prot_H-elongata_contig49938.12215.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig49938.12215.1
Unique Nameprot_H-elongata_contig49938.12215.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length214
Homology
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 3.270e-93
Identity = 151/255 (59.22%), Postives = 178/255 (69.80%), Query Frame = 0
Query:    1 MENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQR-----------------------------------------YYLWELVRFLVLSMTFILGFIIWSESPNWVGHIEPGDDRLHVSG 214
            M+ IRLV+PEHMGA RSWR+RGLQKSARSLTPLGVAVLHNHE IA+WLMGYG+E   C++CKR N+F+EENRDLALV KTWPELLPEVL+GF+ +    K SWDTD+KR V  TGWSER YD+KLLYG PEV+++RSPL+I L  GH  +F+VKVVQMVVALKWS+FG R                                         YY+WEL R+LVLS +FI+GF IW+E PNW G I+  DDR  V G
Sbjct:  507 MQKIRLVKPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIARWLMGYGTEGQHCISCKRNNIFKEENRDLALVAKTWPELLPEVLRGFQHDMKAQKYSWDTDEKRPVAPTGWSERTYDIKLLYGLPEVASSRSPLSILLQTGHTSLFEVKVVQMVVALKWSVFGHRPTRLGAARPSTHVWWIVMGCFPPVAESKALSGIMYNRTISRYYVWELGRYLVLSASFIMGFTIWAEVPNWAGPIDSDDDRGQVMG 761          
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 2.010e-78
Identity = 126/170 (74.12%), Postives = 145/170 (85.29%), Query Frame = 0
Query:    1 MENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQR 170
            M++IRLV+PEHMGA RSWR+RGLQKSARSLTPLGVAVLHNHE IAKWLMGYG+E   C++CKR NLF+E NRDLALV KTWPELLPEVLQGF+ +    K SWDTD+KR V  TGWSER YD+KLLYG PEV+++RSPL+I L  GH  +F+VKVVQMVVALKWS+FG R
Sbjct:  458 MQDIRLVQPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGTEGEQCISCKRNNLFKE-NRDLALVAKTWPELLPEVLQGFQHDRKVEKYSWDTDEKRPVAPTGWSERTYDIKLLYGLPEVASSRSPLSILLQTGHTSLFEVKVVQMVVALKWSVFGHR 626          
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A7S1TWL2_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWL2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.220e-29
Identity = 72/196 (36.73%), Postives = 113/196 (57.65%), Query Frame = 0
Query:    1 MENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEV-SANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFIIWSE 195
            + ++ L   EH+ A  SW  RGL  +AR L+PLGVA+LHN E +A+ L+      PG  A +R  +FR++N DLAL+ + WP L+P VL   +V          T D++   + G+  +   L   +G P   +   +PLAI   +G PE+    V  +V+ +KW +FGQR Y+ +L+R+ V+ +++ LGFII+ E
Sbjct:  549 ISDLGLAEDEHITARNSWPGRGLMAAARRLSPLGVAILHNQEAVAQLLVAVSPSTPGGCA-RRAAVFRDDNEDLALLARAWPSLVPAVLDATDV----------TVDEQ--AAGGYVVQTLRLHDWFGDPATRNVYDTPLAILSRSGRPEVLAHPVANLVIHMKWKLFGQRMYIMQLLRYAVVLVSYFLGFIIFPE 731          
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A7R9U5T3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5T3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.430e-26
Identity = 63/186 (33.87%), Postives = 101/186 (54.30%), Query Frame = 0
Query:   10 EHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMGYGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPKSSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPE---MFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFII 192
            EH+ A  SW  RGL   A  L+PLGVA+LHN   +A+ LM       G    +R  +F ++N DL L+ K WP L+P +LQ F V+ ++            V + G+    Y +   +G        +PLA+ L     +   +++++++Q+V+ LKW +FG+RYY   L R++ L +T+I GFI+
Sbjct:  608 EHVTARNSWAARGLTSFAEHLSPLGVAILHNQGSLARLLMSIDCGS-GLDCRRRRTIFYDDNEDLRLLAKVWPSLIPALLQQFSVKTNQ------------VANLGYKATRYIIHPWFGHHNTPIYHTPLAVMLRFDGEDWNCLYNMRIIQVVITLKWQLFGKRYYYGALARYVFLVVTYIFGFIL 780          
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Match: A0A835Z0J0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.880e-23
Identity = 79/278 (28.42%), Postives = 118/278 (42.45%), Query Frame = 0
Query:   24 QKSARSLTPLGVAVLH---NHED---IAKWLMGYGSEDPG----CVACKRENLFREENRDLALVVKTWPELLPEVLQGF-----------------------------EVEDSRPKSSWDTDDKRKVT------------------------------------------------------------STGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEMFDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFIIWSESPNWVGH 202
            ++S  + T   V VL    +H D   +A+WLMGYG   PG    C+  KR  LF+++  DL +V KTWPELLPEVL  F                              V+  R   +  +D   + T                                                            + GW ERIYD+KLLYG P++ A+ +PL+I L   +  +FD+ VV++++ LKW+++G  YY+WEL+R+    +TF +GFI       W+G+
Sbjct: 1783 KRSGDACTLTFVRVLQLICSHRDRVQVAQWLMGYG---PGHSVKCMRDKRALLFQDQCHDLRMVAKTWPELLPEVLNSFGSDVVKNSHFTAQDGRLERASEFFNIRSERVQHFRSVYNMMSDQSPQYTLMPVRAAPLSGGWVERIYNVKLLYCCNLLQERVQRYSEAYTRGFVVNNRFTLMPLRAATAAGGWVERIYDVKLLYGEPDIPASNTPLSILLDTHYAPVFDLPVVKLIIQLKWTLYGGSYYMWELMRYFGTVITFYMGFI-------WLGN 2050          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49938.12215.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FIX0_ECTSI3.270e-9359.22Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5K0W6_9PHAE2.010e-7874.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1TWL2_9STRA5.220e-2936.73Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U5T3_9STRA2.430e-2633.87Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835Z0J0_9STRA5.880e-2328.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 172..193
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 194..214
NoneNo IPR availableTMHMMTMhelixcoord: 171..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49938contigH-elongata_contig49938:433..2898 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49938.12215.1mRNA_H-elongata_contig49938.12215.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig49938 433..2901 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig49938.12215.1 ID=prot_H-elongata_contig49938.12215.1|Name=mRNA_H-elongata_contig49938.12215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
MENIRLVRPEHMGAVRSWRMRGLQKSARSLTPLGVAVLHNHEDIAKWLMG
YGSEDPGCVACKRENLFREENRDLALVVKTWPELLPEVLQGFEVEDSRPK
SSWDTDDKRKVTSTGWSERIYDLKLLYGSPEVSANRSPLAIFLSAGHPEM
FDVKVVQMVVALKWSIFGQRYYLWELVRFLVLSMTFILGFIIWSESPNWV
GHIEPGDDRLHVSG
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