mRNA_H-elongata_contig51600.12429.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51600.12429.1
Unique NamemRNA_H-elongata_contig51600.12429.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A3E2H421_SCYLI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2H421_SCYLI)

HSP 1 Score: 76.6 bits (187), Expect = 1.980e-12
Identity = 41/95 (43.16%), Postives = 52/95 (54.74%), Query Frame = 3
Query:  414 RFDQALRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSR-LYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
            R  Q L+NP P H K V ++  Y   T+D GIT+GG G+  L    ++DSD+G CL TRRS  G +  L  G ISW           T+EAEY A
Sbjct: 1250 RLSQFLQNPSPQHLKLVKQVFQYLQGTQDVGITFGGDGNENLDFYGFSDSDYGGCLETRRSTIGYLFFLGGGPISWRCQRLPCVTLSTTEAEYCA 1344          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: UPI001E1BC44C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC44C)

HSP 1 Score: 73.2 bits (178), Expect = 5.760e-12
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  435 NPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
            +PG  H +AV + + Y   T D+G+ YGG      +  YTDS+F AC +TRRS  G + M   G I+W S +Q+  A  T EAEY A
Sbjct:   48 DPGKPHWEAVKRSLSYLAGTMDYGLCYGGDQLTNTLVTYTDSNFAACPDTRRSTSGTLFMFNGGPIAWNSHLQKSVAQSTCEAEYYA 134          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: Q153Y7_CYNCS (Polyprotein (Fragment) n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=Q153Y7_CYNCS)

HSP 1 Score: 72.4 bits (176), Expect = 3.040e-11
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   40 VDDILAHAKDKATMDRFVAELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVKMFDVKKGSKIPAT--SGVLKLSKADEPRNPEERKKTRKLSYREAVGVLMWTATMTRPHIASGVGALTRLCETLGR 447
            VDD+L  +K+K  +     +L   F++KD+  AR   G  I+R+ KAR LT+ Q   VE ++K F++  G+K   T  +   KLS    P + EE++   ++ Y  AVG LM+    TRP +A  V  ++R     GR
Sbjct:   87 VDDMLIASKNKEDIQLVKDQLNTEFEMKDLGKARKIFGIEISRDRKARTLTLSQRSYVEKVLKRFNMY-GAKTVNTPIAAHFKLSACQCPDSNEEKEYMSRVPYSSAVGSLMYAMICTRPDLAYAVSMVSRYMANPGR 223          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A803PVN1_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PVN1_CANSA)

HSP 1 Score: 70.5 bits (171), Expect = 2.240e-10
Identity = 37/95 (38.95%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  414 RFDQALRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSR-LYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
            +  Q L+ P   H  A  +++ Y   T   G+ +    S  L ++A+TD+DFGACLNTRRS+ G  + L K  ISW S  Q+  +  ++EAEY A
Sbjct:  577 KLSQYLQAPRQPHMTAATRVLQYIKGTPGQGLYFHASSSNPLTLQAFTDADFGACLNTRRSITGYCIFLGKSLISWKSKKQQTVSRSSAEAEYRA 671          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A5N6NKC8_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NKC8_9ASTR)

HSP 1 Score: 69.7 bits (169), Expect = 4.180e-10
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  429 LRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
            + NP  VH+ AV +I+ Y   T   G+ YG +   L +  YTDSD+G C++ R+SV   + M+   A+SW S  Q   A  +SEAEY++
Sbjct:  654 MHNPSKVHQGAVRRILRYVAGTYKMGLWYG-KDKELRLLGYTDSDWGGCIDDRKSVSANIFMMGDSAVSWSSRKQSSVALSSSEAEYIS 741          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A803MLB8_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MLB8_CHEQI)

HSP 1 Score: 67.0 bits (162), Expect = 4.370e-10
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 3
Query:  429 LRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
            +  PG  H + V +I  Y   T D G+ YG  G    V  Y+DSD+ A ++TRRSV G V  L    +SW S +Q      T+EAEY+A
Sbjct:    1 MARPGREHWQGVKRIFRYLRGTADIGLVYGN-GKECLVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMA 88          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A5D6XLK3_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLK3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.950e-10
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  429 LRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
            + NPG  H KA + ++ Y  HT+D  + + GQG ++ + AY DSD+ A  + RRSV GVV   A   I + S  Q   A  TSEAE VA
Sbjct:  454 VENPGRAHWKAAIHVLRYLYHTRDLALRFKGQGDKIKLRAYCDSDWAANRDDRRSVSGVVGFAAGDPIIFKSRTQSTVALSTSEAEMVA 542          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: UPI000B8AA466 (uncharacterized protein LOC110792187 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AA466)

