mRNA_H-elongata_contig49938.12215.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI) HSP 1 Score: 306 bits (783), Expect = 1.770e-93 Identity = 151/256 (58.98%), Postives = 179/256 (69.92%), Query Frame = 1
Query: 1 QMENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQR-----------------------------------------YYLWELVRFLVLSMTFILGFIIWSESPNWVGHIEPGDDRLHVSG 645
+M+ IRLV+PEHMGA RSWR+RGLQKSARSLTPLGVAVLHNHE IA+WLMGYG+E C++CKR N+F+EENRDLALV KTWPELLPEVL+GF+ + K SWDTD+KR V TGWSER YD+KLLYG PEV+++RSPL+I L GH +F+VKVVQMVVALKWS+FG R YY+WEL R+LVLS +FI+GF IW+E PNW G I+ DDR V G
Sbjct: 506 KMQKIRLVKPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIARWLMGYGTEGQHCISCKRNNIFKEENRDLALVAKTWPELLPEVLRGFQHDMKAQKYSWDTDEKRPVAPTGWSERTYDIKLLYGLPEVASSRSPLSILLQTGHTSLFEVKVVQMVVALKWSVFGHRPTRLGAARPSTHVWWIVMGCFPPVAESKALSGIMYNRTISRYYVWELGRYLVLSASFIMGFTIWAEVPNWAGPIDSDDDRGQVMG 761
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 265 bits (678), Expect = 1.100e-78 Identity = 126/171 (73.68%), Postives = 146/171 (85.38%), Query Frame = 1
Query: 1 QMENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQR 513
+M++IRLV+PEHMGA RSWR+RGLQKSARSLTPLGVAVLHNHE IAKWLMGYG+E C++CKR NLF+E NRDLALV KTWPELLPEVLQGF+ + K SWDTD+KR V TGWSER YD+KLLYG PEV+++RSPL+I L GH +F+VKVVQMVVALKWS+FG R
Sbjct: 457 KMQDIRLVQPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKE-NRDLALVAKTWPELLPEVLQGFQHDRKVEKYSWDTDEKRPVAPTGWSERTYDIKLLYGLPEVASSRSPLSILLQTGHTSLFEVKVVQMVVALKWSVFGHR 626
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A7S1TWL2_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWL2_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.960e-29 Identity = 72/196 (36.73%), Postives = 113/196 (57.65%), Query Frame = 1
Query: 4 MENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEV-SANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFIIWSE 588
+ ++ L EH+ A SW RGL +AR L+PLGVA+LHN E +A+ L+ PG A +R +FR++N DLAL+ + WP L+P VL +V T D++ + G+ + L +G P + +PLAI +G PE+ V +V+ +KW +FGQR Y+ +L+R+ V+ +++ LGFII+ E
Sbjct: 549 ISDLGLAEDEHITARNSWPGRGLMAAARRLSPLGVAILHNQEAVAQLLVAVSPSTPGGCA-RRAAVFRDDNEDLALLARAWPSLVPAVLDATDV----------TVDEQ--AAGGYVVQTLRLHDWFGDPATRNVYDTPLAILSRSGRPEVLAHPVANLVIHMKWKLFGQRMYIMQLLRYAVVLVSYFLGFIIFPE 731
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A7R9U5T3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5T3_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.510e-26 Identity = 63/186 (33.87%), Postives = 101/186 (54.30%), Query Frame = 1
Query: 31 EHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPE---MFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFII 579
EH+ A SW RGL A L+PLGVA+LHN +A+ LM G +R +F ++N DL L+ K WP L+P +LQ F V+ ++ V + G+ Y + +G +PLA+ L + +++++++Q+V+ LKW +FG+RYY L R++ L +T+I GFI+
Sbjct: 608 EHVTARNSWAARGLTSFAEHLSPLGVAILHNQGSLARLLMSIDCGS-GLDCRRRRTIFYDDNEDLRLLAKVWPSLIPALLQQFSVKTNQ------------VANLGYKATRYIIHPWFGHHNTPIYHTPLAVMLRFDGEDWNCLYNMRIIQVVITLKWQLFGKRYYYGALARYVFLVVTYIFGFIL 780
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A835Z0J0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J0_9STRA) HSP 1 Score: 106 bits (265), Expect = 6.060e-23 Identity = 79/278 (28.42%), Postives = 118/278 (42.45%), Query Frame = 1
Query: 73 QKSARSLTPLGVAVLH---NHED---IAKWLMGYGSEDPG----CVACKRENLFREENRDLALVVKTWPELLPEVLQGF-----------------------------EVEDSRPKSSWDTDDKRKVT------------------------------------------------------------STGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFIIWSESPNWVGH 609
++S + T V VL +H D +A+WLMGYG PG C+ KR LF+++ DL +V KTWPELLPEVL F V+ R + +D + T + GW ERIYD+KLLYG P++ A+ +PL+I L + +FD+ VV++++ LKW+++G YY+WEL+R+ +TF +GFI W+G+
Sbjct: 1783 KRSGDACTLTFVRVLQLICSHRDRVQVAQWLMGYG---PGHSVKCMRDKRALLFQDQCHDLRMVAKTWPELLPEVLNSFGSDVVKNSHFTAQDGRLERASEFFNIRSERVQHFRSVYNMMSDQSPQYTLMPVRAAPLSGGWVERIYNVKLLYCCNLLQERVQRYSEAYTRGFVVNNRFTLMPLRAATAAGGWVERIYDVKLLYGEPDIPASNTPLSILLDTHYAPVFDLPVVKLIIQLKWTLYGGSYYMWELMRYFGTVITFYMGFI-------WLGN 2050 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49938.12215.1 >prot_H-elongata_contig49938.12215.1 ID=prot_H-elongata_contig49938.12215.1|Name=mRNA_H-elongata_contig49938.12215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp MENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGback to top mRNA from alignment at H-elongata_contig49938:433..2901- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49938.12215.1 ID=mRNA_H-elongata_contig49938.12215.1|Name=mRNA_H-elongata_contig49938.12215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2469bp|location=Sequence derived from alignment at H-elongata_contig49938:433..2901- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49938:433..2901- >mRNA_H-elongata_contig49938.12215.1 ID=mRNA_H-elongata_contig49938.12215.1|Name=mRNA_H-elongata_contig49938.12215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig49938:433..2901- (Himanthalia elongata Himel1 dioecious)back to top |