52536.12558.1 vs. uniprot
Match: A0A250XB43_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XB43_9CHLO) HSP 1 Score: 66.6 bits (161), Expect = 1.310e-7 Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 3
Query: 918 WSVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEFNFKIGGVMLFLNTFGTEILAALALPMLV 1100
WS++G FF TGH +FS LQY++ F+GFDE + + G ML NTFG L ALALP+LV
Sbjct: 774 WSMLGLMLFFCTGHFCEFSGLQYTSPFIGFDEMEWYVSGAMLTSNTFGAMALTALALPLLV 834
BLAST of mRNA_H-elongata_contig52536.12558.1 vs. uniprot
Match: A0A2R5G5B3_9STRA (GPI ethanolamine phosphate transferase 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5B3_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 2.870e-5 Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 3
Query: 906 VALAWSVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEFNFKIGGVMLFLNTFG 1061
VAL WS+ ++FF TGH + F++L Y++ FVGFDE+ + GG+M+ NTFG
Sbjct: 202 VALLWSMASMSYFFATGHESFFNKLHYASPFVGFDEYEYFRGGLMMGSNTFG 253
BLAST of mRNA_H-elongata_contig52536.12558.1 vs. uniprot
Match: A0A2K3E1G7_CHLRE (GPI ethanolamine phosphate transferase 3 n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E1G7_CHLRE) HSP 1 Score: 58.2 bits (139), Expect = 5.860e-5 Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 3
Query: 780 VVVLLLGPGSPAIVLLVAAACGFALRGVSIAAGAG---------------------------VMVPLGAVALAWSVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEFNFKIGGVMLFLNTFGTEILAALALPMLVAATV 1112
V+ LLLGPG PA+VLL+A G +L + + A A V V AV S++G FFLTGH +FS LQY + FVGFD + ++ ++N+FG +L A+ALP++ AA V
Sbjct: 1031 VLTLLLGPGGPAVVLLLAVQ-GASLLALLLHAAANTRWLHRQPKSNPTAPAGAATAPLPPAAVAVVAAAVGCLLSLLGGQAFFLTGHFCEFSGLQYDSPFVGFDHMTWAATPLLFWINSFGGLMLPAVALPLVAAAAV 1167
BLAST of mRNA_H-elongata_contig52536.12558.1 vs. uniprot
Match: A0A061SPD4_9CHLO (Gpi ethanolamine phosphate transferase 3-like isoform x1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SPD4_9CHLO) HSP 1 Score: 57.4 bits (137), Expect = 7.580e-5 Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 3
Query: 921 SVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEFNFKIGGVMLFLNTFGTEILAALALP 1091
+++G+ F+ TGH +QF+ LQY+A FVGFD F + G +L NTFG +LAA +P
Sbjct: 445 TLLGQHLFYCTGHTSQFTGLQYTAGFVGFDSFQYTRAGFLLAANTFGPHVLAAFLVP 501
BLAST of mRNA_H-elongata_contig52536.12558.1 vs. uniprot
Match: A8I9K8_CHLRE (GPI ethanolamine phosphate transferase 3 n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8I9K8_CHLRE) HSP 1 Score: 57.4 bits (137), Expect = 9.130e-5 Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = 3
Query: 780 VVVLLLGPGSPAIVLLVAAACGFALRGVSIAAGAGVMVPLGAVALAWSVVGRAFFFLTGHHNQFSRLQYSAAFVGFDEFNFKIGGVMLFLNTFGTEILAALALPMLVAATV 1112
V+ LLLGPG PA+VLL+AA FFLTGH +FS LQY + FVGFD + ++ ++N+FG +L A+ALP++ AA V
Sbjct: 673 VLTLLLGPGGPAVVLLLAA-----------------------------------FFLTGHFCEFSGLQYDSPFVGFDHMTWAATPLLFWINSFGGLMLPAVALPLVAAAAV 748 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig52536.12558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig52536.12558.1 >prot_H-elongata_contig52536.12558.1 ID=prot_H-elongata_contig52536.12558.1|Name=mRNA_H-elongata_contig52536.12558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=530bp MQAISLAATGAYWINDVAVEAREGAATAAAAVMRENARWSAYGGGLAALPback to top mRNA from alignment at H-elongata_contig52536:296..2841- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig52536.12558.1 ID=mRNA_H-elongata_contig52536.12558.1|Name=mRNA_H-elongata_contig52536.12558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2546bp|location=Sequence derived from alignment at H-elongata_contig52536:296..2841- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig52536:296..2841- >mRNA_H-elongata_contig52536.12558.1 ID=mRNA_H-elongata_contig52536.12558.1|Name=mRNA_H-elongata_contig52536.12558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3180bp|location=Sequence derived from alignment at H-elongata_contig52536:296..2841- (Himanthalia elongata Himel1 dioecious)back to top |