HSP 1 Score: 67.8 bits (164), Expect = 8.770e-10
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  417 FDQALRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
              Q++++P   H+KA+  ++ Y  HT   GI+     S L ++AY DSD+ AC +TRRSV G V++L    ISW S  Q   +  +SEAEY A
Sbjct:  198 LSQSMQSPKLSHQKALHHLLRYVAHTAGQGISIQPSSS-LTLQAYCDSDWAACPDTRRSVTGYVMLLGNSPISWKSKKQTTISRSSSEAEYRA 289          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A8H5HKT9_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HKT9_9AGAR)

HSP 1 Score: 68.6 bits (166), Expect = 9.280e-10
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  435 NPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRL-----YVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
            NPGP H KAV  ++ Y   T D+ I Y    + L       +A++D+D G  ++  RS  G +L++A GA+SW+S +Q   A  T+EAE+VA
Sbjct:  378 NPGPAHWKAVKHLLRYIRGTLDYRIEYSATAAALAPTGSLFQAFSDADHGGNIDNGRSTTGTLLLVAGGAVSWFSRLQSVVALSTTEAEFVA 469          
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Match: A0A225VGP7_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGP7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.760e-10
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 3
Query:  429 LRNPGPVHKKAVMKIIDYPLHTKDWGITYGGQGSRLYVEAYTDSDFGACLNTRRSV*GVVLMLAKGAISWYSMIQEGKASGTSEAEYVA 695
            + N G  H +AV + + Y   T+D+G+ + G    + ++A+TDSD+ AC + RRSV G V M+ +  I+W S  Q   A  T+EAEYVA
Sbjct:  487 MANYGEAHWEAVKRCLRYLKATRDYGLEFSGDA--VVLKAFTDSDYAACEDDRRSVSGYVTMIGQCTITWSSRRQRIVAQSTAEAEYVA 573          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51600.12429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3E2H421_SCYLI1.980e-1243.16Integrase catalytic domain-containing protein (Fra... [more]
UPI001E1BC44C5.760e-1242.53secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
Q153Y7_CYNCS3.040e-1134.78Polyprotein (Fragment) n=1 Tax=Cynara cardunculus ... [more]
A0A803PVN1_CANSA2.240e-1038.95Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]
A0A5N6NKC8_9ASTR4.180e-1039.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A803MLB8_CHEQI4.370e-1040.45Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A5D6XLK3_9STRA6.950e-1042.70Integrase catalytic domain-containing protein n=1 ... [more]
UPI000B8AA4668.770e-1040.86uncharacterized protein LOC110792187 n=1 Tax=Spina... [more]
A0A8H5HKT9_9AGAR9.280e-1039.13Uncharacterized protein n=1 Tax=Tricholomella cons... [more]
A0A225VGP7_9STRA9.760e-1040.45Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51600contigH-elongata_contig51600:266..960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.6
Seed ortholog evalue3e-10
Seed eggNOG ortholog4081.Solyc11g051150.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size695
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51600.12429.1prot_H-elongata_contig51600.12429.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51600 496..882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.2561333-UTR-H-elongata_contig51600:265..4951622930844.2561333-UTR-H-elongata_contig51600:265..495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51600 266..495 -
1691679594.5588708-UTR-H-elongata_contig51600:265..4951691679594.5588708-UTR-H-elongata_contig51600:265..495Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51600 266..495 -
1622930844.2842402-UTR-H-elongata_contig51600:882..9601622930844.2842402-UTR-H-elongata_contig51600:882..960Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51600 883..960 -
1691679594.59059-UTR-H-elongata_contig51600:882..9601691679594.59059-UTR-H-elongata_contig51600:882..960Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51600 883..960 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.268936-CDS-H-elongata_contig51600:495..8821622930844.268936-CDS-H-elongata_contig51600:495..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51600 496..882 -
1691679594.571146-CDS-H-elongata_contig51600:495..8821691679594.571146-CDS-H-elongata_contig51600:495..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51600 496..882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51600.12429.1

