mRNA_H-elongata_contig50025.12225.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50025.12225.1
Unique NamemRNA_H-elongata_contig50025.12225.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50025.12225.1 vs. uniprot
Match: A0A6H5K8D7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D7_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.650e-52
Identity = 102/209 (48.80%), Postives = 125/209 (59.81%), Query Frame = 2 
Query:    2 RPQWPVPDHRMDPHPCQFFLWDSQSAVKFCECSRLLKSTATTSLWEDKHNQLWLQMPYTSRLLRLFPCQQHSLSRCARCGHEYWEHVRWAAQRRRDRPFEKLLERTSKGVSNETPLDYRGASVLVYSKTASGRGTRVDTPKDGL--------------------RGGPGN---WGSMLAVFAEAQRTSTFQTSGISVTSAAARATFEEV 559
            RPQWPVP HRMD  PC++FLWD  SA +FCEC+R L+S A  +LWED H QLWL++P++S LLRLFPCQQHSL+RCA+CGHEY  HV    +RR+D  ++K +   ++ V      DYRG SV    K  S    RVD     L                     GG GN   W   LAV AEAQR +  QTSGI+VTS  AR+ F+ V
Sbjct:   35 RPQWPVPGHRMDAVPCRWFLWDVASAARFCECTRHLESVADQTLWEDSHGQLWLRVPFSSPLLRLFPCQQHSLTRCAKCGHEYRAHVEHTLKRRKDGDYDKFIRDHARRVGGRGAQDYRGGSVFSDQKRTSRE--RVDASVGSLGSSSGNGNNSXXXXXXXXXXXGGIGNGSGWRRRLAVLAEAQRAALLQTSGIAVTSETARSAFKAV 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50025.12225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8D7_9PHAE1.650e-5248.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50025contigH-elongata_contig50025:2101..3946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003510.1
Exons3
Model size1168
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50025.12225.1prot_H-elongata_contig50025.12225.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50025 2659..3915 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.6649206-UTR-H-elongata_contig50025:2100..26581622930823.6649206-UTR-H-elongata_contig50025:2100..2658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50025 2101..2658 -
1691679585.9266503-UTR-H-elongata_contig50025:2100..26581691679585.9266503-UTR-H-elongata_contig50025:2100..2658Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50025 2101..2658 -
1622930823.7339215-UTR-H-elongata_contig50025:3915..39461622930823.7339215-UTR-H-elongata_contig50025:3915..3946Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50025 3916..3946 -
1691679585.9571998-UTR-H-elongata_contig50025:3915..39461691679585.9571998-UTR-H-elongata_contig50025:3915..3946Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50025 3916..3946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.6852856-CDS-H-elongata_contig50025:2658..29641622930823.6852856-CDS-H-elongata_contig50025:2658..2964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50025 2659..2964 -
