mRNA_H-elongata_contig51602.12431.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51602.12431.1
Unique NamemRNA_H-elongata_contig51602.12431.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51602.12431.1 vs. uniprot
Match: D8LIR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR9_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 7.560e-40
Identity = 77/142 (54.23%), Postives = 98/142 (69.01%), Query Frame = 1 
Query:    1 VGLATDFPYHDPSEGPVMEARHQKNEAMQKAHWVHEDMAGCSPQKIDEEKARRERRKKETTEIAERTEGAWKPQRLAAGRSGQKGRGRGLLVPGGVAYPFLVTQEAADFLYSLDLDQEVEAKDEWGVWCRGKVVAVRGDGDW 426
            VGLA DFPYHDP++ PV+EA  ++  A Q      E+M G    +I++E+ARRE+   E T +AE     W+  RLA GR GQ GRGRG+ +PGGVA+PFL+ ++ ADFLYS+    EVE KDEW VWCR KVVAVRG+G W
Sbjct:  609 VGLADDFPYHDPTQLPVLEALRKQTVAYQHHQRNQEEMGGFGLAEIEQERARREKVANEATAVAEAKMKDWEHARLAVGRKGQTGRGRGIPIPGGVAHPFLLDKKTADFLYSVGTGDEVEVKDEWDVWCRAKVVAVRGEGGW 750
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BLAST of mRNA_H-elongata_contig51602.12431.1 vs. uniprot
Match: A0A6H5J8Y2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y2_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.760e-38
Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 1 
Query:    1 VGLATDFPYHDPSEGPVMEARHQKNEAMQKAHWVHEDMAGCSPQKIDEEKARRERRKKETTEIAE----RTEGAWKPQRLAAGRSGQKGRGRGLLVPGGVAYPFLVTQEAADFLYSLDLDQEVEAKDEWGVWCRGKVVAVRGDGDW 426
            VGLA DFPYHDP++ PV+EA  ++  A Q      E+M G    +I++E+ARRE+   E T +AE    +    W+  RLA GR GQ GRGRG+ +PGGVA+PFL+ ++ ADFLYS+    EVE KDEW VWCR KVVAVRG+G W
Sbjct:  634 VGLADDFPYHDPTQLPVLEALRKQTVAYQHHQRNQEEMGGFGLAEIEQERARREKAANEATAVAEAKMKQPTKDWEHARLAVGRKGQTGRGRGIPIPGGVAHPFLLDKKTADFLYSVGTGDEVEVKDEWDVWCRAKVVAVRGEGGW 779
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51602.12431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIR9_ECTSI7.560e-4054.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8Y2_9PHAE1.760e-3852.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51602contigH-elongata_contig51602:3539..3979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_001320.1
Exons1
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.3986464-CDS-H-elongata_contig51602:3538..39791622930844.3986464-CDS-H-elongata_contig51602:3538..3979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51602 3539..3979 +
1691679594.622586-CDS-H-elongata_contig51602:3538..39791691679594.622586-CDS-H-elongata_contig51602:3538..3979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51602 3539..3979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51602.12431.1prot_H-elongata_contig51602.12431.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51602 3539..3979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51602.12431.1

>prot_H-elongata_contig51602.12431.1 ID=prot_H-elongata_contig51602.12431.1|Name=mRNA_H-elongata_contig51602.12431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
VGLATDFPYHDPSEGPVMEARHQKNEAMQKAHWVHEDMAGCSPQKIDEEK
ARRERRKKETTEIAERTEGAWKPQRLAAGRSGQKGRGRGLLVPGGVAYPF
LVTQEAADFLYSLDLDQEVEAKDEWGVWCRGKVVAVRGDGDWVSLL*
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mRNA from alignment at H-elongata_contig51602:3539..3979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51602.12431.1 ID=mRNA_H-elongata_contig51602.12431.1|Name=mRNA_H-elongata_contig51602.12431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=441bp|location=Sequence derived from alignment at H-elongata_contig51602:3539..3979+ (Himanthalia elongata Himel1 dioecious)
GTGGGACTTGCCACCGACTTCCCGTATCACGACCCCTCCGAGGGTCCCGT
GATGGAAGCCCGGCATCAGAAGAACGAGGCAATGCAGAAAGCGCACTGGG
TACACGAAGACATGGCCGGGTGCTCGCCGCAGAAGATTGATGAAGAAAAG
GCCCGGCGGGAGAGGCGAAAAAAAGAAACCACGGAGATCGCGGAGAGAAC
GGAGGGGGCGTGGAAGCCGCAGAGGCTCGCCGCAGGGAGGTCGGGACAGA
AGGGGAGGGGCCGCGGTCTTCTAGTCCCCGGGGGGGTGGCGTACCCATTC
CTCGTGACACAAGAGGCGGCCGACTTTTTGTACTCGCTGGATTTAGATCA
AGAGGTAGAGGCGAAGGACGAGTGGGGGGTGTGGTGCCGTGGAAAGGTGG
TGGCTGTCCGCGGGGACGGGGACTGGGTGAGTTTATTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig51602:3539..3979+

>mRNA_H-elongata_contig51602.12431.1 ID=mRNA_H-elongata_contig51602.12431.1|Name=mRNA_H-elongata_contig51602.12431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=882bp|location=Sequence derived from alignment at H-elongata_contig51602:3539..3979+ (Himanthalia elongata Himel1 dioecious)
GTGGGACTTGCCACCGACTTCCCGTATCACGACCCCTCCGAGGGTCCCGT
GATGGAAGCCCGGCATCAGAAGAACGAGGCAATGCAGAAAGCGCACTGGG
TACACGAAGACATGGCCGGGTGCTCGCCGCAGAAGATTGATGAAGAAAAG
GCCCGGCGGGAGAGGCGAAAAAAAGAAACCACGGAGATCGCGGAGAGAAC
GGAGGGGGCGTGGAAGCCGCAGAGGCTCGCCGCAGGGAGGTCGGGACAGA
AGGGGAGGGGCCGCGGTCTTCTAGTCCCCGGGGGGGTGGCGTACCCATTC
CTCGTGACACAAGAGGCGGCCGACTTTTTGTACTCGCTGGATTTAGATCA
AGAGGTAGAGGCGAAGGACGAGTGGGGGGTGTGGTGCCGTGGAAAGGTGG
TGGCTGTCCGCGGGGACGGGGACTGGGTGAGTTTATTGTGAGTGGGACTT
GCCACCGACTTCCCGTATCACGACCCCTCCGAGGGTCCCGTGATGGAAGC
CCGGCATCAGAAGAACGAGGCAATGCAGAAAGCGCACTGGGTACACGAAG
ACATGGCCGGGTGCTCGCCGCAGAAGATTGATGAAGAAAAGGCCCGGCGG
GAGAGGCGAAAAAAAGAAACCACGGAGATCGCGGAGAGAACGGAGGGGGC
GTGGAAGCCGCAGAGGCTCGCCGCAGGGAGGTCGGGACAGAAGGGGAGGG
GCCGCGGTCTTCTAGTCCCCGGGGGGGTGGCGTACCCATTCCTCGTGACA
CAAGAGGCGGCCGACTTTTTGTACTCGCTGGATTTAGATCAAGAGGTAGA
GGCGAAGGACGAGTGGGGGGTGTGGTGCCGTGGAAAGGTGGTGGCTGTCC
GCGGGGACGGGGACTGGGTGAGTTTATTGTGA
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