mRNA_H-elongata_contig51451.12408.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51451.12408.1
Unique NamemRNA_H-elongata_contig51451.12408.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig51451.12408.1 vs. uniprot
Match: A0A6H5KTE5_9PHAE (G-patch domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTE5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.630e-24
Identity = 63/89 (70.79%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 MASRFKRQRAKASKPKP------STPTFDDEDDYLSAAFVVDKPNPPRGKRAREE-DPERGR---VLSKKAIAQKMEERREEGLQQKIG 237
            MASRFKRQRAKA  P        STP F DEDDYLSA+FVV++PN PRGKRA++E DPERGR   V+SKK IA+KME+RREEGLQQKIG
Sbjct:    1 MASRFKRQRAKALNPASAIGAATSTPAFGDEDDYLSASFVVEEPNKPRGKRAQQEADPERGRGESVMSKKDIAKKMEDRREEGLQQKIG 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51451.12408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTE5_9PHAE4.630e-2470.79G-patch domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51451contigH-elongata_contig51451:263..1779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.2e-22
Seed eggNOG ortholog2880.D8LM27
GOsGO:0000775,GO:0000776,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0098687
EggNOG free text desc.DUF4187
EggNOG OGsKOG1994@1,KOG1994@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size240
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51451.12408.1prot_H-elongata_contig51451.12408.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51451 263..1779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930841.9836755-CDS-H-elongata_contig51451:262..3361622930841.9836755-CDS-H-elongata_contig51451:262..336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51451 263..336 -
1691679593.553125-CDS-H-elongata_contig51451:262..3361691679593.553125-CDS-H-elongata_contig51451:262..336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51451 263..336 -
1622930841.9993472-CDS-H-elongata_contig51451:681..8191622930841.9993472-CDS-H-elongata_contig51451:681..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51451 682..819 -
1691679593.5637991-CDS-H-elongata_contig51451:681..8191691679593.5637991-CDS-H-elongata_contig51451:681..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51451 682..819 -
1622930842.0169513-CDS-H-elongata_contig51451:1751..17791622930842.0169513-CDS-H-elongata_contig51451:1751..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51451 1752..1779 -
1691679593.5718906-CDS-H-elongata_contig51451:1751..17791691679593.5718906-CDS-H-elongata_contig51451:1751..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51451 1752..1779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51451.12408.1

>prot_H-elongata_contig51451.12408.1 ID=prot_H-elongata_contig51451.12408.1|Name=mRNA_H-elongata_contig51451.12408.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MASRFKRQRAKASKPKPSTPTFDDEDDYLSAAFVVDKPNPPRGKRAREED