1691679585.934215-CDS-H-elongata_contig50025:2658..29641691679585.934215-CDS-H-elongata_contig50025:2658..2964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50025 2659..2964 -
1622930823.7019045-CDS-H-elongata_contig50025:3355..35191622930823.7019045-CDS-H-elongata_contig50025:3355..3519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50025 3356..3519 -
1691679585.9418278-CDS-H-elongata_contig50025:3355..35191691679585.9418278-CDS-H-elongata_contig50025:3355..3519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50025 3356..3519 -
1622930823.7180297-CDS-H-elongata_contig50025:3806..39151622930823.7180297-CDS-H-elongata_contig50025:3806..3915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50025 3807..3915 -
1691679585.9494274-CDS-H-elongata_contig50025:3806..39151691679585.9494274-CDS-H-elongata_contig50025:3806..3915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50025 3807..3915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50025.12225.1

>prot_H-elongata_contig50025.12225.1 ID=prot_H-elongata_contig50025.12225.1|Name=mRNA_H-elongata_contig50025.12225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
MDPHPCQFFLWDSQSAVKFCECSRLLKSTATTSLWEDKHNQLWLQMPYTS
RLLRLFPCQQHSLSRCARCGHEYWEHVRWAAQRRRDRPFEKLLERTSKGV
SNETPLDYRGASVLVYSKTASGRGTRVDTPKDGLRGGPGNWGSMLAVFAE
AQRTSTFQTSGISVTSAAARATFEEVKNLKAATASIKKGTKK*
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mRNA from alignment at H-elongata_contig50025:2101..3946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50025.12225.1 ID=mRNA_H-elongata_contig50025.12225.1|Name=mRNA_H-elongata_contig50025.12225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1846bp|location=Sequence derived from alignment at H-elongata_contig50025:2101..3946- (Himanthalia elongata Himel1 dioecious)
CAGACCGCAATGGCCTGTACCGGATCATCGAATGGACCCTCATCCTTGCC
AGTTTTTCCTGTGGGACTCGCAATCTGCGGTAAAGTTCTGCGAGTGCAGC
CGACTCTTGAAATCCACCGCGACGACCTCGCTTTGGGAAGGTAAGGAAGG
CGAGCGGAAAATCTTGATTTGTGGCTTGGTGCCGTCCCGCAGAACCTGTT
CCAGAAACGCTTCGGGCGCGAGGGCGAGATTCCTGTCCATCATCGGTCCC
ATGGATTCAAGCTACGAAAGTTTTTCCGTGTAGCATCGCTAGGGCAGCAG
TGTTATCATTTGGGATGTGTATGAAATGGCGCGGCGTGCTGTCGTGAATC
CCGCCGGGTCGCACCCCCTTGCTTTCGCCTTCGCTGGTATCCTTCCTCTC
CCAACTCTCTTAATCTCGCGTCGACAGATAAACACAACCAGCTCTGGCTA
CAGATGCCGTACACAAGTAGATTGCTGCGGCTCTTCCCGTGCCAGCAGCA
CAGCCTCAGCCGCTGCGCCAGGTGCGGCCACGAGTACTGGGAGCATGTGC
GGTGGGCTGCTCAGAGGCGACGAGACCGGCCGTTCGAAAAGGTTGGTCTC
AATCCAACGGAATCGTGCGGACTCGTGTCCCAACTTTTTGTATCGTTACA
GCAGCCGCGGGGCGTAAAGCTATTGTTTGATGATGGAAAGATGGTTGGGG
TTTCCACAGTTTATTCTTGGGGCTGCGGTGGAGCAGTCGCCGTAAGGATC
ACCGCGATTCGCGCGGCGTTGGTAGAGTGGTTTGAGCGCAGTCATTGCGA
