prot_H-elongata_contig50435.12282.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50435.12282.1
Unique Nameprot_H-elongata_contig50435.12282.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length66
Homology
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: D7G354_ECTSI (COP9 signalosome complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G354_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.270e-21
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 0
Query:   10 TLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQK 65
            TL  +   QAE+VAARMITEGRLRGTIDQ+EGLLQFEGD DELQ+WDERVN+LCQK
Sbjct:  337 TLLQIPCEQAERVAARMITEGRLRGTIDQVEGLLQFEGDHDELQNWDERVNILCQK 392          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A067CJ66_SAPPC (COP9 signalosome complex subunit 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ66_SAPPC)

HSP 1 Score: 70.1 bits (170), Expect = 1.620e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 0
Query:   10 TLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLC 63
            TL  +DA +AEKVAA MI+E R++G+IDQ+ GLL+FE D D LQ WD+R+N +C
Sbjct:  325 TLLGVDAKKAEKVAAIMISEDRMKGSIDQVNGLLEFEQDGDVLQGWDDRINAIC 378          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A2R6WN54_MARPO (PCI domain-containing protein n=3 Tax=Embryophyta TaxID=3193 RepID=A0A2R6WN54_MARPO)

HSP 1 Score: 68.9 bits (167), Expect = 4.200e-12
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 0
Query:   11 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 64
            L  +   +AEK+AARMI+E R+RG+IDQ+EG++ FE D++ELQ WD+++  +CQ
Sbjct:  334 LLGIGPQKAEKIAARMISEDRMRGSIDQVEGVIHFENDIEELQQWDQQIVSICQ 387          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A176VJ99_MARPO (PCI domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VJ99_MARPO)

HSP 1 Score: 68.9 bits (167), Expect = 4.410e-12
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 0
Query:   11 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 64
            L  +   +AEK+AARMI+E R+RG+IDQ+EG++ FE D++ELQ WD+++  +CQ
Sbjct:  406 LLGIGPQKAEKIAARMISEDRMRGSIDQVEGVIHFENDIEELQQWDQQIVSICQ 459          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A6V1T605_HETAK (COP9 signalosome complex subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T605_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 5.720e-12
Identity = 29/53 (54.72%), Postives = 43/53 (81.13%), Query Frame = 0
Query:   11 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLC 63
            L  ++A +AEKVAA+MITEGRL+ +IDQIEG+LQFE D + ++ WD+ ++ +C
Sbjct:  327 LLGIEADKAEKVAAKMITEGRLKASIDQIEGILQFEEDTNTMESWDDHISRIC 379          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A6V7Q437_ANACO (PCI domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7Q437_ANACO)

HSP 1 Score: 65.5 bits (158), Expect = 6.840e-12
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 0
Query:   10 TLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 64
            TL  +   +AEK+A+RMI E R+RG+IDQ+E ++ FE D++ELQ WD+++  LCQ
Sbjct:   72 TLLGIPPEKAEKIASRMIYEDRMRGSIDQVEAVIHFEDDMEELQQWDQQIVGLCQ 126          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A7S3UA10_9CHLO (COP9 signalosome complex subunit 4 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UA10_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 7.820e-12
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 0
Query:   11 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 64
            L  +D  +AE++AARM+TEGR+ GTIDQ+EG++ F    DE + WD R++ LCQ
Sbjct:  327 LLGVDMAKAERIAARMVTEGRMAGTIDQVEGIIYFRSSQDEQRSWDSRIHTLCQ 380          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: UPI000B7748DD (COP9 signalosome complex subunit 4-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B7748DD)

HSP 1 Score: 63.5 bits (153), Expect = 1.170e-11
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 0
Query:   18 QAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 64
            QAEK+A+RMI E R+RG+IDQ+E ++ FE D +ELQ WD+++  LCQ
Sbjct:   28 QAEKIASRMIYEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQ 74          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A7S0RNC8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RNC8_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 1.540e-11
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 0
Query:   11 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLC 63
            L  +DA +AEKVAARMITE R++G+IDQ+EG++ F  D++EL  WD ++  LC
Sbjct:  395 LLGIDANKAEKVAARMITEERMQGSIDQVEGIIHFANDVEELAQWDTQIQSLC 447          
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: K4AAU7_SETIT (PCI domain-containing protein n=25 Tax=Panicoideae TaxID=147369 RepID=K4AAU7_SETIT)

HSP 1 Score: 67.0 bits (162), Expect = 2.010e-11
Identity = 28/55 (50.91%), Postives = 43/55 (78.18%), Query Frame = 0
Query:   10 TLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 64
            TL  +D  +AEK+A+RMI E R+RG+IDQ+E ++ F+ D +ELQ WD++++ LCQ
Sbjct:  327 TLLGIDPRKAEKIASRMIYEDRMRGSIDQVEAVIHFDDDTEELQQWDQQISGLCQ 381          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G354_ECTSI1.270e-2180.36COP9 signalosome complex subunit 4 n=1 Tax=Ectocar... [more]
A0A067CJ66_SAPPC1.620e-1259.26COP9 signalosome complex subunit 4 n=2 Tax=Saprole... [more]
A0A2R6WN54_MARPO4.200e-1251.85PCI domain-containing protein n=3 Tax=Embryophyta ... [more]
A0A176VJ99_MARPO4.410e-1251.85PCI domain-containing protein n=1 Tax=Marchantia p... [more]
A0A6V1T605_HETAK5.720e-1254.72COP9 signalosome complex subunit 4 n=1 Tax=Heteros... [more]
A0A6V7Q437_ANACO6.840e-1250.91PCI domain-containing protein n=1 Tax=Ananas comos... [more]
A0A7S3UA10_9CHLO7.820e-1251.85COP9 signalosome complex subunit 4 n=1 Tax=Picocys... [more]
UPI000B7748DD1.170e-1157.45COP9 signalosome complex subunit 4-like n=1 Tax=He... [more]
A0A7S0RNC8_9CHLO1.540e-1154.72Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
K4AAU7_SETIT2.010e-1150.91PCI domain-containing protein n=25 Tax=Panicoideae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 11..46
e-value: 1.6E-5
score: 25.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 2..47
e-value: 1.8E-11
score: 45.8
IPR04013426S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4PANTHERPTHR1085526S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4coord: 10..65
IPR037754COP9 signalosome complex subunit 4PANTHERPTHR10855:SF2COP9 SIGNALOSOME COMPLEX SUBUNIT 4coord: 10..65
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 11..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50435contigH-elongata_contig50435:1095..2032 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50435.12282.1mRNA_H-elongata_contig50435.12282.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50435 1095..2032 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50435.12282.1 ID=prot_H-elongata_contig50435.12282.1|Name=mRNA_H-elongata_contig50435.12282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
TNTSNNSPPTLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLD
ELQHWDERVNLLCQK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR036388WH-like_DNA-bd_sf
IPR040134PSMD12/CSN4
IPR037754CSN4
IPR036390WH_DNA-bd_sf