mRNA_H-elongata_contig51548.12421.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51548.12421.1
Unique NamemRNA_H-elongata_contig51548.12421.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: D7G9I1_ECTSI (Cyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I1_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.510e-43
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH+YLG FFASTDALLAPGG+MVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALL AMA  SS SLE LDNMCVH
Sbjct:  911 IEAVGHNYLGTFFASTDALLAPGGVMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLSAMASSSSFSLEGLDNMCVH 995          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A6H5K6Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Z7_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.180e-43
Identity = 76/85 (89.41%), Postives = 78/85 (91.76%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH+YLG FFAS DALLAPGG+MVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALL AMA  SS SLE LDNMCVH
Sbjct:  496 IEAVGHNYLGTFFASADALLAPGGVMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLSAMASSSSFSLEGLDNMCVH 580          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A835ZDJ8_9STRA (Mycolic acid cyclopropane synthetase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 7.210e-35
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH+YL  +FA+ +ALLAPGG+ VM+AITTPE+RY+EY+RSTDFINTIIFPGSCCPSLTAL+ AMA HS LSLE  +N+ VH
Sbjct:  567 IEAVGHNYLPSYFAAVEALLAPGGVFVMEAITTPESRYKEYLRSTDFINTIIFPGSCCPSLTALMDAMASHSRLSLEGYENIGVH 651          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A7S2XUH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUH5_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.840e-34
Identity = 61/85 (71.76%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH+YLG+F+ + ++LL P GI+VM+AITTPE+RY EY+RSTDFINTIIFPGSCCPSLTALL A +K+SSL+LE +DN+C+H
Sbjct:  582 IEAVGHNYLGQFYRAMESLLKPDGILVMEAITTPESRYVEYLRSTDFINTIIFPGSCCPSLTALLDAASKNSSLTLEGVDNICLH 666          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A7S4DDE0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDE0_HETAK)

HSP 1 Score: 129 bits (324), Expect = 1.070e-33
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH+YLG FFA+ + LL P G+ VM+AITTPE+RY+EY+RSTDFINTI FPGSCCPSLTALL AMA++S +SLE  DN+ +H
Sbjct:  281 IEAVGHNYLGSFFAAVERLLKPDGVFVMEAITTPESRYQEYLRSTDFINTIAFPGSCCPSLTALLEAMARNSEMSLEGYDNIGLH 365          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A4D9CY91_9STRA (Amino_oxidase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY91_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.380e-31
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGHS+LG +F +  +LL P G+ VM+AITTPE+RY +Y++STDFINTI+FPGSCCPSLT+LL AMA+HS+LSLE L N+ VH
Sbjct:  819 IEAVGHSHLGEYFHAVGSLLKPSGVFVMEAITTPESRYVDYLKSTDFINTIVFPGSCCPSLTSLLEAMARHSALSLEGLINIDVH 903          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A7S2REM9_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REM9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 7.810e-30
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH+YLG FF++ D LL PGGI VM+AITTPE RY+E   + DFINT+IFPGSCCPSL ALL AMA  S+ SLE LDN+ +H
Sbjct:  801 IEAVGHNYLGAFFSAVDRLLKPGGIFVMEAITTPECRYDEVRTAADFINTVIFPGSCCPSLQALLTAMAAKSNFSLERLDNINLH 885          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A7S4SWZ7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SWZ7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.100e-29
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH +LG FF + + +LAP GI+VM+AITTPE RYE Y+RSTDFINTIIFPG CCPSL AL+ A  K S+L+LE +DN+ +H
Sbjct:  283 IEAVGHEHLGEFFWAVEQVLAPDGILVMEAITTPEARYETYLRSTDFINTIIFPGGCCPSLHALIDASYKQSTLTLEHIDNIGLH 367          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A7S2PQB7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQB7_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.020e-29
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH +LG FF + + +LA  GI+VM+AITTPE RYE Y RSTDFINTIIFPGSCCPSL AL+ A  K SSL+LE +DN+ +H
Sbjct:  158 IEAVGHEHLGEFFWAVEQVLAYDGILVMEAITTPETRYETYRRSTDFINTIIFPGSCCPSLHALVDASYKQSSLTLEHIDNIGLH 242          
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Match: A0A1Z5K125_FISSO (Cyclopropane-fatty-acyl-phospholipid synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K125_FISSO)

HSP 1 Score: 115 bits (288), Expect = 4.450e-28
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    4 IEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFINTIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH 258
            IEAVGH +LG FF + + +LA  GI+VM+AITTPE RYE Y+RSTDFINTIIFPGSCCPSL AL+ A  + S L+LE +DN+ +H
Sbjct:  826 IEAVGHEHLGEFFWAVEQVLAKDGILVMEAITTPEQRYETYLRSTDFINTIIFPGSCCPSLHALVDAAYRQSCLTLEHIDNIGLH 910          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51548.12421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9I1_ECTSI2.510e-4390.59Cyclopropane-fatty-acyl-phospholipid synthase/ oxi... [more]
A0A6H5K6Z7_9PHAE4.180e-4389.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDJ8_9STRA7.210e-3574.12Mycolic acid cyclopropane synthetase-domain-contai... [more]
A0A7S2XUH5_9STRA1.840e-3471.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DDE0_HETAK1.070e-3370.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CY91_9STRA1.380e-3168.24Amino_oxidase domain-containing protein n=1 Tax=Na... [more]
A0A7S2REM9_9STRA7.810e-3068.24Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S4SWZ7_9STRA1.100e-2965.88Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2PQB7_9STRA2.020e-2967.06Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5K125_FISSO4.450e-2864.71Cyclopropane-fatty-acyl-phospholipid synthase n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51548contigH-elongata_contig51548:444..1611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.5e-37
Seed eggNOG ortholog2880.D7G9I1
EggNOG free text desc.lipid biosynthetic process
EggNOG OGs2QSMW@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncyclopropane-fatty-acyl-phospholipid synthase/ oxidoreductase
Ec32 orthologEc-28_001010.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930843.2150953-CDS-H-elongata_contig51548:443..5351622930843.2150953-CDS-H-elongata_contig51548:443..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51548 444..535 -
1691679594.0267646-CDS-H-elongata_contig51548:443..5351691679594.0267646-CDS-H-elongata_contig51548:443..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51548 444..535 -
1622930843.233144-CDS-H-elongata_contig51548:1445..16111622930843.233144-CDS-H-elongata_contig51548:1445..1611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51548 1446..1611 -
1691679594.0357056-CDS-H-elongata_contig51548:1445..16111691679594.0357056-CDS-H-elongata_contig51548:1445..1611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51548 1446..1611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51548.12421.1prot_H-elongata_contig51548.12421.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51548 444..1611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51548.12421.1