ATTAAGTTAAATGTCTGACCCGTGTTCTGCGCGTCATCGTCTTGCCTCAA
GACCCTCGATTGCTAGACAGCATCGCTTTTTTTGCGGTAGCGTATATCTT
GAGCTTCTCATGAGCATCACAGTTCCCGTATCTTACCCCCCCCCTCCCCC
GCCTCTCGTTAAATATTTTTCGGTCGATAAAGCTTCTCGAGCGAACATCT
AAAGGGGTTTCTAATGAAACACCGCTAGATTATCGCGGAGCTTCCGTTCT
GGTATATTCGAAAACGGCGAGCGGCCGTGGGACAAGGGTGGACACACCTA
AAGATGGTTTGAGAGGCGGTCCAGGGAACTGGGGGAGCATGCTCGCGGTG
TTCGCGGAGGCTCAACGGACGTCCACGTTTCAGACCTCGGGGATAAGCGT
GACATCCGCGGCCGCCCGCGCGACGTTTGAGGAAGTGAAAAATTTGAAGG
CCGCAACCGCGTCGATAAAAAAAGGCACTAAAAAGTGAAGGGCGTCATTG
CGCATAAGGAGACCAGGGCCCGGACCTAGACGAAAGTGTGGCAAGAGTTC
CATCGACGAGGCATTATCGGCGACGGAATATTGGGATAAGCGCGATGGCT
GGGAAACTGGCGAGGTGACGACCCGGACGTGTCCACTGCGGCGTCCATCG
GCTTCAAGGTTTTGCCCTTGAGTGCCTGTGGCGCGAACCAATCACGATAC
ATACATTGTACGTTATACACTTGGTATTATTTACATTTATATTATATATA
TATACCTGCATACATTGTACCTTTACACTGTGGTAGTATAGCGCGGTTTA
GCTGTCCGGATGGACGGATCATGACGGCCTATCGAAGACAGGTCGGTCGC
AAACGTTTGTTGAGGCGGGCGCTTGAGCAAGCATAGCGTTGTAACGATAC
GCCCGCACAACCACTGCGATTAACTCATGCAGCGAAGCCACCCAATAGTT
TGCGCCTCTGCTGCGTTTTTTTTTTTGTGAAGAAGCCGCCAGAGCGAACT
TGAAAGGCTTCACCATTCCATGAACCCACCCGTGAGCGTGCGCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig50025:2101..3946-

>mRNA_H-elongata_contig50025.12225.1 ID=mRNA_H-elongata_contig50025.12225.1|Name=mRNA_H-elongata_contig50025.12225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig50025:2101..3946- (Himanthalia elongata Himel1 dioecious)
ATGGACCCTCATCCTTGCCAGTTTTTCCTGTGGGACTCGCAATCTGCGGT
AAAGTTCTGCGAGTGCAGCCGACTCTTGAAATCCACCGCGACGACCTCGC
TTTGGGAAGATGGACCCTCATCCTTGCCAGTTTTTCCTGTGGGACTCGCA
ATCTGCGGTAAAGTTCTGCGAGTGCAGCCGACTCTTGAAATCCACCGCGA
CGACCTCGCTTTGGGAAGATAAACACAACCAGCTCTGGCTACAGATGCCG
TACACAAGTAGATTGCTGCGGCTCTTCCCGTGCCAGCAGCACAGCCTCAG
CCGCTGCGCCAGGTGCGGCCACGAGTACTGGGAGCATGTGCGGTGGGCTG
CTCAGAGGCGACGAGACCGGCCGTTCGAAAAGATAAACACAACCAGCTCT
GGCTACAGATGCCGTACACAAGTAGATTGCTGCGGCTCTTCCCGTGCCAG
CAGCACAGCCTCAGCCGCTGCGCCAGGTGCGGCCACGAGTACTGGGAGCA
TGTGCGGTGGGCTGCTCAGAGGCGACGAGACCGGCCGTTCGAAAAGCTTC
TCGAGCGAACATCTAAAGGGGTTTCTAATGAAACACCGCTAGATTATCGC
GGAGCTTCCGTTCTGGTATATTCGAAAACGGCGAGCGGCCGTGGGACAAG
GGTGGACACACCTAAAGATGGTTTGAGAGGCGGTCCAGGGAACTGGGGGA
GCATGCTCGCGGTGTTCGCGGAGGCTCAACGGACGTCCACGTTTCAGACC
TCGGGGATAAGCGTGACATCCGCGGCCGCCCGCGCGACGTTTGAGGAAGT
GAAAAATTTGAAGGCCGCAACCGCGTCGATAAAAAAAGGCACTAAAAAGT
GACTTCTCGAGCGAACATCTAAAGGGGTTTCTAATGAAACACCGCTAGAT
TATCGCGGAGCTTCCGTTCTGGTATATTCGAAAACGGCGAGCGGCCGTGG
GACAAGGGTGGACACACCTAAAGATGGTTTGAGAGGCGGTCCAGGGAACT
GGGGGAGCATGCTCGCGGTGTTCGCGGAGGCTCAACGGACGTCCACGTTT
CAGACCTCGGGGATAAGCGTGACATCCGCGGCCGCCCGCGCGACGTTTGA
GGAAGTGAAAAATTTGAAGGCCGCAACCGCGTCGATAAAAAAAGGCACTA
AAAAGTGA
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