PERGRVLSKKAIAQKMEERREEGLQQKIGK
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mRNA from alignment at H-elongata_contig51451:263..1779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51451.12408.1 ID=mRNA_H-elongata_contig51451.12408.1|Name=mRNA_H-elongata_contig51451.12408.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1517bp|location=Sequence derived from alignment at H-elongata_contig51451:263..1779- (Himanthalia elongata Himel1 dioecious)
ATGGCTTCGAGATTCAAACGACAACGAGGTAAGTAGGAGAGTTGGATTCT
GATCCGAGCCCTTTTTTATTAAAAACCCCTTGAACTCATTCCAACTCTCC
GAACATCCAAACCTTCTTAGCGCCGTGAGAGGTGCAGTCAAGGGGACCAA
CCATCGTCATGTTCGAATGTGTACATTACTACCTTTGAGCACAAAATCGT
TACACATGCGCAGCATTTGGTACTCGAGGGTTTTCAAGTCTCATCACCGG
GTAAATTTACAATTTACCAGTTGTGACTCTATACTGTATTTCCATATAAA
TTATACATTATACAAATCATCGGGACTCTTCGTAAAGCATTCGGTACAGT
ATTGTATACGCCTCCGATGATGTCTGTGACCGTATCGCAAATGTCCATTT
TACCATTAGTGCACTATAATTTGTCCATGGAGTCACCGGAAAAGGCTGCA
CCCGTTACTCACGATACCTCAGCACCGGTGGGCTCTCGGTGGTGAACGCC
ATCGGTACGCCATTACGTGACCTGATGAAATCGGGACTGGCCCGATGGCG
GTTGACGGTAGATATGGAGGCCGTCGCGAAAAACAAGAGGATCGAGAGGA
TCCCGGGGGTACGCACCAGATTCAGTCTGGGTTGAGAGAATGAGTAGGTT
GACGCGGGACGGGACTGCCGAACCCGTCTCACGAGACAAAATTACCAGAC
ACGAACGGGGACAGGGAAAATTCACCTTATATTTTTATCAAATTGCATTA
GACCGCGAAAACCGGCATGACACGTAAGGGGGCGCCAAGCCGGTTTGCAA
ATGCCCCCCCCTTATTTAGAGCTATCCCTGAAGACGTTGGACTGGCCTAT
CCTACTCGCGTTGCTTATCCCTGTTTAGCTCACCACAAGCAGGAGGCAGC
CAAATCCGGTTGATTTGCTATATATTATGACCACACGATAATTTCTTTGC
CGTTCAGCAGCGAAGGCCTCGAAGCCCAAACCTTCAACCCCGACGTTCGA
CGACGAAGACGACTATCTTTCGGCGGCGTTCGTTGTAGATAAGCCGAACC
CTCCGCGGGGCAAACGCGCAAGAGAAGAGGATCCCGAGCGTGGCAGAGGT
GAGTGACGGTGTGGTCCCGACGTCGGAAGCGTGGGAGTCGTGGTGTGGAG
CCAAGTTCCTACTTGTAGTGCGGTTACGGCGCATTGCGACTGACTGCTCC
GCGCGTGTCGCTTGCAAGAGACGCGGTGGGGGGGGGGGGGGGGGGCACGT
AGCAAGGTGACCTGCTGCAGTCTTCCTCGACTCGAAAAAATTCCCAAGAT
ATAAGATATGGTCACATGGACACCAGTGGTCGACTCGTGGATGTAGATCG
GGATAAGGGGGTCTTTAATTTTAAGGTACTCTCTTAGCGGAGATTATTCT
ATTTGGCCGGCGGTGCGTGCGCTATTCGCTTCCCGCCACCAAGTGCTGTC
GAAGAAAGCCATAGCTCAGAAGATGGAAGAACGGCGAGAGGAGGGGTTAC
AGCAGAAGATTGGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig51451:263..1779-

>mRNA_H-elongata_contig51451.12408.1 ID=mRNA_H-elongata_contig51451.12408.1|Name=mRNA_H-elongata_contig51451.12408.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig51451:263..1779- (Himanthalia elongata Himel1 dioecious)
ATGGCTTCGAGATTCAAACGACAACGAGATGGCTTCGAGATTCAAACGAC
AACGAGCGAAGGCCTCGAAGCCCAAACCTTCAACCCCGACGTTCGACGAC
GAAGACGACTATCTTTCGGCGGCGTTCGTTGTAGATAAGCCGAACCCTCC
GCGGGGCAAACGCGCAAGAGAAGAGGATCCCGAGCGTGGCAGAGCGAAGG
CCTCGAAGCCCAAACCTTCAACCCCGACGTTCGACGACGAAGACGACTAT
CTTTCGGCGGCGTTCGTTGTAGATAAGCCGAACCCTCCGCGGGGCAAACG
CGCAAGAGAAGAGGATCCCGAGCGTGGCAGAGTGCTGTCGAAGAAAGCCA
TAGCTCAGAAGATGGAAGAACGGCGAGAGGAGGGGTTACAGCAGAAGATT
GGAAAGTGCTGTCGAAGAAAGCCATAGCTCAGAAGATGGAAGAACGGCGA
GAGGAGGGGTTACAGCAGAAGATTGGAAAG
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