mRNA_H-elongata_contig51600.12429.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A3E2H421_SCYLI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2H421_SCYLI) HSP 1 Score: 76.6 bits (187), Expect = 1.980e-12 Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 3
Query: 414 RFDQALRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSR-LYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
R Q L+NP P H K V ++ Y T+D GIT+GG G+ L ++DSD+G CL TRRS G + L G ISW T+EAEY A
Sbjct: 1250 RLSQFLQNPSPQHLKLVKQVFQYLQGTQDVGITFGGDGNENLDFYGFSDSDYGGCLETRRSTIGYLFFLGGGPISWRCQRLPCVTLSTTEAEYCA 1344
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: UPI001E1BC44C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC44C) HSP 1 Score: 73.2 bits (178), Expect = 5.760e-12 Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 3
Query: 435 NPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
+PG H +AV + + Y T D+G+ YGG + YTDS+F AC +TRRS G + M G I+W S +Q+ A T EAEY A
Sbjct: 48 DPGKPHWEAVKRSLSYLAGTMDYGLCYGGDQLTNTLVTYTDSNFAACPDTRRSTSGTLFMFNGGPIAWNSHLQKSVAQSTCEAEYYA 134
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: Q153Y7_CYNCS (Polyprotein (Fragment) n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=Q153Y7_CYNCS) HSP 1 Score: 72.4 bits (176), Expect = 3.040e-11 Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 1
Query: 40 VDDILAHAKDKATMDRFVAELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVKMFDVKKGSKIPAT--SGVLKLSKADEPRNPEERKKTRKLSYREAVGVLMWTATMTRPHIASGVGALTRLCETLGR 447
VDD+L +K+K + +L F++KD+ AR G I+R+ KAR LT+ Q VE ++K F++ G+K T + KLS P + EE++ ++ Y AVG LM+ TRP +A V ++R GR
Sbjct: 87 VDDMLIASKNKEDIQLVKDQLNTEFEMKDLGKARKIFGIEISRDRKARTLTLSQRSYVEKVLKRFNMY-GAKTVNTPIAAHFKLSACQCPDSNEEKEYMSRVPYSSAVGSLMYAMICTRPDLAYAVSMVSRYMANPGR 223
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A803PVN1_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PVN1_CANSA) HSP 1 Score: 70.5 bits (171), Expect = 2.240e-10 Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 3
Query: 414 RFDQALRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSR-LYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
+ Q L+ P H A +++ Y T G+ + S L ++A+TD+DFGACLNTRRS+ G + L K ISW S Q+ + ++EAEY A
Sbjct: 577 KLSQYLQAPRQPHMTAATRVLQYIKGTPGQGLYFHASSSNPLTLQAFTDADFGACLNTRRSITGYCIFLGKSLISWKSKKQQTVSRSSAEAEYRA 671
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A5N6NKC8_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NKC8_9ASTR) HSP 1 Score: 69.7 bits (169), Expect = 4.180e-10 Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 3
Query: 429 LRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
+ NP VH+ AV +I+ Y T G+ YG + L + YTDSD+G C++ R+SV + M+ A+SW S Q A +SEAEY++
Sbjct: 654 MHNPSKVHQGAVRRILRYVAGTYKMGLWYG-KDKELRLLGYTDSDWGGCIDDRKSVSANIFMMGDSAVSWSSRKQSSVALSSSEAEYIS 741
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A803MLB8_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MLB8_CHEQI) HSP 1 Score: 67.0 bits (162), Expect = 4.370e-10 Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 3
Query: 429 LRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
+ PG H + V +I Y T D G+ YG G V Y+DSD+ A ++TRRSV G V L +SW S +Q T+EAEY+A
Sbjct: 1 MARPGREHWQGVKRIFRYLRGTADIGLVYGN-GKECLVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMA 88
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A5D6XLK3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLK3_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 6.950e-10 Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query: 429 LRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
+ NPG H KA + ++ Y HT+D + + GQG ++ + AY DSD+ A + RRSV GVV A I + S Q A TSEAE VA
Sbjct: 454 VENPGRAHWKAAIHVLRYLYHTRDLALRFKGQGDKIKLRAYCDSDWAANRDDRRSVSGVVGFAAGDPIIFKSRTQSTVALSTSEAEMVA 542
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: UPI000B8AA466 (uncharacterized protein LOC110792187 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AA466) HSP 1 Score: 67.8 bits (164), Expect = 8.770e-10 Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 3
Query: 417 FDQALRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
Q++++P H+KA+ ++ Y HT GI+ S L ++AY DSD+ AC +TRRSV G V++L ISW S Q + +SEAEY A
Sbjct: 198 LSQSMQSPKLSHQKALHHLLRYVAHTAGQGISIQPSSS-LTLQAYCDSDWAACPDTRRSVTGYVMLLGNSPISWKSKKQTTISRSSSEAEYRA 289
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A8H5HKT9_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HKT9_9AGAR) HSP 1 Score: 68.6 bits (166), Expect = 9.280e-10 Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3
Query: 435 NPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRL-----YVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
NPGP H KAV ++ Y T D+ I Y + L +A++D+D G ++ RS G +L++A GA+SW+S +Q A T+EAE+VA
Sbjct: 378 NPGPAHWKAVKHLLRYIRGTLDYRIEYSATAAALAPTGSLFQAFSDADHGGNIDNGRSTTGTLLLVAGGAVSWFSRLQSVVALSTTEAEFVA 469
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A225VGP7_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGP7_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 9.760e-10 Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 3
Query: 429 LRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
+ N G H +AV + + Y T+D+G+ + G + ++A+TDSD+ AC + RRSV G V M+ + I+W S Q A T+EAEYVA
Sbjct: 487 MANYGEAHWEAVKRCLRYLKATRDYGLEFSGDA--VVLKAFTDSDYAACEDDRRSVSGYVTMIGQCTITWSSRRQRIVAQSTAEAEYVA 573 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51600.12429.1 >prot_H-elongata_contig51600.12429.1 ID=prot_H-elongata_contig51600.12429.1|Name=mRNA_H-elongata_contig51600.12429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp MDRFVAELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVKback to top mRNA from alignment at H-elongata_contig51600:266..960- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51600.12429.1 ID=mRNA_H-elongata_contig51600.12429.1|Name=mRNA_H-elongata_contig51600.12429.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=695bp|location=Sequence derived from alignment at H-elongata_contig51600:266..960- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51600:266..960- >mRNA_H-elongata_contig51600.12429.1 ID=mRNA_H-elongata_contig51600.12429.1|Name=mRNA_H-elongata_contig51600.12429.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig51600:266..960- (Himanthalia elongata Himel1 dioecious)back to top |