>prot_H-elongata_contig51600.12429.1 ID=prot_H-elongata_contig51600.12429.1|Name=mRNA_H-elongata_contig51600.12429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MDRFVAELGQRFKLKDMSGARSYMGFHITRNHKARKLTIDQYLCVESIVK
MFDVKKGSKIPATSGVLKLSKADEPRNPEERKKTRKLSYREAVGVLMWTA
TMTRPHIASGVGALTRLCETLGRCIKKQ*
back to top

mRNA from alignment at H-elongata_contig51600:266..960-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51600.12429.1 ID=mRNA_H-elongata_contig51600.12429.1|Name=mRNA_H-elongata_contig51600.12429.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=695bp|location=Sequence derived from alignment at H-elongata_contig51600:266..960- (Himanthalia elongata Himel1 dioecious)
GCCGTTAACGTCGCGGCGGAAGTGGTGGTGGTCGTAGATGTGGACGATAT TCTTGCTCACGCCAAAGACAAAGCGACTATGGACAGATTTGTGGCTGAGC TTGGACAGAGGTTCAAATTGAAGGACATGAGTGGCGCCAGGTCCTACATG GGCTTTCATATTACTAGGAACCACAAGGCGCGCAAGCTGACGATCGACCA ATACTTGTGCGTGGAGTCGATAGTGAAAATGTTCGACGTCAAGAAGGGAA GCAAGATACCTGCTACGTCGGGGGTGCTAAAACTGTCAAAGGCGGACGAG CCGCGGAACCCGGAGGAGAGGAAGAAAACGAGGAAATTATCATATCGGGA AGCAGTGGGGGTGCTTATGTGGACAGCGACCATGACACGGCCGCACATTG CGAGTGGAGTAGGCGCTTTGACCAGGCTCTGCGAAACCCTGGGCCGGTGC ATAAAAAAGCAGTGATGAAGATTATCGACTATCCCCTTCACACAAAGGAT TGGGGGATTACATACGGTGGACAAGGCTCTAGACTCTACGTGGAGGCATA CACGGACTCGGATTTCGGAGCCTGCTTGAATACGAGACGATCGGTGTAAG GTGTGGTGTTGATGCTGGCGAAGGGGGCGATCAGCTGGTACTCAATGATC CAAGAAGGGAAAGCATCGGGCACATCGGAGGCAGAGTACGTTGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig51600:266..960-

>mRNA_H-elongata_contig51600.12429.1 ID=mRNA_H-elongata_contig51600.12429.1|Name=mRNA_H-elongata_contig51600.12429.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig51600:266..960- (Himanthalia elongata Himel1 dioecious)
ATGGACAGATTTGTGGCTGAGCTTGGACAGAGGTTCAAATTGAAGGACAT
GAGTGGCGCCAGGTCCTACATGGGCTTTCATATTACTAGGAACCACAAGG
CGCGCAAGCTGACGATCGACCAATACTTGTGCGTGGAGTCGATAGTGAAA
ATGTTCGACGTCAAGAAGGGAAGCAAGATACCTGCTACGTCGGGGGTGCT
AAAACTGTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAGGAAGAAAA
CGAGGAAATTATCATATCGGGAAGCAGTGGGGGTGCTTATGTGGACAGCG
ACCATGACACGGCCGCACATTGCGAGTGGAGTAGGCGCTTTGACCAGGCT
CTGCGAAACCCTGGGCCGGTGCATAAAAAAGCAGTGAATGGACAGATTTG
TGGCTGAGCTTGGACAGAGGTTCAAATTGAAGGACATGAGTGGCGCCAGG
TCCTACATGGGCTTTCATATTACTAGGAACCACAAGGCGCGCAAGCTGAC
GATCGACCAATACTTGTGCGTGGAGTCGATAGTGAAAATGTTCGACGTCA
AGAAGGGAAGCAAGATACCTGCTACGTCGGGGGTGCTAAAACTGTCAAAG
GCGGACGAGCCGCGGAACCCGGAGGAGAGGAAGAAAACGAGGAAATTATC
ATATCGGGAAGCAGTGGGGGTGCTTATGTGGACAGCGACCATGACACGGC
CGCACATTGCGAGTGGAGTAGGCGCTTTGACCAGGCTCTGCGAAACCCTG
GGCCGGTGCATAAAAAAGCAGTGA
back to top