>prot_H-elongata_contig51548.12421.1 ID=prot_H-elongata_contig51548.12421.1|Name=mRNA_H-elongata_contig51548.12421.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
QIEAVGHSYLGRFFASTDALLAPGGIMVMQAITTPENRYEEYIRSTDFIN
TIIFPGSCCPSLTALLCAMAKHSSLSLESLDNMCVH
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mRNA from alignment at H-elongata_contig51548:444..1611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51548.12421.1 ID=mRNA_H-elongata_contig51548.12421.1|Name=mRNA_H-elongata_contig51548.12421.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-elongata_contig51548:444..1611- (Himanthalia elongata Himel1 dioecious)
CAGATCGAGGCGGTGGGCCACAGCTATCTGGGTCGCTTCTTCGCCTCCAC GGATGCCCTGCTGGCCCCCGGTGGGATCATGGTCATGCAGGCCATCACCA CTCCAGAGAACCGCTACGAGGAATATATTCGCTCCACGGACTTTATCAAC ACCATAATCTTTCCGGGTGAGCACTTCGATATCCCCTTTCCCCCCCTCTC CCACCGCCTCCTTCCTTTCCCTTTCTTTAGTAGGAATTACTCTATATTAT TGTACGACGCAGGTACTGCGTACTGATACCCTTTTGAATGCTGACTGTTG TTCCTATTGAGGGTACCCGTTACGTGGGGGACGGACGATGTATCTTGTAT TTATAGCGTAACACGCTCCGGGAGTGTTAACCTCCTTGTCCCCTTACCCC TCCCCTCCACCGCCTATTTTCTCGGTAGCAGCTTTAGAAAAGTACCGGCC GGTGTAGTATATAGTAACGCGAAACGCGTGAACAGTTTGGAAATATCTCG CCGAGATCCTTTTGATATATAGGCTGCCCTGATGAGTCTGTGTGCTGTAT TGCTTGCAACCCCATTGCTTTGACTGCTTCAGGAAAAGTCGATCGTAGAC ACTGGGTCTCCTTGAATAGAAGGCATGTTGTATCCTCTCAGTCCTGTCAG CAATGGGGCACGTGTTTTGTTAACCATAAGCAGCAGTAATAACCACACAG CCAAAACAGAGTAGATAACGCGTACGCGGGATGGATTTCGTACAGATTCA GAGGCGTGTTACCCCGGGAACAGGGGGGGGTTACGTTGCGCCGCGATGGC CACGGTAAACATCGATAGGTGCACAGTATTGAGCTGTACCTTAAGGGTTT AGGGTTGTTCATCAGCTCCGAGGCAAAGCAGGTCGATGCGCAAGCCACGT TGCGTGTGGCGAAGGTTTTCTTCGCAGACGAGTGGCGTTTTTCATCTTGT CTCGTTTCGTTGCGGTTCGTTTCACATCCCGTTTCGGTTCAAGCTTCTTT CTGCTTTATTTTGTTTCGTTTCGTTTTGATATATATATATATATGTCGTT GCGTTTCACCTGTGTCGTGGCCGCAGGATCGTGCTGTCCGTCGCTTACCG CTCTGCTTTGCGCCATGGCCAAGCACAGCTCCCTATCGCTAGAAAGCCTG GACAACATGTGCGTGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig51548:444..1611-

>mRNA_H-elongata_contig51548.12421.1 ID=mRNA_H-elongata_contig51548.12421.1|Name=mRNA_H-elongata_contig51548.12421.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig51548:444..1611- (Himanthalia elongata Himel1 dioecious)
CAGATCGAGGCGGTGGGCCACAGCTATCTGGGTCGCTTCTTCGCCTCCAC
GGATGCCCTGCTGGCCCCCGGTGGGATCATGGTCATGCAGGCCATCACCA
CTCCAGAGAACCGCTACGAGGAATATATTCGCTCCACGGACTTTATCAAC
ACCATAATCTTTCCGGCAGATCGAGGCGGTGGGCCACAGCTATCTGGGTC
GCTTCTTCGCCTCCACGGATGCCCTGCTGGCCCCCGGTGGGATCATGGTC
ATGCAGGCCATCACCACTCCAGAGAACCGCTACGAGGAATATATTCGCTC
CACGGACTTTATCAACACCATAATCTTTCCGGGATCGTGCTGTCCGTCGC
TTACCGCTCTGCTTTGCGCCATGGCCAAGCACAGCTCCCTATCGCTAGAA
AGCCTGGACAACATGTGCGTGCACGATCGTGCTGTCCGTCGCTTACCGCT
CTGCTTTGCGCCATGGCCAAGCACAGCTCCCTATCGCTAGAAAGCCTGGA
CAACATGTGCGTGCAC
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