mRNA_H-elongata_contig50435.12282.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50435.12282.1
Unique NamemRNA_H-elongata_contig50435.12282.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: D7G354_ECTSI (COP9 signalosome complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G354_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.270e-21
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:   28 TLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQK 195
            TL  +   QAE+VAARMITEGRLRGTIDQ+EGLLQFEGD DELQ+WDERVN+LCQK
Sbjct:  337 TLLQIPCEQAERVAARMITEGRLRGTIDQVEGLLQFEGDHDELQNWDERVNILCQK 392
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BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A067CJ66_SAPPC (COP9 signalosome complex subunit 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ66_SAPPC)

HSP 1 Score: 70.1 bits (170), Expect = 1.620e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   28 TLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLC 189
            TL  +DA +AEKVAA MI+E R++G+IDQ+ GLL+FE D D LQ WD+R+N +C
Sbjct:  325 TLLGVDAKKAEKVAAIMISEDRMKGSIDQVNGLLEFEQDGDVLQGWDDRINAIC 378
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BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A2R6WN54_MARPO (PCI domain-containing protein n=3 Tax=Embryophyta TaxID=3193 RepID=A0A2R6WN54_MARPO)

HSP 1 Score: 68.9 bits (167), Expect = 4.200e-12
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   31 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 192
            L  +   +AEK+AARMI+E R+RG+IDQ+EG++ FE D++ELQ WD+++  +CQ
Sbjct:  334 LLGIGPQKAEKIAARMISEDRMRGSIDQVEGVIHFENDIEELQQWDQQIVSICQ 387
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BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A176VJ99_MARPO (PCI domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VJ99_MARPO)

HSP 1 Score: 68.9 bits (167), Expect = 4.410e-12
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   31 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 192
            L  +   +AEK+AARMI+E R+RG+IDQ+EG++ FE D++ELQ WD+++  +CQ
Sbjct:  406 LLGIGPQKAEKIAARMISEDRMRGSIDQVEGVIHFENDIEELQQWDQQIVSICQ 459
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BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A6V1T605_HETAK (COP9 signalosome complex subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T605_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 5.720e-12
Identity = 29/53 (54.72%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   31 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLC 189
            L  ++A +AEKVAA+MITEGRL+ +IDQIEG+LQFE D + ++ WD+ ++ +C
Sbjct:  327 LLGIEADKAEKVAAKMITEGRLKASIDQIEGILQFEEDTNTMESWDDHISRIC 379
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BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A6V7Q437_ANACO (PCI domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7Q437_ANACO)

HSP 1 Score: 65.5 bits (158), Expect = 6.840e-12
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   28 TLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 192
            TL  +   +AEK+A+RMI E R+RG+IDQ+E ++ FE D++ELQ WD+++  LCQ
Sbjct:   72 TLLGIPPEKAEKIASRMIYEDRMRGSIDQVEAVIHFEDDMEELQQWDQQIVGLCQ 126
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BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A7S3UA10_9CHLO (COP9 signalosome complex subunit 4 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UA10_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 7.820e-12
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   31 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 192
            L  +D  +AE++AARM+TEGR+ GTIDQ+EG++ F    DE + WD R++ LCQ
Sbjct:  327 LLGVDMAKAERIAARMVTEGRMAGTIDQVEGIIYFRSSQDEQRSWDSRIHTLCQ 380
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BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: UPI000B7748DD (COP9 signalosome complex subunit 4-like n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B7748DD)

HSP 1 Score: 63.5 bits (153), Expect = 1.170e-11
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   52 QAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 192
            QAEK+A+RMI E R+RG+IDQ+E ++ FE D +ELQ WD+++  LCQ
Sbjct:   28 QAEKIASRMIYEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQ 74
[Close]
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: A0A7S0RNC8_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RNC8_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 1.540e-11
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   31 LADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLC 189
            L  +DA +AEKVAARMITE R++G+IDQ+EG++ F  D++EL  WD ++  LC
Sbjct:  395 LLGIDANKAEKVAARMITEERMQGSIDQVEGIIHFANDVEELAQWDTQIQSLC 447
[Close]
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Match: K4AAU7_SETIT (PCI domain-containing protein n=25 Tax=Panicoideae TaxID=147369 RepID=K4AAU7_SETIT)

