prot_H-elongata_contig50025.12225.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig50025.12225.1
Unique Nameprot_H-elongata_contig50025.12225.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length193
Homology
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BLAST of mRNA_H-elongata_contig50025.12225.1 vs. uniprot
Match: A0A6H5K8D7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D7_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 7.630e-47
Identity = 93/199 (46.73%), Postives = 116/199 (58.29%), Query Frame = 0 
Query:    1 MDPHPCQFFLWDSQSAVKFCECSRLLKSTATTSLWEDKHNQLWLQMPYTSRLLRLFPCQQHSLSRCARCGHEYWEHVRWAAQRRRDRPFEKLLERTSKGVSNETPLDYRGASVLVYSKTASGRGTRVDTPKDGL--------------------RGGPGN---WGSMLAVFAEAQRTSTFQTSGISVTSAAARATFEEV 176
            MD  PC++FLWD  SA +FCEC+R L+S A  +LWED H QLWL++P++S LLRLFPCQQHSL+RCA+CGHEY  HV    +RR+D  ++K +   ++ V      DYRG SV    K  S    RVD     L                     GG GN   W   LAV AEAQR +  QTSGI+VTS  AR+ F+ V
Sbjct:   45 MDAVPCRWFLWDVASAARFCECTRHLESVADQTLWEDSHGQLWLRVPFSSPLLRLFPCQQHSLTRCAKCGHEYRAHVEHTLKRRKDGDYDKFIRDHARRVGGRGAQDYRGGSVFSDQKRTSRE--RVDASVGSLGSSSGNGNNSXXXXXXXXXXXGGIGNGSGWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAV 241
[Close]
BLAST of mRNA_H-elongata_contig50025.12225.1 vs. uniprot
Match: A0A7S1C0U4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C0U4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.150e-6
Identity = 33/123 (26.83%), Postives = 61/123 (49.59%), Query Frame = 0 
Query:    5 PCQFFLWDSQSAVKFCECSRLLKSTATTSLWEDKHNQLWLQMPYTSRLLRLFPCQQHSLSRCARCGHEYWEHVR--WAAQRRRDRPFEKLLERT---SKGVSNETPLDYRGASVLVYSKTASG 122
            PC  F+WD  SA+K+  C  L++      L+E    + +++    S L  L+PC  HS + C+ CGH + +H+   W ++R     ++  L++T   +K  ++    D+     +  S  +SG
Sbjct:  118 PCNIFIWDGFSAMKYHVCRNLVQKY----LYEGMGGKKFIRTQPGSVLDTLYPCTNHSPNACSICGHTFQDHLLFWWKSRRNEKSDYDLHLDKTYFRAKAWADGNSTDFNDDKFVPNSTRSSG 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50025.12225.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8D7_9PHAE7.630e-4746.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1C0U4_9STRA7.150e-626.83Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50025contigH-elongata_contig50025:2659..3915 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50025.12225.1mRNA_H-elongata_contig50025.12225.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig50025 2101..3946 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig50025.12225.1 ID=prot_H-elongata_contig50025.12225.1|Name=mRNA_H-elongata_contig50025.12225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
MDPHPCQFFLWDSQSAVKFCECSRLLKSTATTSLWEDKHNQLWLQMPYTS
RLLRLFPCQQHSLSRCARCGHEYWEHVRWAAQRRRDRPFEKLLERTSKGV
SNETPLDYRGASVLVYSKTASGRGTRVDTPKDGLRGGPGNWGSMLAVFAE
AQRTSTFQTSGISVTSAAARATFEEVKNLKAATASIKKGTKK*
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