prot_H-elongata_contig50395.12274.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50395.12274.1
Unique Nameprot_H-elongata_contig50395.12274.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length251
Homology
BLAST of mRNA_H-elongata_contig50395.12274.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.730e-30
Identity = 123/343 (35.86%), Postives = 163/343 (47.52%), Query Frame = 0
Query:    1 VNERFEQLLRVLEEAEATSGLEPAPTPEGQTAANACVNGRRVEVLSRTITVLKKLMREKTKSLSVF---AED-------GNSHG------EGKSGDSAIAS---------------------------GVMEANSAAATGS-TQAPPT-------------------QQHIALRLH-EHSSLSMPTGFMGMPNIGVSQMNASLAAAGIPQGLSGQPVFIAVPVFMPPGQGLSSV----------DNPGQAPGAT-VLAPVV---------------NVTPETGEKAVVDAGGANVPMTKELK---MPPDVNLESMISLQMPQFVTEVLATDEGDEKPTHAVCA 250
            VNE+F+QLL+VLEEAEATSGLEP    +G+TAA+AC+NGRRVEVLSRTI V+KKL+RE+ ++L+     A+D       G S+G      EG   D    S                            V+++N AAA G+  QA                        H+A+ +   H S+ M  GF G+P   V          GIP G  G P+F AVP+++P GQG+  V          ++  Q P AT V AP +                           DA  A VP     K   +P  +  +SM++LQMPQFVT+ L+ +EG EKPTHAVCA
Sbjct:  234 VNEKFDQLLQVLEEAEATSGLEPPAAKDGKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPPADDTLAAVAAGISNGWQEETAEGPVLDGGFRSEVEENXXXXXXXXXXXXXXXXXXXXTRDVIDSNEAAAEGADAQAEAAIAATMVXXXEGXXAKHHSVMHHVAMSVSGHHPSMMMAPGFTGVPGHPVPS-----PPHGIP-GHPGGPIFFAVPMYIPQGQGMPPVAASTATTAAAEHAAQVPAATAVAAPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXDATEA-VPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEKPTHAVCA 569          
BLAST of mRNA_H-elongata_contig50395.12274.1 vs. uniprot
Match: D7FS24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS24_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.090e-8
Identity = 55/176 (31.25%), Postives = 75/176 (42.61%), Query Frame = 0
Query:  107 HIALRLH-EHSSLSMPTGFMGMPNIGVSQMNASLAAAGIPQGLSGQPVFIAVPVFMPPGQGLSSV----------------------------DNPGQAPGATVLAPVVNVTPETGEKAVVDAGGANVPMTKELK---MPPDVNLESMISLQMPQFVTEVLATDEGDEKPTHAVCA 250
            H+A+ +   H S+ M  GF G+P   V          GIP G  G P+F AVP+++P GQG+ +                                                       VVDA  A VP     K   +P  +  +SM++LQMPQFVT+ L+ +EG+EKPTHAVCA
Sbjct:    3 HVAMSVSGHHPSMMMAPGFTGVPGHSVPSPQH-----GIP-GHPGGPIFFAVPMYIPQGQGMPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGVVDATEA-VPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGNEKPTHAVCA 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50395.12274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE6.730e-3035.86BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FS24_ECTSI2.090e-831.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50395contigH-elongata_contig50395:3090..3842 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50395.12274.1mRNA_H-elongata_contig50395.12274.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50395 3090..3842 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50395.12274.1 ID=prot_H-elongata_contig50395.12274.1|Name=mRNA_H-elongata_contig50395.12274.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
VNERFEQLLRVLEEAEATSGLEPAPTPEGQTAANACVNGRRVEVLSRTIT
VLKKLMREKTKSLSVFAEDGNSHGEGKSGDSAIASGVMEANSAAATGSTQ
APPTQQHIALRLHEHSSLSMPTGFMGMPNIGVSQMNASLAAAGIPQGLSG
QPVFIAVPVFMPPGQGLSSVDNPGQAPGATVLAPVVNVTPETGEKAVVDA
GGANVPMTKELKMPPDVNLESMISLQMPQFVTEVLATDEGDEKPTHAVCA
*
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