HSP 1 Score: 67.0 bits (162), Expect = 2.010e-11
Identity = 28/55 (50.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   28 TLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLDELQHWDERVNLLCQ 192
            TL  +D  +AEK+A+RMI E R+RG+IDQ+E ++ F+ D +ELQ WD++++ LCQ
Sbjct:  327 TLLGIDPRKAEKIASRMIYEDRMRGSIDQVEAVIHFDDDTEELQQWDQQISGLCQ 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50435.12282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G354_ECTSI1.270e-2180.36COP9 signalosome complex subunit 4 n=1 Tax=Ectocar... [more]
A0A067CJ66_SAPPC1.620e-1259.26COP9 signalosome complex subunit 4 n=2 Tax=Saprole... [more]
A0A2R6WN54_MARPO4.200e-1251.85PCI domain-containing protein n=3 Tax=Embryophyta ... [more]
A0A176VJ99_MARPO4.410e-1251.85PCI domain-containing protein n=1 Tax=Marchantia p... [more]
A0A6V1T605_HETAK5.720e-1254.72COP9 signalosome complex subunit 4 n=1 Tax=Heteros... [more]
A0A6V7Q437_ANACO6.840e-1250.91PCI domain-containing protein n=1 Tax=Ananas comos... [more]
A0A7S3UA10_9CHLO7.820e-1251.85COP9 signalosome complex subunit 4 n=1 Tax=Picocys... [more]
UPI000B7748DD1.170e-1157.45COP9 signalosome complex subunit 4-like n=1 Tax=He... [more]
A0A7S0RNC8_9CHLO1.540e-1154.72Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
K4AAU7_SETIT2.010e-1150.91PCI domain-containing protein n=25 Tax=Panicoideae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50435contigH-elongata_contig50435:1095..2032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.7e-18
Seed eggNOG ortholog2880.D7G354
Preferred nameCOPS4
KEGG koko:K02930,ko:K12178
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000003,GO:0000338,GO:0000715,GO:0001067,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002009,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007346,GO:0007399,GO:0007423,GO:0008021,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008234,GO:0009653,GO:0009887,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010389,GO:0010564,GO:0010605,GO:0010971,GO:0012505,GO:0016043,GO:0016333,GO:0016604,GO:0016607,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019784,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030054,GO:0030133,GO:0030154,GO:0030162,GO:0030182,GO:0030718,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0036099,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0044703,GO:0045202,GO:0045787,GO:0045861,GO:0045931,GO:0046483,GO:0046530,GO:0048138,GO:0048140,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048592,GO:0048609,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051276,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060429,GO:0061136,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070382,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0090596,GO:0097159,GO:0097458,GO:0097708,GO:0098727,GO:0098793,GO:0099503,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901799,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:2000058,GO:2000059
EggNOG free text desc.protein deneddylation
EggNOG OGsKOG1497@1,KOG1497@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.299909-CDS-H-elongata_contig50435:1094..11501622930829.299909-CDS-H-elongata_contig50435:1094..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50435 1095..1150 -
1691679588.369877-CDS-H-elongata_contig50435:1094..11501691679588.369877-CDS-H-elongata_contig50435:1094..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50435 1095..1150 -
1622930829.3121314-CDS-H-elongata_contig50435:1890..20321622930829.3121314-CDS-H-elongata_contig50435:1890..2032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50435 1891..2032 -
1691679588.3903944-CDS-H-elongata_contig50435:1890..20321691679588.3903944-CDS-H-elongata_contig50435:1890..2032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50435 1891..2032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50435.12282.1prot_H-elongata_contig50435.12282.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50435 1095..2032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50435.12282.1

