prot_H-elongata_contig51088.12370.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig51088.12370.1
Unique Nameprot_H-elongata_contig51088.12370.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length79
Homology
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: D7FNB2_ECTSI (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB2_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.030e-31
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 0
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 79
            R + RYYLP LFS GGK LTLA+AA LA LG  G+ GL+MGLEPQLAAPTDFYLQDYY+AQ S+GEAGPPAYVV +D+D
Sbjct:  940 RFIERYYLPALFSRGGKALTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQDYYDAQFSMGEAGPPAYVVFSDLD 1018          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: K8YSC8_NANGC (Niemann-Pick C1 protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSC8_NANGC)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 79
            R +++ YLP L S  GK     +   L +LG++G++ L +GLEPQLAAP+DFYL DYY  + +LGEAGPP Y+VL D+D
Sbjct:  223 RCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWGITTLELGLEPQLAAPSDFYLVDYYNTEFTLGEAGPPLYLVLKDLD 301          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: W7TJL6_9STRA (Patched family protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJL6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 0
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 79
            R +++ YLP L S  GK     +   L +LG++G++ L +GLEPQLAAP+DFYL DYY  + +LGEAGPP Y+VL D+D
Sbjct:  267 RCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWGITTLELGLEPQLAAPSDFYLVDYYNTEFTLGEAGPPLYLVLKDLD 345          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A4D9CZ93_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ93_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.840e-18
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    3 LNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 79
            +++ YLP L S  GK   + +   L +LG++G++ L +GLEPQLAAP+DFYL DYY  + + GEAGPP Y+V+ D+D
Sbjct:    1 MDKGYLPCLMSRAGKIAVVVVGLLLLMLGLWGITTLELGLEPQLAAPSDFYLVDYYNTEFTRGEAGPPLYLVVKDLD 77          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: H3GZV5_PHYRM (SSD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZV5_PHYRM)

HSP 1 Score: 81.6 bits (200), Expect = 2.620e-16
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 0
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL-TDVD 79
            R + + Y+P L     K L L IA  +  L  FG S L +GLE +LA PTDFYL +Y++ Q +LGEAGPPAYVVL  DVD
Sbjct:  553 RFVEKTYIPFLLRRSTKVLVLVIALSVLTLSAFGSSELPLGLEQELAVPTDFYLHEYFKKQTALGEAGPPAYVVLDNDVD 632          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A3R7XRB7_9STRA (SSD domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XRB7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.580e-16
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 0
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL 75
            R + + Y+P L     K L L IA  + +L  FG S L +GLE +LA PTDFYL +Y++ Q +LGEAGPPAYVVL
Sbjct:  520 RFVEKTYIPFLLRRSTKVLVLVIAFAILILSAFGSSKLPLGLEQELAVPTDFYLHEYFKKQTALGEAGPPAYVVL 594          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A6A3P324_9STRA (SSD domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P324_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.680e-16
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 0
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL-TDVD 79
            R + + Y+P L     K L L  A  +  L  FG S L +GLE +LA PTDFYL +Y++ Q +LGEAGPPAYVVL +DVD
Sbjct:  557 RFVEKTYIPFLLRRSTKVLVLVTALSIITLSAFGSSELPLGLEQELAVPTDFYLHEYFKKQTALGEAGPPAYVVLDSDVD 636          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A835YXX1_9STRA (SSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.710e-16
Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 0
Query:    3 LNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL 75
            + R+YLP L S GGK +TL  AA L   G  G   + +GLEPQLAAP D  LQ YY  Q +LGEAGPPAY+ +
Sbjct:  801 MERWYLPALLSRGGKAVTLLAAAALVACGGVGARRMPLGLEPQLAAPLDSPLQAYYRDQFALGEAGPPAYIFV 873          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: D0NHB7_PHYIT (Resistance-Nodulation-Cell Division (RND) Superfamily n=14 Tax=Phytophthora TaxID=4783 RepID=D0NHB7_PHYIT)

HSP 1 Score: 78.2 bits (191), Expect = 4.330e-15
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 0
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL-TDVD 79
            R + R Y+P L     K + L  A     L  FG S L +GLE +LA PTDFYL +Y++ Q +LGEAGPPAYVVL +DVD
Sbjct:  523 RFVERTYIPFLLRRSTKVVVLVTAVLTLTLSAFGSSELPLGLEQELAVPTDFYLHEYFKKQTALGEAGPPAYVVLDSDVD 602          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A421G8C8_9STRA (SSD domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G8C8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.940e-15
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 0
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL-TDVD 79
            R + + Y+P L     K + L  A  +  +   G S L +GLE QLA PTDFYL  Y++ Q +LGEAGPPAYVVL +DVD
Sbjct:  691 RFMEKTYIPFLLQRSTKVVVLVTALSILTISALGSSHLPLGLEQQLAVPTDFYLHQYFQKQTALGEAGPPAYVVLDSDVD 770          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNB2_ECTSI1.030e-3174.68SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
K8YSC8_NANGC1.300e-1851.90Niemann-Pick C1 protein n=1 Tax=Nannochloropsis ga... [more]
W7TJL6_9STRA1.300e-1851.90Patched family protein (Fragment) n=1 Tax=Nannochl... [more]
A0A4D9CZ93_9STRA7.840e-1849.35Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
H3GZV5_PHYRM2.620e-1652.50SSD domain-containing protein n=1 Tax=Phytophthora... [more]
A0A3R7XRB7_9STRA3.580e-1652.00SSD domain-containing protein n=1 Tax=Peronospora ... [more]
A0A6A3P324_9STRA6.680e-1651.25SSD domain-containing protein n=8 Tax=Phytophthora... [more]
A0A835YXX1_9STRA6.710e-1654.79SSD domain-containing protein n=1 Tax=Tribonema mi... [more]
D0NHB7_PHYIT4.330e-1551.25Resistance-Nodulation-Cell Division (RND) Superfam... [more]
A0A421G8C8_9STRA5.940e-1548.75SSD domain-containing protein n=4 Tax=Phytophthora... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR45727:SF2NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1coord: 2..76
NoneNo IPR availablePANTHERPTHR45727FAMILY NOT NAMEDcoord: 2..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 18..38
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51088contigH-elongata_contig51088:1248..1989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51088.12370.1mRNA_H-elongata_contig51088.12370.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig51088 1248..1989 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig51088.12370.1 ID=prot_H-elongata_contig51088.12370.1|Name=mRNA_H-elongata_contig51088.12370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPT
DFYLQDYYEAQISLGEAGPPAYVVLTDVD
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