mRNA_H-elongata_contig50779.12329.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50779.12329.1
Unique NamemRNA_H-elongata_contig50779.12329.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50779.12329.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.080e-11
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   85 VEADVPSGERYEDLSRKVEEEVVAKLARAQMMGMMLKAHRDQ 210
            V+ADVPS ERYED+SR+VEEEVVAKLARAQMMGMMLKAHR+Q
Sbjct:   92 VDADVPSEERYEDMSRRVEEEVVAKLARAQMMGMMLKAHREQ 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50779.12329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G542_ECTSI2.080e-1188.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50779contigH-elongata_contig50779:720..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue3.7e-10
Seed eggNOG ortholog2880.D7G542
Preferred nameEBS1
KEGG koko:K11124,ko:K11132,ko:K18668
KEGG Pathwayko03015,map03015
GOsGO:0000018,GO:0000019,GO:0000184,GO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005697,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010639,GO:0010833,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034399,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0042162,GO:0042592,GO:0042886,GO:0043021,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045184,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046907,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051641,GO:0051649,GO:0060249,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071919,GO:0072695,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098687,GO:0098847,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1904356,GO:1904358,GO:1905324,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.zinc finger CCCH-type containing
EggNOG OGsKOG2162@1,KOG2162@2759,KOG3777@1,KOG3777@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03032
Hectar predicted targeting categoryother localisation
Exons1
Model size481
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930833.2865539-CDS-H-elongata_contig50779:719..11961622930833.2865539-CDS-H-elongata_contig50779:719..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50779 720..1196 +
1691679590.0721958-CDS-H-elongata_contig50779:719..11961691679590.0721958-CDS-H-elongata_contig50779:719..1196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50779 720..1196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50779.12329.1prot_H-elongata_contig50779.12329.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50779 720..1196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50779.12329.1

>prot_H-elongata_contig50779.12329.1 ID=prot_H-elongata_contig50779.12329.1|Name=mRNA_H-elongata_contig50779.12329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
RGSSRASSTAAVTTSEARSVGGPPAPDEVEADVPSGERYEDLSRKVEEEV
VAKLARAQMMGMMLKAHRDQQHQQQHHGNHALEKRRARGGVRRDGGSISV
SGSGSSTVNNSRRSRAGSSRQRGGPSPNPSATAISPAAAAAPTRRLTSDT
RVGAKIAAG
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mRNA from alignment at H-elongata_contig50779:720..1198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50779.12329.1 ID=mRNA_H-elongata_contig50779.12329.1|Name=mRNA_H-elongata_contig50779.12329.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=479bp|location=Sequence derived from alignment at H-elongata_contig50779:720..1198+ (Himanthalia elongata Himel1 dioecious)
CGAGGGAGCTCAAGGGCTTCTTCTACCGCTGCAGTAACGACAAGTGAGGC
CCGGAGCGTTGGCGGCCCTCCTGCTCCTGACGAGGTGGAGGCGGACGTCC
CCTCCGGAGAGCGCTACGAGGACTTGTCGCGAAAGGTTGAGGAGGAGGTC
GTGGCAAAGCTCGCGCGCGCGCAAATGATGGGGATGATGCTCAAGGCTCA
CAGGGACCAACAACACCAGCAGCAGCACCATGGGAACCATGCCCTTGAGA
AGCGCCGTGCTAGAGGAGGAGTTCGTAGAGATGGGGGAAGCATCAGCGTC
AGTGGAAGCGGCAGCAGTACGGTTAACAATAGCAGGAGGTCTCGAGCCGG
AAGCAGCAGGCAACGCGGAGGTCCGTCGCCCAATCCTTCGGCTACTGCCA
TCTCCCCAGCCGCCGCTGCTGCACCAACTCGAAGGCTTACGTCGGACACC
CGGGTCGGCGCCAAGATTGCGGCCGGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig50779:720..1198+

>mRNA_H-elongata_contig50779.12329.1 ID=mRNA_H-elongata_contig50779.12329.1|Name=mRNA_H-elongata_contig50779.12329.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig50779:720..1198+ (Himanthalia elongata Himel1 dioecious)
CGAGGGAGCTCAAGGGCTTCTTCTACCGCTGCAGTAACGACAAGTGAGGC
CCGGAGCGTTGGCGGCCCTCCTGCTCCTGACGAGGTGGAGGCGGACGTCC
CCTCCGGAGAGCGCTACGAGGACTTGTCGCGAAAGGTTGAGGAGGAGGTC
GTGGCAAAGCTCGCGCGCGCGCAAATGATGGGGATGATGCTCAAGGCTCA
CAGGGACCAACAACACCAGCAGCAGCACCATGGGAACCATGCCCTTGAGA
AGCGCCGTGCTAGAGGAGGAGTTCGTAGAGATGGGGGAAGCATCAGCGTC
AGTGGAAGCGGCAGCAGTACGGTTAACAATAGCAGGAGGTCTCGAGCCGG
AAGCAGCAGGCAACGCGGAGGTCCGTCGCCCAATCCTTCGGCTACTGCCA
TCTCCCCAGCCGCCGCTGCTGCACCAACTCGAAGGCTTACGTCGGACACC
CGGGTCGGCGCCAAGATTGCGGCCGGGCGAGGGAGCTCAAGGGCTTCTTC
TACCGCTGCAGTAACGACAAGTGAGGCCCGGAGCGTTGGCGGCCCTCCTG
CTCCTGACGAGGTGGAGGCGGACGTCCCCTCCGGAGAGCGCTACGAGGAC
TTGTCGCGAAAGGTTGAGGAGGAGGTCGTGGCAAAGCTCGCGCGCGCGCA
AATGATGGGGATGATGCTCAAGGCTCACAGGGACCAACAACACCAGCAGC
AGCACCATGGGAACCATGCCCTTGAGAAGCGCCGTGCTAGAGGAGGAGTT
CGTAGAGATGGGGGAAGCATCAGCGTCAGTGGAAGCGGCAGCAGTACGGT
TAACAATAGCAGGAGGTCTCGAGCCGGAAGCAGCAGGCAACGCGGAGGTC
CGTCGCCCAATCCTTCGGCTACTGCCATCTCCCCAGCCGCCGCTGCTGCA
CCAACTCGAAGGCTTACGTCGGACACCCGGGTCGGCGCCAAGATTGCGGC
CGGG
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