>prot_H-elongata_contig50435.12282.1 ID=prot_H-elongata_contig50435.12282.1|Name=mRNA_H-elongata_contig50435.12282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
TNTSNNSPPTLADLDAPQAEKVAARMITEGRLRGTIDQIEGLLQFEGDLD
ELQHWDERVNLLCQK*
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mRNA from alignment at H-elongata_contig50435:1095..2032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50435.12282.1 ID=mRNA_H-elongata_contig50435.12282.1|Name=mRNA_H-elongata_contig50435.12282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=938bp|location=Sequence derived from alignment at H-elongata_contig50435:1095..2032- (Himanthalia elongata Himel1 dioecious)
ACGAATACTTCGAATAACTCCCCCCCCACCTTGGCTGACCTTGACGCGCC
TCAGGCGGAGAAGGTGGCGGCGAGGATGATCACCGAGGGGCGGCTTCGAG
GAACGATCGACCAGATTGAGGGACTCCTTCAGTTCGAGGGAGGTGACCAC
CGGCAACGACTAGCGTCGCTCTGCGAAAGTGTTTCTTTTTTTTGCTCGAT
GTAGCCGGTTCCTTGTTGTGCACAGTAGTTTGGTGGTTCGCTGCTGTCGT
CTGGTGCGGGGACGGGGACGGGGGAAGGGGGGGGGGGGGGCGTCCCTATA
TGATGAATAATGTAAGTGTACGGGATAATAATGGGATCCCGGGCATGAAA
TCGTCGACCCGATGGCGTTGCTATGGGACCACACAACTAATCACGTGTGA
CGATTTTGTGCTCAAAGGTATCTAGTAATAATGTACACATTCGAACCTTT
ACGATAGTTGGTCCCCTGGACTGCTGCACCTCTCACGGTCCGCTGCTAAG
AAGGCGTGGATGTTCGGAGGGTTGGAATGAGTTCACATGTTTTTAAAGAG
AAATATCGAATACTGAATATAAGATAAACAGAGGCCCGATGATTATTAGG
TTGGCATCTCAAGTAATTGCAGTAGTAACCTGATGTAAAAAAAATCCAGT
CCGTAGTTACAAGGTAGAAAGGGACAAAAAATAACGCCTCTTTTGATAGG
ACAAAAAAAGAAAGGACACAGTTGGCCCTGGCCTTGCTTCTGCTGCCCCT
GACTCTTATTTTTCGTTCCCAGACTTGCTCTCTGACCGCTCCGGCCTCTC
GCTCCCGGTTGTTTTCGCCTTTCGCGCTATCGTGATCGCTCTATGCTTAT
GGTGGTCGTTACCATGCAAAACTGAACGAAAGACTTGGATGAGCTACAGC
ACTGGGACGAGAGAGTGAACCTCCTGTGTCAGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50435:1095..2032-

>mRNA_H-elongata_contig50435.12282.1 ID=mRNA_H-elongata_contig50435.12282.1|Name=mRNA_H-elongata_contig50435.12282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig50435:1095..2032- (Himanthalia elongata Himel1 dioecious)
ACGAATACTTCGAATAACTCCCCCCCCACCTTGGCTGACCTTGACGCGCC
TCAGGCGGAGAAGGTGGCGGCGAGGATGATCACCGAGGGGCGGCTTCGAG
GAACGATCGACCAGATTGAGGGACTCCTTCAGTTCGAGGGAGACGAATAC
TTCGAATAACTCCCCCCCCACCTTGGCTGACCTTGACGCGCCTCAGGCGG
AGAAGGTGGCGGCGAGGATGATCACCGAGGGGCGGCTTCGAGGAACGATC
GACCAGATTGAGGGACTCCTTCAGTTCGAGGGAGACTTGGATGAGCTACA
GCACTGGGACGAGAGAGTGAACCTCCTGTGTCAGAAGTGAACTTGGATGA
GCTACAGCACTGGGACGAGAGAGTGAACCTCCTGTGTCAGAAGTGA
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